Wall clock time and date at job start Tue Mar 31 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46933 * 2 1 4 4 N 1.46901 * 109.47093 * 120.00265 * 2 1 3 5 5 C 1.46901 * 110.99847 * 274.99868 * 4 2 1 6 6 C 1.50696 * 109.47411 * 180.02562 * 5 4 2 7 7 O 1.21299 * 119.99451 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00477 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00063 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00297 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00064 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00277 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99651 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46982 * 90.00157 * 13 11 9 15 15 H 1.48501 * 109.46843 * 209.99970 * 13 11 9 16 16 H 1.48496 * 109.47148 * 329.99625 * 13 11 9 17 17 C 1.50702 * 109.46868 * 239.99899 * 2 1 3 18 18 C 1.38258 * 120.00015 * 265.02212 * 17 2 1 19 19 C 1.38211 * 119.99754 * 180.02562 * 18 17 2 20 20 C 1.38262 * 120.00073 * 359.97070 * 19 18 17 21 21 C 1.38215 * 119.99667 * 359.75383 * 20 19 18 22 22 C 1.38211 * 119.99765 * 85.00095 * 17 2 1 23 23 C 1.50703 * 120.00060 * 0.02562 * 22 17 2 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 22 17 25 25 F 1.39900 * 109.47159 * 60.00143 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.99834 * 23 22 17 27 27 H 1.08998 * 109.47030 * 300.00092 * 1 2 3 28 28 H 1.08998 * 109.47034 * 59.99594 * 1 2 3 29 29 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.00896 * 110.99728 * 38.94942 * 4 2 1 31 31 H 1.08998 * 109.46992 * 300.00080 * 5 4 2 32 32 H 1.09004 * 109.47429 * 59.99490 * 5 4 2 33 33 H 0.97003 * 119.99797 * 0.02562 * 8 6 5 34 34 H 0.97003 * 120.00144 * 180.02562 * 12 11 9 35 35 H 1.07994 * 119.99762 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.99803 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99632 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.99260 * 180.27051 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8697 -1.6983 3.4696 8 7 2.7297 0.1208 4.7322 9 6 3.1895 -0.5563 5.8319 10 1 3.4391 -1.6043 5.7556 11 6 3.3355 0.1060 7.0447 12 7 3.7768 -0.5429 8.0988 13 14 2.9045 1.9188 7.1766 14 1 1.4755 2.0616 7.5543 15 1 3.7564 2.5560 8.2128 16 1 3.1392 2.5799 5.8678 17 6 2.0323 -0.7104 -1.2305 18 6 2.3607 -2.0520 -1.1685 19 6 2.8218 -2.7034 -2.2969 20 6 2.9542 -2.0136 -3.4878 21 6 2.6205 -0.6738 -3.5511 22 6 2.1643 -0.0209 -2.4210 23 6 1.8064 1.4414 -2.4885 24 9 2.0225 1.9150 -3.7871 25 9 2.6057 2.1590 -1.5921 26 9 0.4596 1.6081 -2.1490 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.4495 -1.4979 1.4100 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6164 2.5525 33 1 2.5052 1.0619 4.8009 34 1 3.8784 -0.0806 8.9455 35 1 2.2576 -2.5907 -0.2382 36 1 3.0787 -3.7513 -2.2484 37 1 3.3149 -2.5225 -4.3694 38 1 2.7198 -0.1361 -4.4824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342015257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:42 Heat of formation + Delta-G solvation = -170.405758 kcal Electronic energy + Delta-G solvation = -26514.505751 eV Core-core repulsion = 22134.392416 eV Total energy + Delta-G solvation = -4380.113336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.26627 -48.75896 -48.70657 -40.82500 -40.17728 -37.54361 -35.97148 -33.78112 -33.29157 -32.49089 -30.35821 -28.16215 -26.97299 -25.74799 -24.60745 -22.94426 -21.67782 -21.31666 -20.36762 -19.56488 -19.44950 -19.28577 -17.93153 -17.27690 -16.65185 -16.52946 -16.37329 -15.87138 -15.78832 -15.56491 -15.45567 -15.23219 -15.11728 -15.06307 -14.83932 -14.73630 -14.47743 -14.46758 -14.19750 -13.86459 -13.59569 -13.36504 -13.21218 -12.95528 -12.70686 -12.47666 -12.42060 -12.06210 -11.98111 -11.82997 -11.51864 -10.47139 -10.25602 -10.15594 -9.80589 -9.42137 -8.41868 -6.02645 -0.01840 0.34268 1.30493 1.34751 1.44015 1.64165 1.93835 2.22398 2.52684 2.64388 2.72010 3.01992 3.14538 3.31200 3.39339 3.63108 3.89540 4.05635 4.09088 4.17066 4.21950 4.36016 4.43144 4.50355 4.51491 4.67201 4.78333 4.83121 5.00941 5.20241 5.26232 5.37647 5.48624 5.53075 5.85278 5.89712 5.99214 6.29270 6.58537 6.86986 7.38561 7.94251 8.75664 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003235 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.931415 B = 8653.377051 C = 9498.352418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.094 0.906 4 N -0.670 5.670 5 C 0.060 3.940 6 C 0.451 3.549 7 O -0.611 6.611 8 N -0.590 5.590 9 C -0.328 4.328 10 H 0.057 0.943 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.233 1.233 17 C -0.030 4.030 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.122 4.122 21 C -0.078 4.078 22 C -0.198 4.198 23 C 0.509 3.491 24 F -0.176 7.176 25 F -0.182 7.182 26 F -0.172 7.172 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.350 0.650 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.389 0.611 34 H 0.279 0.721 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 5.967 -26.753 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.005 4.005 3 H 0.111 0.889 4 N -0.303 5.303 5 C -0.072 4.072 6 C 0.239 3.761 7 O -0.495 6.495 8 N -0.232 5.232 9 C -0.458 4.458 10 H 0.075 0.925 11 C -0.212 4.212 12 N -0.574 5.574 13 Si 0.783 3.217 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.157 1.157 17 C -0.031 4.031 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.200 4.200 23 C 0.455 3.545 24 F -0.157 7.157 25 F -0.163 7.163 26 F -0.154 7.154 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.354 5.296 -26.743 27.994 hybrid contribution -0.876 0.974 1.177 1.761 sum -7.230 6.270 -25.566 27.299 Atomic orbital electron populations 1.22767 0.94133 1.03437 1.04464 1.20729 0.94478 0.97606 0.87660 0.88851 1.60126 1.58399 1.09194 1.02557 1.21657 1.01966 0.95378 0.88172 1.20832 0.82610 0.87928 0.84746 1.90540 1.55262 1.18518 1.85171 1.42022 1.60546 1.11814 1.08818 1.19012 1.42486 0.96087 0.88186 0.92502 1.26090 0.96374 1.04879 0.93894 1.69797 1.46215 1.39595 1.01800 0.85391 0.79476 0.76658 0.80182 1.18032 1.20015 1.15652 1.19580 0.96112 0.94718 0.92680 1.21157 0.98900 0.93558 0.99580 1.21745 0.95243 1.01478 0.92204 1.21500 0.99771 0.93517 0.99199 1.21229 0.95457 0.95702 0.97191 1.19825 1.11432 0.91396 0.97314 1.18392 0.74504 0.88226 0.73378 1.93156 1.94554 1.90107 1.37876 1.93177 1.74031 1.80707 1.68395 1.93102 1.34245 1.96215 1.91808 0.91356 0.89428 0.91787 0.83022 0.87343 0.90162 0.77515 0.91123 0.85304 0.83133 0.81938 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.78 8.93 71.98 0.64 -3.13 16 2 C 0.11 2.48 2.14 44.17 0.09 2.57 16 3 H 0.09 2.23 5.41 -2.39 -0.01 2.21 16 4 N -0.67 -19.77 4.88 -499.45 -2.44 -22.21 16 5 C 0.06 1.88 5.96 85.56 0.51 2.39 16 6 C 0.45 20.32 7.82 87.66 0.69 21.01 16 7 O -0.61 -33.45 15.78 -3.09 -0.05 -33.50 16 8 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 9 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 10 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 11 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 12 N -0.93 -56.35 13.96 21.66 0.30 -56.05 16 13 Si 0.96 38.94 27.74 68.60 1.90 40.84 16 14 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 15 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 17 C -0.03 -0.68 5.03 -19.87 -0.10 -0.78 16 18 C -0.11 -2.53 9.32 22.27 0.21 -2.32 16 19 C -0.09 -1.49 10.05 22.27 0.22 -1.27 16 20 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 21 C -0.08 -1.24 9.43 22.27 0.21 -1.03 16 22 C -0.20 -4.01 5.37 -19.87 -0.11 -4.12 16 23 C 0.51 10.29 2.83 71.24 0.20 10.49 16 24 F -0.18 -3.28 15.97 44.97 0.72 -2.57 16 25 F -0.18 -4.14 15.33 44.97 0.69 -3.45 16 26 F -0.17 -3.42 13.60 44.97 0.61 -2.81 16 27 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 28 H 0.09 1.65 5.01 -2.39 -0.01 1.63 16 29 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.35 10.63 7.60 -89.70 -0.68 9.95 16 31 H 0.11 3.01 8.05 -2.39 -0.02 2.99 16 32 H 0.08 2.02 7.44 -2.39 -0.02 2.01 16 33 H 0.39 15.30 5.76 -92.71 -0.53 14.77 16 34 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.13 3.18 6.89 -2.91 -0.02 3.16 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.15 1.80 7.16 -2.91 -0.02 1.78 16 Total: -1.00 -74.01 326.37 4.16 -69.85 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.13 Total: 35.75 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.11 Total: 3.61 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -3.70 Total: -107.73 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.05 Total: -33.50 kcal Atomic # 9 Polarization: -10.85 SS G_CDS: 2.02 Total: -8.83 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.84 kcal Total: -74.01 4.16 -69.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342015257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.559 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds