Wall clock time and date at job start Tue Mar 31 2020 10:43:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.41382 * 126.80494 * 2 1
4 4 C 1.35445 * 103.98580 * 180.02562 * 3 2 1
5 5 C 1.50699 * 126.77411 * 179.97438 * 4 3 2
6 6 O 1.42901 * 109.47489 * 90.00430 * 5 4 3
7 7 C 1.42896 * 114.00388 * 179.97438 * 6 5 4
8 8 C 1.50693 * 109.47069 * 179.97438 * 7 6 5
9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6
10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6
11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7
12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8
13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10
14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11
15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12
16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13
17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14
18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15
19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15
20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16
21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16
22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17
23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17
24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17
25 25 O 1.34039 * 106.44658 * 0.24466 * 4 3 2
26 26 N 1.20924 * 111.56936 * 359.56172 * 25 4 3
27 27 H 1.08993 * 109.47257 * 89.99864 * 1 2 3
28 28 H 1.09003 * 109.47004 * 209.99964 * 1 2 3
29 29 H 1.09005 * 109.46835 * 329.99916 * 1 2 3
30 30 H 1.07999 * 128.00569 * 0.03456 * 3 2 1
31 31 H 1.08994 * 109.47362 * 329.99922 * 5 4 3
32 32 H 1.09007 * 109.46858 * 210.00337 * 5 4 3
33 33 H 1.09004 * 109.46992 * 59.99681 * 7 6 5
34 34 H 1.08999 * 109.47382 * 300.00034 * 7 6 5
35 35 H 0.96996 * 119.99503 * 4.37567 * 10 8 7
36 36 H 1.08002 * 119.97971 * 359.97438 * 12 11 10
37 37 H 1.07995 * 119.69606 * 179.76870 * 13 12 11
38 38 H 1.07997 * 119.71651 * 180.02562 * 14 13 12
39 39 H 1.08000 * 120.02277 * 180.02562 * 15 14 13
40 40 H 0.97005 * 119.99936 * 354.62807 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3540 1.1320 0.0000
4 6 3.6025 0.6067 -0.0006
5 6 4.9022 1.3695 -0.0014
6 8 5.3139 1.6107 1.3456
7 6 6.5428 2.3312 1.4577
8 6 6.8784 2.5286 2.9135
9 8 6.1383 2.0945 3.7707
10 7 8.0016 3.1866 3.2630
11 6 8.3585 3.2900 4.6036
12 6 7.3816 3.4079 5.5803
13 6 7.7423 3.5158 6.9102
14 6 9.0798 3.5019 7.2836
15 6 10.0617 3.3821 6.3435
16 6 9.7214 3.2708 4.9824
17 6 10.7304 3.1471 4.0043
18 1 10.5120 2.6696 3.0605
19 6 12.0144 3.6434 4.2568
20 7 12.1829 4.6151 5.1168
21 14 13.4878 2.9185 3.3663
22 1 14.7239 3.6129 3.8077
23 1 13.5940 1.4712 3.6817
24 1 13.3167 3.0947 1.9017
25 8 3.4537 -0.7254 -0.0064
26 7 2.2868 -1.0424 -0.0006
27 1 -0.3633 0.0000 -1.0276
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3633 0.8900 0.5139
30 1 2.0711 2.1743 0.0005
31 1 4.7649 2.3208 -0.5153
32 1 5.6657 0.7857 -0.5156
33 1 6.4399 3.3026 0.9739
34 1 7.3401 1.7671 0.9739
35 1 8.5609 3.5880 2.5797
36 1 6.3383 3.4203 5.3013
37 1 6.9769 3.6112 7.6661
38 1 9.3452 3.5867 8.3270
39 1 11.0991 3.3720 6.6438
40 1 11.4125 5.0440 5.5211
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344399660.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:21
Heat of formation + Delta-G solvation = -0.043141 kcal
Electronic energy + Delta-G solvation = -24819.830085 eV
Core-core repulsion = 20988.960967 eV
Total energy + Delta-G solvation = -3830.869118 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.12693 -39.76770 -38.18772 -37.10299 -35.01577 -34.00560 -33.82938 -32.87137
-29.62080 -29.32999 -28.94753 -27.77720 -26.18470 -25.01279 -23.30697 -21.79908
-20.99153 -20.52867 -19.57461 -18.10534 -17.94915 -17.68128 -16.89531 -16.73218
-16.38160 -15.73062 -15.19026 -14.79423 -14.59465 -14.19065 -14.03882 -13.79127
-13.66077 -13.34653 -13.24691 -12.88603 -12.66587 -12.49823 -12.23786 -12.00218
-11.95849 -11.50064 -11.36925 -11.06418 -10.72665 -10.47731 -10.34258 -10.24215
-10.00163 -9.77423 -9.73347 -9.37240 -9.08428 -8.88834 -7.65407 -7.42933
-7.00905 -4.52225 1.09789 1.95606 2.50709 2.68773 2.76669 3.08754
3.16515 3.21193 3.29679 3.35356 3.93148 3.94152 4.05847 4.36054
4.50663 4.69173 4.74074 4.87830 4.99519 5.05290 5.14515 5.15834
5.19582 5.25559 5.43937 5.47470 5.50434 5.83884 6.18404 6.29857
6.45395 6.66958 6.82328 6.91435 7.10215 7.34380 7.48804 7.68300
7.72723 7.88569 7.98091 8.03269 8.18012 8.29161 8.62352 8.73292
8.90224 9.96014
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.019033 B = 0.002599 C = 0.002358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1470.778358 B =10772.786078 C =11874.029662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.011 3.989
3 C -0.208 4.208
4 C -0.025 4.025
5 C 0.141 3.859
6 O -0.355 6.355
7 C 0.047 3.953
8 C 0.497 3.503
9 O -0.519 6.519
10 N -0.634 5.634
11 C 0.005 3.995
12 C -0.072 4.072
13 C -0.240 4.240
14 C -0.091 4.091
15 C -0.208 4.208
16 C 0.092 3.908
17 C -0.526 4.526
18 H 0.074 0.926
19 C 0.040 3.960
20 N -0.794 5.794
21 Si 1.064 2.936
22 H -0.274 1.274
23 H -0.275 1.275
24 H -0.276 1.276
25 O 0.109 5.891
26 N -0.361 5.361
27 H 0.080 0.920
28 H 0.076 0.924
29 H 0.082 0.918
30 H 0.174 0.826
31 H 0.088 0.912
32 H 0.078 0.922
33 H 0.081 0.919
34 H 0.085 0.915
35 H 0.403 0.597
36 H 0.111 0.889
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.109 0.891
40 H 0.301 0.699
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.958 -1.745 -13.657 18.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.148 4.148
3 C -0.229 4.229
4 C -0.089 4.089
5 C 0.063 3.937
6 O -0.273 6.273
7 C -0.033 4.033
8 C 0.282 3.718
9 O -0.394 6.394
10 N -0.278 5.278
11 C -0.088 4.088
12 C -0.092 4.092
13 C -0.260 4.260
14 C -0.110 4.110
15 C -0.228 4.228
16 C 0.087 3.913
17 C -0.554 4.554
18 H 0.092 0.908
19 C -0.182 4.182
20 N -0.417 5.417
21 Si 0.888 3.112
22 H -0.198 1.198
23 H -0.200 1.200
24 H -0.202 1.202
25 O 0.040 5.960
26 N -0.064 5.064
27 H 0.098 0.902
28 H 0.095 0.905
29 H 0.101 0.899
30 H 0.192 0.808
31 H 0.106 0.894
32 H 0.097 0.903
33 H 0.099 0.901
34 H 0.103 0.897
35 H 0.238 0.762
36 H 0.129 0.871
37 H 0.110 0.890
38 H 0.109 0.891
39 H 0.127 0.873
40 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -11.173 -3.329 -12.992 17.456
hybrid contribution -1.331 1.016 -0.336 1.708
sum -12.504 -2.314 -13.328 18.421
Atomic orbital electron populations
1.20168 0.85772 1.03983 1.03303 1.23637 0.99183 0.88775 1.03184
1.22481 0.91021 1.01335 1.08077 1.23946 0.97439 0.83842 1.03685
1.20653 0.89857 0.97519 0.85686 1.88098 1.39167 1.76286 1.23759
1.22262 0.87476 0.97448 0.96065 1.20081 0.82539 0.79295 0.89870
1.90694 1.48786 1.48836 1.51126 1.42660 1.24095 1.52931 1.08091
1.17553 0.93307 1.16250 0.81679 1.20712 0.97848 0.98153 0.92478
1.20272 0.95095 1.15690 0.94965 1.20413 0.93314 0.99727 0.97518
1.20757 0.98300 1.11405 0.92317 1.17483 0.90205 0.90754 0.92814
1.20316 0.96121 1.36011 1.02917 0.90751 1.26975 1.01922 0.93672
0.95641 1.70469 1.38052 1.14033 1.19107 0.83644 0.74676 0.76932
0.75994 1.19850 1.20013 1.20168 1.84832 1.21557 1.22605 1.66986
1.73861 0.89311 1.24180 1.19082 0.90165 0.90480 0.89892 0.80849
0.89375 0.90345 0.90079 0.89742 0.76191 0.87135 0.88951 0.89125
0.87314 0.88560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.54 10.48 36.01 0.38 -0.17 16
2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16
3 C -0.21 -2.13 11.06 -39.38 -0.44 -2.57 16
4 C -0.03 -0.29 7.12 -35.31 -0.25 -0.54 16
5 C 0.14 1.32 6.50 36.01 0.23 1.55 16
6 O -0.36 -5.01 9.86 -55.14 -0.54 -5.55 16
7 C 0.05 0.60 6.42 36.00 0.23 0.83 16
8 C 0.50 9.28 7.75 -10.98 -0.09 9.19 16
9 O -0.52 -12.03 13.91 -14.35 -0.20 -12.23 16
10 N -0.63 -12.37 4.90 -9.48 -0.05 -12.42 16
11 C 0.01 0.13 6.33 -83.17 -0.53 -0.40 16
12 C -0.07 -1.72 8.69 -39.44 -0.34 -2.06 16
13 C -0.24 -5.57 10.04 -39.36 -0.39 -5.96 16
14 C -0.09 -2.11 9.97 -39.99 -0.40 -2.51 16
15 C -0.21 -5.20 7.87 -39.28 -0.31 -5.51 16
16 C 0.09 2.31 5.32 -106.65 -0.57 1.74 16
17 C -0.53 -12.75 8.35 -37.86 -0.32 -13.06 16
18 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16
19 C 0.04 0.96 4.95 -17.33 -0.09 0.87 16
20 N -0.79 -19.87 12.32 55.55 0.68 -19.19 16
21 Si 1.06 20.19 30.00 -169.99 -5.10 15.09 16
22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16
23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16
24 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16
25 O 0.11 1.46 11.20 17.18 0.19 1.65 16
26 N -0.36 -4.90 12.07 33.42 0.40 -4.50 16
27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16
31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
35 H 0.40 6.77 7.95 -40.82 -0.32 6.44 16
36 H 0.11 2.64 6.20 -52.49 -0.33 2.32 16
37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16
38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16
39 H 0.11 2.77 6.45 -52.49 -0.34 2.43 16
40 H 0.30 7.75 6.62 -40.82 -0.27 7.48 16
LS Contribution 349.52 15.07 5.27 5.27
Total: -1.00 -32.50 349.52 -7.49 -39.98
By element:
Atomic # 1 Polarization: 15.65 SS G_CDS: -4.67 Total: 10.98 kcal
Atomic # 6 Polarization: -15.61 SS G_CDS: -3.47 Total: -19.08 kcal
Atomic # 7 Polarization: -37.14 SS G_CDS: 1.04 Total: -36.10 kcal
Atomic # 8 Polarization: -15.58 SS G_CDS: -0.55 Total: -16.13 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -5.10 Total: 15.09 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -32.50 -7.49 -39.98 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344399660.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.940 kcal
(2) G-P(sol) polarization free energy of solvation -32.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.043 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds