Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47365 * 2 1 4 4 C 1.50707 * 109.47303 * 240.00098 * 2 1 3 5 5 H 1.08000 * 119.99508 * 240.00469 * 4 2 1 6 6 C 1.37871 * 119.99749 * 60.00015 * 4 2 1 7 7 N 1.31513 * 120.00315 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99646 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46905 * 90.00185 * 8 6 4 10 10 H 1.48500 * 109.46722 * 209.99873 * 8 6 4 11 11 H 1.48493 * 109.47100 * 329.99932 * 8 6 4 12 12 C 1.53002 * 109.47161 * 120.00253 * 2 1 3 13 13 N 1.46502 * 109.46872 * 300.00097 * 12 2 1 14 14 C 1.34778 * 119.99999 * 180.02562 * 13 12 2 15 15 O 1.21548 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.47842 * 119.99852 * 179.97438 * 14 13 12 17 17 C 1.39562 * 120.56137 * 359.97438 * 16 14 13 18 18 N 1.31659 * 120.56464 * 180.02562 * 17 16 14 19 19 C 1.31964 * 121.88028 * 359.97438 * 18 17 16 20 20 C 1.38304 * 121.08162 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.34981 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.46901 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.47037 * 119.99718 * 21 20 19 24 24 F 1.39893 * 109.47127 * 239.99932 * 21 20 19 25 25 C 1.38401 * 119.30570 * 359.97438 * 20 19 18 26 26 H 1.09001 * 109.46883 * 300.00163 * 1 2 3 27 27 H 1.08998 * 109.46878 * 60.00025 * 1 2 3 28 28 H 1.08994 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47103 * 299.99838 * 3 2 1 31 31 H 1.09001 * 109.46795 * 59.99789 * 3 2 1 32 32 H 0.96997 * 120.00341 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47077 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47267 * 59.99590 * 12 2 1 35 35 H 0.96997 * 119.99966 * 359.97438 * 13 12 2 36 36 H 1.07994 * 119.71831 * 0.04336 * 17 16 14 37 37 H 1.08006 * 119.45770 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.85541 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5764 -1.4791 3.7810 16 6 1.3852 0.2064 4.8766 17 6 0.5826 1.3423 4.7622 18 7 0.1445 1.9636 5.8371 19 6 0.4404 1.5452 7.0532 20 6 1.2302 0.4273 7.2512 21 6 1.5583 -0.0356 8.6473 22 9 0.9546 0.8190 9.5759 23 9 1.0792 -1.3370 8.8317 24 9 2.9451 -0.0189 8.8303 25 6 1.7162 -0.2618 6.1537 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7088 1.1613 -3.4843 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9943 0.7581 2.3564 36 1 0.3184 1.7148 3.7835 37 1 0.0594 2.0846 7.9078 38 1 2.3356 -1.1376 6.2794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458041808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -156.353367 kcal Electronic energy + Delta-G solvation = -26009.834776 eV Core-core repulsion = 21630.330798 eV Total energy + Delta-G solvation = -4379.503978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.53112 -48.06209 -47.96835 -40.98413 -39.08962 -36.52253 -33.84313 -33.36422 -32.39037 -30.81427 -26.81440 -26.22643 -25.82475 -25.34503 -23.91507 -23.34915 -20.77072 -19.21931 -18.84865 -18.84798 -18.72772 -17.41883 -17.16522 -16.55905 -15.89090 -15.24984 -15.09251 -14.85987 -14.77453 -14.68101 -14.41957 -14.19389 -14.15717 -14.11627 -13.76698 -13.61668 -13.30453 -12.97849 -12.90558 -12.55939 -12.29322 -11.50091 -11.28895 -10.94271 -10.76146 -10.57612 -10.48452 -10.44836 -10.25013 -9.82428 -9.77560 -9.74084 -9.41095 -8.88508 -8.64318 -8.43024 -6.09020 -4.19511 0.08220 0.48720 2.19434 2.64468 3.17647 3.24362 3.30537 3.31991 3.36655 3.43747 3.65903 3.85105 4.02343 4.21844 4.33041 4.34274 4.60387 4.70907 4.96125 5.18152 5.35710 5.50884 5.85944 6.08828 6.19267 6.38880 6.59725 6.70828 6.78973 6.83139 6.91369 7.23847 7.24834 7.46209 7.61690 7.76449 7.92205 8.04397 8.27264 8.37672 8.80910 9.46963 10.92481 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.002622 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.050994 B =10676.057577 C =11141.394087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.552 3.448 15 O -0.539 6.539 16 C -0.177 4.177 17 C 0.165 3.835 18 N -0.478 5.478 19 C 0.168 3.832 20 C -0.250 4.250 21 C 0.519 3.481 22 F -0.174 7.174 23 F -0.172 7.172 24 F -0.172 7.172 25 C 0.031 3.969 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 2.700 19.521 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.355 5.355 14 C 0.336 3.664 15 O -0.417 6.417 16 C -0.182 4.182 17 C 0.007 3.993 18 N -0.186 5.186 19 C 0.010 3.990 20 C -0.254 4.254 21 C 0.464 3.536 22 F -0.155 7.155 23 F -0.154 7.154 24 F -0.153 7.153 25 C 0.005 3.995 26 H 0.024 0.976 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.190 0.810 37 H 0.192 0.808 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.988 2.838 19.319 19.627 hybrid contribution 0.614 -0.887 -0.560 1.216 sum -1.375 1.951 18.759 18.910 Atomic orbital electron populations 1.21853 0.97661 0.99331 1.00150 1.18379 0.92860 0.92807 0.90452 1.21852 0.98732 0.98251 1.00147 1.20959 1.31707 1.12204 0.89792 0.92343 1.24872 0.94790 0.94879 0.98889 1.69788 1.36534 1.22677 1.23366 0.86559 0.79342 0.79399 0.82520 1.20679 1.21232 1.19875 1.21859 0.98494 0.95968 0.82845 1.46275 1.51887 1.31535 1.05806 1.17846 0.81191 0.84347 0.83033 1.90782 1.38287 1.26041 1.86625 1.21226 1.02798 0.99108 0.95059 1.23430 0.88492 0.88936 0.98420 1.67953 1.21871 1.30583 0.98163 1.22947 0.89560 0.90380 0.96107 1.21011 1.08592 1.02862 0.92906 1.17949 0.74715 0.75295 0.85605 1.93179 1.83381 1.70480 1.68509 1.93249 1.88026 1.38122 1.95959 1.93248 1.29925 1.96198 1.95975 1.21481 0.91603 0.96594 0.89820 0.97604 0.89418 0.95286 0.95283 0.89419 0.97610 0.92908 0.92169 0.92175 0.76578 0.81026 0.80811 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.06 1.21 0.50 -155.65 -0.08 1.14 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.77 8.01 -34.44 -0.28 -13.04 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -22.80 9.35 55.43 0.52 -22.29 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 C 0.13 2.56 4.50 -4.04 -0.02 2.55 16 13 N -0.70 -11.35 4.91 -61.25 -0.30 -11.65 16 14 C 0.55 8.76 7.78 -12.33 -0.10 8.66 16 15 O -0.54 -10.34 16.42 5.32 0.09 -10.25 16 16 C -0.18 -2.20 5.89 -104.82 -0.62 -2.82 16 17 C 0.16 1.80 10.71 -17.13 -0.18 1.62 16 18 N -0.48 -5.13 10.35 -12.91 -0.13 -5.26 16 19 C 0.17 1.54 10.59 -17.47 -0.18 1.35 16 20 C -0.25 -2.44 5.38 -104.54 -0.56 -3.00 16 21 C 0.52 4.79 3.33 36.01 0.12 4.91 16 22 F -0.17 -1.47 15.99 2.25 0.04 -1.43 16 23 F -0.17 -1.72 17.24 2.25 0.04 -1.68 16 24 F -0.17 -1.72 17.24 2.25 0.04 -1.68 16 25 C 0.03 0.36 9.30 -38.87 -0.36 -0.01 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 27 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 31 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.51 8.31 -40.82 -0.34 6.18 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.40 5.60 4.23 -40.82 -0.17 5.42 16 36 H 0.17 1.58 6.42 -52.49 -0.34 1.24 16 37 H 0.17 1.12 7.15 -52.48 -0.38 0.75 16 38 H 0.16 1.78 7.74 -52.49 -0.41 1.37 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -27.53 329.70 -5.38 -32.91 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.87 Total: 3.27 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.75 Total: -2.03 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.08 Total: -39.20 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.53 -5.38 -32.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458041808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.445 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds