Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.46245 * 126.96265 * 269.71150 * 3 2 1 5 5 C 1.39706 * 134.18710 * 0.87257 * 4 3 2 6 6 C 1.36616 * 119.71035 * 179.52996 * 5 4 3 7 7 C 1.38832 * 120.44751 * 359.64704 * 6 5 4 8 8 C 1.37803 * 120.74036 * 0.02562 * 7 6 5 9 9 C 1.39026 * 119.85262 * 0.02562 * 8 7 6 10 10 O 1.34719 * 133.23816 * 180.02562 * 9 8 7 11 11 C 1.34946 * 110.86120 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.13012 * 180.02562 * 11 10 9 13 13 O 1.21651 * 120.00047 * 179.97438 * 12 11 10 14 14 N 1.34774 * 119.99768 * 359.96835 * 12 11 10 15 15 C 1.46504 * 119.99661 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47033 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00383 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99821 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99686 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00053 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99672 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99703 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47070 * 60.00545 * 23 21 19 25 25 H 1.48502 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47273 * 300.00213 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 1.08007 * 120.14449 * 359.17713 * 5 4 3 33 33 H 1.08001 * 119.77515 * 179.67553 * 6 5 4 34 34 H 1.08003 * 119.63353 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.07071 * 180.02562 * 8 7 6 36 36 H 0.96998 * 120.01000 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.47328 * 299.99666 * 15 14 12 38 38 H 1.08996 * 109.47298 * 60.00180 * 15 14 12 39 39 H 0.96993 * 120.00223 * 0.02562 * 18 16 15 40 40 H 0.97003 * 119.99772 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3310 2.2479 -1.1685 5 6 2.2516 2.0481 -2.5489 6 6 2.6075 3.0554 -3.4005 7 6 3.0401 4.2773 -2.9031 8 6 3.1191 4.4967 -1.5449 9 6 2.7633 3.4863 -0.6588 10 8 2.7357 3.4053 0.6857 11 6 2.3066 2.1899 1.0852 12 6 2.1565 1.7636 2.4838 13 8 1.7600 0.6421 2.7386 14 7 2.4583 2.6151 3.4839 15 6 2.3081 2.1903 4.8779 16 6 2.7086 3.3189 5.7928 17 8 3.0823 4.3744 5.3264 18 7 2.6507 3.1557 7.1295 19 6 3.0145 4.1826 7.9618 20 1 3.3480 5.1221 7.5464 21 6 2.9553 4.0142 9.3397 22 7 2.5510 2.8706 9.8451 23 14 3.4518 5.4131 10.4738 24 1 2.5824 6.5895 10.2185 25 1 3.3002 4.9823 11.8869 26 1 4.8679 5.7792 10.2177 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9157 1.0995 -2.9412 33 1 2.5514 2.9003 -4.4678 34 1 3.3178 5.0646 -3.5882 35 1 3.4567 5.4515 -1.1698 36 1 2.7749 3.5092 3.2808 37 1 1.2686 1.9213 5.0658 38 1 2.9465 1.3271 5.0655 39 1 2.3515 2.3118 7.5025 40 1 2.5093 2.7532 10.8071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451752349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -73.791397 kcal Electronic energy + Delta-G solvation = -25080.759198 eV Core-core repulsion = 21246.692116 eV Total energy + Delta-G solvation = -3834.067082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.63762 -41.01439 -39.93655 -38.81446 -36.46882 -35.98859 -35.26983 -33.41942 -32.15058 -31.40567 -30.81096 -29.18363 -26.71250 -25.14085 -24.41780 -23.73637 -21.91489 -21.49189 -20.92806 -20.14776 -19.53888 -18.13787 -17.64107 -17.58210 -17.44867 -16.76104 -16.64729 -16.53130 -15.97842 -15.55819 -15.42221 -15.34745 -15.00765 -14.86914 -14.61621 -14.03924 -13.95174 -13.70059 -13.56627 -13.52447 -13.20773 -12.92670 -12.90837 -12.49828 -12.40543 -12.17235 -12.13020 -11.89594 -11.59675 -11.27975 -11.00072 -10.62293 -10.40941 -10.12689 -9.69197 -9.24373 -8.53472 -6.03980 -0.52740 0.33099 0.74155 1.35366 1.36045 1.41772 1.52427 1.85019 1.90816 1.93857 2.28442 2.70386 3.03526 3.13366 3.28912 3.46691 3.70466 3.86776 4.08924 4.15650 4.27598 4.32393 4.35667 4.36115 4.40484 4.43547 4.51576 4.61902 4.87446 4.98235 5.03977 5.08421 5.19196 5.28794 5.35466 5.36449 5.39423 5.46901 5.56603 5.88135 5.98817 6.28085 6.45109 6.80368 7.00624 7.39740 7.90931 8.63087 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002577 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.087680 B =10861.279383 C =11985.084507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.067 4.067 4 C -0.160 4.160 5 C -0.061 4.061 6 C -0.134 4.134 7 C -0.069 4.069 8 C -0.130 4.130 9 C 0.043 3.957 10 O -0.202 6.202 11 C -0.063 4.063 12 C 0.599 3.401 13 O -0.534 6.534 14 N -0.699 5.699 15 C 0.121 3.879 16 C 0.430 3.570 17 O -0.627 6.627 18 N -0.556 5.556 19 C -0.340 4.340 20 H 0.085 0.915 21 C -0.009 4.009 22 N -0.914 5.914 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.144 0.856 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.400 0.600 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -3.872 -26.268 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.070 4.070 4 C -0.161 4.161 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.087 4.087 8 C -0.149 4.149 9 C -0.005 4.005 10 O -0.104 6.104 11 C -0.112 4.112 12 C 0.386 3.614 13 O -0.414 6.414 14 N -0.351 5.351 15 C -0.006 4.006 16 C 0.217 3.783 17 O -0.515 6.515 18 N -0.191 5.191 19 C -0.469 4.469 20 H 0.103 0.897 21 C -0.210 4.210 22 N -0.554 5.554 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.195 1.195 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.162 0.838 36 H 0.251 0.749 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.235 0.765 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.810 -3.826 -25.924 26.267 hybrid contribution 0.272 0.708 1.342 1.541 sum -1.538 -3.118 -24.582 24.827 Atomic orbital electron populations 1.21607 0.93380 1.02908 1.01317 1.20276 0.96996 0.88427 1.04351 1.21754 0.97978 0.97817 0.89440 1.20018 1.07171 0.93477 0.95391 1.20731 0.97087 1.01183 0.88891 1.21282 0.99650 0.92549 1.01700 1.21519 0.95562 0.98644 0.92984 1.20419 1.04614 0.97828 0.92011 1.20356 1.01763 0.97709 0.80632 1.84014 1.71562 1.32554 1.22319 1.21541 1.09946 0.85429 0.94317 1.16726 0.77975 0.84514 0.82162 1.90807 1.48119 1.19558 1.82939 1.45653 1.66218 1.18071 1.05150 1.20922 1.03983 0.95809 0.79894 1.20386 0.84611 0.89743 0.83580 1.90491 1.54676 1.30410 1.75908 1.41808 1.57239 1.15783 1.04277 1.19695 1.43745 0.95378 0.88081 0.89720 1.26126 0.96227 1.00319 0.98298 1.69666 1.45989 1.25186 1.14520 0.84933 0.78885 0.77436 0.76770 1.19517 1.19417 1.19530 0.94680 0.91866 0.90214 0.88200 0.90180 0.82870 0.81431 0.81021 0.83810 0.74863 0.87735 0.87717 0.76513 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.89 71.98 0.71 -1.98 16 2 C -0.06 -1.40 5.86 29.85 0.18 -1.22 16 3 C -0.07 -1.79 5.64 -18.35 -0.10 -1.89 16 4 C -0.16 -3.76 6.37 -20.24 -0.13 -3.89 16 5 C -0.06 -0.94 10.06 22.25 0.22 -0.72 16 6 C -0.13 -1.48 9.98 22.03 0.22 -1.26 16 7 C -0.07 -0.84 10.01 22.31 0.22 -0.62 16 8 C -0.13 -2.50 10.07 22.36 0.23 -2.27 16 9 C 0.04 1.14 7.41 23.07 0.17 1.31 16 10 O -0.20 -6.46 10.28 -13.02 -0.13 -6.59 16 11 C -0.06 -2.02 7.07 24.00 0.17 -1.85 16 12 C 0.60 20.87 7.79 86.53 0.67 21.54 16 13 O -0.53 -19.41 14.61 -4.19 -0.06 -19.48 16 14 N -0.70 -25.55 5.52 -470.53 -2.60 -28.15 16 15 C 0.12 4.51 6.15 85.63 0.53 5.04 16 16 C 0.43 20.37 7.85 87.66 0.69 21.05 16 17 O -0.63 -33.78 15.24 -3.07 -0.05 -33.83 16 18 N -0.56 -28.21 5.29 -306.98 -1.62 -29.83 16 19 C -0.34 -18.93 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 22 N -0.91 -48.58 13.05 21.66 0.28 -48.30 16 23 Si 1.00 42.03 29.55 68.60 2.03 44.06 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.08 6.37 -2.39 -0.02 2.06 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.41 15.88 7.15 -92.71 -0.66 15.22 16 37 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 38 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 40 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -69.45 352.18 2.61 -66.84 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.29 Total: 40.14 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 5.06 Total: 15.12 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.94 Total: -106.27 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.24 Total: -59.89 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.45 2.61 -66.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451752349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.951 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds