Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.46245 * 126.96265 * 269.71150 * 3 2 1 5 5 C 1.39706 * 134.18710 * 0.87257 * 4 3 2 6 6 C 1.36616 * 119.71035 * 179.52996 * 5 4 3 7 7 C 1.38832 * 120.44751 * 359.64704 * 6 5 4 8 8 C 1.37803 * 120.74036 * 0.02562 * 7 6 5 9 9 C 1.39026 * 119.85262 * 0.02562 * 8 7 6 10 10 O 1.34719 * 133.23816 * 180.02562 * 9 8 7 11 11 C 1.34946 * 110.86120 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.13012 * 180.02562 * 11 10 9 13 13 O 1.21651 * 120.00047 * 179.97438 * 12 11 10 14 14 N 1.34774 * 119.99768 * 359.96835 * 12 11 10 15 15 C 1.46504 * 119.99661 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47033 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00383 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99821 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99686 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00053 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99672 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99703 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47070 * 60.00545 * 23 21 19 25 25 H 1.48502 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47273 * 300.00213 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 1.08007 * 120.14449 * 359.17713 * 5 4 3 33 33 H 1.08001 * 119.77515 * 179.67553 * 6 5 4 34 34 H 1.08003 * 119.63353 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.07071 * 180.02562 * 8 7 6 36 36 H 0.96998 * 120.01000 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.47328 * 299.99666 * 15 14 12 38 38 H 1.08996 * 109.47298 * 60.00180 * 15 14 12 39 39 H 0.96993 * 120.00223 * 0.02562 * 18 16 15 40 40 H 0.97003 * 119.99772 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3310 2.2479 -1.1685 5 6 2.2516 2.0481 -2.5489 6 6 2.6075 3.0554 -3.4005 7 6 3.0401 4.2773 -2.9031 8 6 3.1191 4.4967 -1.5449 9 6 2.7633 3.4863 -0.6588 10 8 2.7357 3.4053 0.6857 11 6 2.3066 2.1899 1.0852 12 6 2.1565 1.7636 2.4838 13 8 1.7600 0.6421 2.7386 14 7 2.4583 2.6151 3.4839 15 6 2.3081 2.1903 4.8779 16 6 2.7086 3.3189 5.7928 17 8 3.0823 4.3744 5.3264 18 7 2.6507 3.1557 7.1295 19 6 3.0145 4.1826 7.9618 20 1 3.3480 5.1221 7.5464 21 6 2.9553 4.0142 9.3397 22 7 2.5510 2.8706 9.8451 23 14 3.4518 5.4131 10.4738 24 1 2.5824 6.5895 10.2185 25 1 3.3002 4.9823 11.8869 26 1 4.8679 5.7792 10.2177 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9157 1.0995 -2.9412 33 1 2.5514 2.9003 -4.4678 34 1 3.3178 5.0646 -3.5882 35 1 3.4567 5.4515 -1.1698 36 1 2.7749 3.5092 3.2808 37 1 1.2686 1.9213 5.0658 38 1 2.9465 1.3271 5.0655 39 1 2.3515 2.3118 7.5025 40 1 2.5093 2.7532 10.8071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451752349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -53.403824 kcal Electronic energy + Delta-G solvation = -25079.875126 eV Core-core repulsion = 21246.692116 eV Total energy + Delta-G solvation = -3833.183011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69224 -39.59236 -38.23258 -37.97856 -35.21930 -34.41169 -33.72347 -31.43050 -31.35743 -30.57274 -29.75875 -27.75146 -25.01242 -23.95046 -23.53533 -22.89194 -20.77969 -20.08716 -19.60284 -18.48581 -17.99398 -17.25267 -16.57480 -16.47926 -15.90824 -15.37645 -15.19086 -15.04062 -14.59037 -14.38056 -14.22645 -14.04457 -13.85761 -13.76290 -13.46696 -13.08441 -12.65520 -12.48214 -12.26147 -12.24640 -12.01460 -11.65582 -11.57877 -11.27576 -11.12156 -11.04077 -10.52033 -10.33818 -10.14557 -10.05715 -9.65121 -9.04052 -8.87718 -8.67715 -8.34556 -8.12828 -6.53660 -3.95794 0.39265 1.09339 1.67345 2.35795 3.11636 3.14648 3.15863 3.20837 3.26461 3.43354 3.70468 4.08464 4.27380 4.31439 4.59453 4.72003 4.80553 4.82525 4.99350 5.09345 5.14431 5.16442 5.26429 5.31491 5.43978 5.63299 5.78309 5.83873 5.87063 5.91182 5.93796 6.00233 6.09169 6.12912 6.17876 6.22963 6.32402 6.49600 6.85474 7.44018 7.61880 7.88372 8.15378 8.42328 9.02121 9.35827 9.83777 10.63069 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002577 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.087680 B =10861.279383 C =11985.084507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.060 4.060 6 C -0.142 4.142 7 C -0.086 4.086 8 C -0.110 4.110 9 C 0.071 3.929 10 O -0.179 6.179 11 C -0.022 4.022 12 C 0.595 3.405 13 O -0.519 6.519 14 N -0.692 5.692 15 C 0.107 3.893 16 C 0.426 3.574 17 O -0.595 6.595 18 N -0.547 5.547 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.417 0.583 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 -3.626 -23.542 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.086 4.086 4 C -0.139 4.139 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.105 4.105 8 C -0.128 4.128 9 C 0.023 3.977 10 O -0.080 6.080 11 C -0.072 4.072 12 C 0.380 3.620 13 O -0.398 6.398 14 N -0.344 5.344 15 C -0.020 4.020 16 C 0.212 3.788 17 O -0.482 6.482 18 N -0.182 5.182 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.761 3.239 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.256 0.744 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.688 -3.550 -23.186 23.517 hybrid contribution 0.231 0.617 0.747 0.996 sum -1.457 -2.933 -22.440 22.677 Atomic orbital electron populations 1.21643 0.94199 1.01905 1.01970 1.20185 0.96397 0.89501 1.03892 1.21364 1.00467 0.97372 0.89361 1.19805 1.05795 0.94009 0.94312 1.20331 0.97713 0.99496 0.90243 1.20774 1.01745 0.93472 0.99979 1.20992 0.98170 0.97586 0.93706 1.20045 1.03747 0.97831 0.91174 1.19754 1.00630 0.96132 0.81193 1.84086 1.70647 1.32482 1.20823 1.21807 1.06320 0.84266 0.94791 1.16579 0.78797 0.84951 0.81650 1.90834 1.47412 1.19169 1.82381 1.45647 1.65423 1.18026 1.05336 1.21064 1.02945 0.97621 0.80345 1.19675 0.86328 0.89179 0.83640 1.90517 1.53697 1.28622 1.75323 1.41775 1.56672 1.15975 1.03771 1.19689 1.41725 0.95162 0.86952 0.87689 1.25328 0.96855 0.97924 0.97547 1.69604 1.45992 1.23948 1.13887 0.85864 0.79346 0.80379 0.78344 1.19743 1.20825 1.19748 0.92182 0.93117 0.92050 0.91023 0.88371 0.85365 0.85228 0.84628 0.84610 0.74369 0.89274 0.89280 0.76991 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.06 -0.72 5.86 -27.88 -0.16 -0.88 16 3 C -0.08 -1.10 5.64 -102.28 -0.58 -1.68 16 4 C -0.14 -1.70 6.37 -105.19 -0.67 -2.37 16 5 C -0.06 -0.56 10.06 -39.62 -0.40 -0.96 16 6 C -0.14 -1.09 9.98 -39.95 -0.40 -1.49 16 7 C -0.09 -0.68 10.01 -39.52 -0.40 -1.08 16 8 C -0.11 -1.11 10.07 -39.45 -0.40 -1.51 16 9 C 0.07 0.93 7.41 -38.35 -0.28 0.65 16 10 O -0.18 -2.70 10.28 2.76 0.03 -2.67 16 11 C -0.02 -0.33 7.07 -36.91 -0.26 -0.60 16 12 C 0.60 9.90 7.79 -12.72 -0.10 9.80 16 13 O -0.52 -9.14 14.61 5.23 0.08 -9.07 16 14 N -0.69 -12.08 5.52 -62.70 -0.35 -12.42 16 15 C 0.11 1.96 6.15 -5.19 -0.03 1.92 16 16 C 0.43 9.77 7.85 -10.98 -0.09 9.68 16 17 O -0.60 -15.41 15.24 5.55 0.08 -15.32 16 18 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 19 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 20 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16 23 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.27 6.37 -51.93 -0.33 0.94 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.42 7.53 7.15 -40.82 -0.29 7.24 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.40 9.32 7.90 -40.82 -0.32 8.99 16 40 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.96 352.18 -7.53 -38.49 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -4.68 Total: 14.19 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -3.64 Total: 2.56 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.32 Total: -48.97 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.19 Total: -27.06 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.96 -7.53 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451752349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.914 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds