Wall clock time and date at job start Tue Mar 31 2020 10:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41382 * 126.80494 * 2 1 4 4 C 1.35445 * 103.98580 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77411 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47489 * 90.00430 * 5 4 3 7 7 C 1.42896 * 114.00388 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47069 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 O 1.34039 * 106.44658 * 0.24466 * 4 3 2 26 26 N 1.20924 * 111.56936 * 359.56172 * 25 4 3 27 27 H 1.08993 * 109.47257 * 89.99864 * 1 2 3 28 28 H 1.09003 * 109.47004 * 209.99964 * 1 2 3 29 29 H 1.09005 * 109.46835 * 329.99916 * 1 2 3 30 30 H 1.07999 * 128.00569 * 0.03456 * 3 2 1 31 31 H 1.08994 * 109.47362 * 329.99922 * 5 4 3 32 32 H 1.09007 * 109.46858 * 210.00337 * 5 4 3 33 33 H 1.09004 * 109.46992 * 59.99681 * 7 6 5 34 34 H 1.08999 * 109.47382 * 300.00034 * 7 6 5 35 35 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 36 36 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 38 38 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3695 -0.0014 6 8 5.3139 1.6107 1.3456 7 6 6.5428 2.3312 1.4577 8 6 6.8784 2.5286 2.9135 9 8 6.1383 2.0945 3.7707 10 7 8.0016 3.1866 3.2630 11 6 8.3585 3.2900 4.6036 12 6 7.3816 3.4079 5.5803 13 6 7.7423 3.5158 6.9102 14 6 9.0798 3.5019 7.2836 15 6 10.0617 3.3821 6.3435 16 6 9.7214 3.2708 4.9824 17 6 10.7304 3.1471 4.0043 18 1 10.5120 2.6696 3.0605 19 6 12.0144 3.6434 4.2568 20 7 12.1829 4.6151 5.1168 21 14 13.4878 2.9185 3.3663 22 1 14.7239 3.6129 3.8077 23 1 13.5940 1.4712 3.6817 24 1 13.3167 3.0947 1.9017 25 8 3.4537 -0.7254 -0.0064 26 7 2.2868 -1.0424 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 2.0711 2.1743 0.0005 31 1 4.7649 2.3208 -0.5153 32 1 5.6657 0.7857 -0.5156 33 1 6.4399 3.3026 0.9739 34 1 7.3401 1.7671 0.9739 35 1 8.5609 3.5880 2.5797 36 1 6.3383 3.4203 5.3013 37 1 6.9769 3.6112 7.6661 38 1 9.3452 3.5867 8.3270 39 1 11.0991 3.3720 6.6438 40 1 11.4125 5.0440 5.5211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344399660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:21 Heat of formation + Delta-G solvation = -0.043141 kcal Electronic energy + Delta-G solvation = -24819.830085 eV Core-core repulsion = 20988.960967 eV Total energy + Delta-G solvation = -3830.869118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.12693 -39.76770 -38.18772 -37.10299 -35.01577 -34.00560 -33.82938 -32.87137 -29.62080 -29.32999 -28.94753 -27.77720 -26.18470 -25.01279 -23.30697 -21.79908 -20.99153 -20.52867 -19.57461 -18.10534 -17.94915 -17.68128 -16.89531 -16.73218 -16.38160 -15.73062 -15.19026 -14.79423 -14.59465 -14.19065 -14.03882 -13.79127 -13.66077 -13.34653 -13.24691 -12.88603 -12.66587 -12.49823 -12.23786 -12.00218 -11.95849 -11.50064 -11.36925 -11.06418 -10.72665 -10.47731 -10.34258 -10.24215 -10.00163 -9.77423 -9.73347 -9.37240 -9.08428 -8.88834 -7.65407 -7.42933 -7.00905 -4.52225 1.09789 1.95606 2.50709 2.68773 2.76669 3.08754 3.16515 3.21193 3.29679 3.35356 3.93148 3.94152 4.05847 4.36054 4.50663 4.69173 4.74074 4.87830 4.99519 5.05290 5.14515 5.15834 5.19582 5.25559 5.43937 5.47470 5.50434 5.83884 6.18404 6.29857 6.45395 6.66958 6.82328 6.91435 7.10215 7.34380 7.48804 7.68300 7.72723 7.88569 7.98091 8.03269 8.18012 8.29161 8.62352 8.73292 8.90224 9.96014 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.002599 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.778358 B =10772.786078 C =11874.029662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.208 4.208 4 C -0.025 4.025 5 C 0.141 3.859 6 O -0.355 6.355 7 C 0.047 3.953 8 C 0.497 3.503 9 O -0.519 6.519 10 N -0.634 5.634 11 C 0.005 3.995 12 C -0.072 4.072 13 C -0.240 4.240 14 C -0.091 4.091 15 C -0.208 4.208 16 C 0.092 3.908 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.040 3.960 20 N -0.794 5.794 21 Si 1.064 2.936 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 O 0.109 5.891 26 N -0.361 5.361 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.403 0.597 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 -1.745 -13.657 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.229 4.229 4 C -0.089 4.089 5 C 0.063 3.937 6 O -0.273 6.273 7 C -0.033 4.033 8 C 0.282 3.718 9 O -0.394 6.394 10 N -0.278 5.278 11 C -0.088 4.088 12 C -0.092 4.092 13 C -0.260 4.260 14 C -0.110 4.110 15 C -0.228 4.228 16 C 0.087 3.913 17 C -0.554 4.554 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.417 5.417 21 Si 0.888 3.112 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.202 1.202 25 O 0.040 5.960 26 N -0.064 5.064 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.192 0.808 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.173 -3.329 -12.992 17.456 hybrid contribution -1.331 1.016 -0.336 1.708 sum -12.504 -2.314 -13.328 18.421 Atomic orbital electron populations 1.20168 0.85772 1.03983 1.03303 1.23637 0.99183 0.88775 1.03184 1.22481 0.91021 1.01335 1.08077 1.23946 0.97439 0.83842 1.03685 1.20653 0.89857 0.97519 0.85686 1.88098 1.39167 1.76286 1.23759 1.22262 0.87476 0.97448 0.96065 1.20081 0.82539 0.79295 0.89870 1.90694 1.48786 1.48836 1.51126 1.42660 1.24095 1.52931 1.08091 1.17553 0.93307 1.16250 0.81679 1.20712 0.97848 0.98153 0.92478 1.20272 0.95095 1.15690 0.94965 1.20413 0.93314 0.99727 0.97518 1.20757 0.98300 1.11405 0.92317 1.17483 0.90205 0.90754 0.92814 1.20316 0.96121 1.36011 1.02917 0.90751 1.26975 1.01922 0.93672 0.95641 1.70469 1.38052 1.14033 1.19107 0.83644 0.74676 0.76932 0.75994 1.19850 1.20013 1.20168 1.84832 1.21557 1.22605 1.66986 1.73861 0.89311 1.24180 1.19082 0.90165 0.90480 0.89892 0.80849 0.89375 0.90345 0.90079 0.89742 0.76191 0.87135 0.88951 0.89125 0.87314 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.48 36.01 0.38 -0.17 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -2.13 11.06 -39.38 -0.44 -2.57 16 4 C -0.03 -0.29 7.12 -35.31 -0.25 -0.54 16 5 C 0.14 1.32 6.50 36.01 0.23 1.55 16 6 O -0.36 -5.01 9.86 -55.14 -0.54 -5.55 16 7 C 0.05 0.60 6.42 36.00 0.23 0.83 16 8 C 0.50 9.28 7.75 -10.98 -0.09 9.19 16 9 O -0.52 -12.03 13.91 -14.35 -0.20 -12.23 16 10 N -0.63 -12.37 4.90 -9.48 -0.05 -12.42 16 11 C 0.01 0.13 6.33 -83.17 -0.53 -0.40 16 12 C -0.07 -1.72 8.69 -39.44 -0.34 -2.06 16 13 C -0.24 -5.57 10.04 -39.36 -0.39 -5.96 16 14 C -0.09 -2.11 9.97 -39.99 -0.40 -2.51 16 15 C -0.21 -5.20 7.87 -39.28 -0.31 -5.51 16 16 C 0.09 2.31 5.32 -106.65 -0.57 1.74 16 17 C -0.53 -12.75 8.35 -37.86 -0.32 -13.06 16 18 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 19 C 0.04 0.96 4.95 -17.33 -0.09 0.87 16 20 N -0.79 -19.87 12.32 55.55 0.68 -19.19 16 21 Si 1.06 20.19 30.00 -169.99 -5.10 15.09 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16 25 O 0.11 1.46 11.20 17.18 0.19 1.65 16 26 N -0.36 -4.90 12.07 33.42 0.40 -4.50 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 6.77 7.95 -40.82 -0.32 6.44 16 36 H 0.11 2.64 6.20 -52.49 -0.33 2.32 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 2.77 6.45 -52.49 -0.34 2.43 16 40 H 0.30 7.75 6.62 -40.82 -0.27 7.48 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -32.50 349.52 -7.49 -39.98 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.67 Total: 10.98 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.47 Total: -19.08 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 1.04 Total: -36.10 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.55 Total: -16.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.10 Total: 15.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.50 -7.49 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344399660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.940 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds