Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47365 * 2 1 4 4 C 1.50707 * 109.47303 * 240.00098 * 2 1 3 5 5 H 1.08000 * 119.99508 * 240.00469 * 4 2 1 6 6 C 1.37871 * 119.99749 * 60.00015 * 4 2 1 7 7 N 1.31513 * 120.00315 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99646 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46905 * 90.00185 * 8 6 4 10 10 H 1.48500 * 109.46722 * 209.99873 * 8 6 4 11 11 H 1.48493 * 109.47100 * 329.99932 * 8 6 4 12 12 C 1.53002 * 109.47161 * 120.00253 * 2 1 3 13 13 N 1.46502 * 109.46872 * 300.00097 * 12 2 1 14 14 C 1.34778 * 119.99999 * 180.02562 * 13 12 2 15 15 O 1.21548 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.47842 * 119.99852 * 179.97438 * 14 13 12 17 17 C 1.39562 * 120.56137 * 359.97438 * 16 14 13 18 18 N 1.31659 * 120.56464 * 180.02562 * 17 16 14 19 19 C 1.31964 * 121.88028 * 359.97438 * 18 17 16 20 20 C 1.38304 * 121.08162 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.34981 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.46901 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.47037 * 119.99718 * 21 20 19 24 24 F 1.39893 * 109.47127 * 239.99932 * 21 20 19 25 25 C 1.38401 * 119.30570 * 359.97438 * 20 19 18 26 26 H 1.09001 * 109.46883 * 300.00163 * 1 2 3 27 27 H 1.08998 * 109.46878 * 60.00025 * 1 2 3 28 28 H 1.08994 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47103 * 299.99838 * 3 2 1 31 31 H 1.09001 * 109.46795 * 59.99789 * 3 2 1 32 32 H 0.96997 * 120.00341 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47077 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47267 * 59.99590 * 12 2 1 35 35 H 0.96997 * 119.99966 * 359.97438 * 13 12 2 36 36 H 1.07994 * 119.71831 * 0.04336 * 17 16 14 37 37 H 1.08006 * 119.45770 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.85541 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5764 -1.4791 3.7810 16 6 1.3852 0.2064 4.8766 17 6 0.5826 1.3423 4.7622 18 7 0.1445 1.9636 5.8371 19 6 0.4404 1.5452 7.0532 20 6 1.2302 0.4273 7.2512 21 6 1.5583 -0.0356 8.6473 22 9 0.9546 0.8190 9.5759 23 9 1.0792 -1.3370 8.8317 24 9 2.9451 -0.0189 8.8303 25 6 1.7162 -0.2618 6.1537 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7088 1.1613 -3.4843 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9943 0.7581 2.3564 36 1 0.3184 1.7148 3.7835 37 1 0.0594 2.0846 7.9078 38 1 2.3356 -1.1376 6.2794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458041808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -171.856387 kcal Electronic energy + Delta-G solvation = -26010.507037 eV Core-core repulsion = 21630.330798 eV Total energy + Delta-G solvation = -4380.176240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.27228 -48.77960 -48.73561 -41.94024 -40.33429 -38.15454 -35.24208 -34.34247 -33.55992 -32.41015 -27.74600 -27.54587 -27.53041 -27.12644 -25.10681 -24.20660 -21.95652 -20.69780 -19.95937 -19.59553 -19.59482 -18.33687 -18.16538 -17.66882 -17.53313 -16.53804 -16.49620 -16.42203 -15.66483 -15.46663 -15.16941 -15.14134 -15.13726 -14.92898 -14.87488 -14.79994 -14.47259 -14.43102 -14.13391 -13.92501 -13.40225 -13.20009 -13.09402 -12.69149 -12.59784 -12.24637 -12.13358 -11.57830 -11.48042 -11.42555 -11.18158 -10.80929 -10.72945 -10.68322 -10.39078 -10.03304 -8.01803 -6.17153 -0.76468 -0.38434 1.42632 1.43188 1.46967 1.54201 1.59838 2.04212 2.43044 2.47148 2.50772 2.85354 3.06179 3.22443 3.27052 3.42355 3.46547 3.61899 3.84094 4.09265 4.41903 4.51129 4.53956 4.64990 4.72206 4.99021 5.04711 5.06468 5.11852 5.20872 5.29291 5.53699 5.69046 5.69071 6.17504 6.22286 6.41277 6.44219 6.48958 6.86955 7.08782 7.50843 8.96950 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.002622 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.050994 B =10676.057577 C =11141.394087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.123 4.123 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.556 3.444 15 O -0.577 6.577 16 C -0.191 4.191 17 C 0.175 3.825 18 N -0.487 5.487 19 C 0.181 3.819 20 C -0.248 4.248 21 C 0.526 3.474 22 F -0.166 7.166 23 F -0.177 7.177 24 F -0.177 7.177 25 C 0.030 3.970 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.410 0.590 36 H 0.189 0.811 37 H 0.205 0.795 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 3.790 21.107 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.350 5.350 14 C 0.343 3.657 15 O -0.458 6.458 16 C -0.196 4.196 17 C 0.017 3.983 18 N -0.195 5.195 19 C 0.024 3.976 20 C -0.251 4.251 21 C 0.471 3.529 22 F -0.147 7.147 23 F -0.158 7.158 24 F -0.158 7.158 25 C 0.004 3.996 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.248 0.752 36 H 0.206 0.794 37 H 0.222 0.778 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.779 3.951 20.919 21.469 hybrid contribution 0.844 -1.212 -0.954 1.758 sum -1.935 2.739 19.965 20.244 Atomic orbital electron populations 1.21702 0.96991 0.98842 1.00599 1.18369 0.93338 0.93086 0.90159 1.21701 0.98075 0.97755 1.00594 1.21280 1.31732 1.12206 0.91541 0.93615 1.25410 0.95167 0.95555 1.00868 1.69893 1.36951 1.23218 1.23596 0.85804 0.78665 0.78500 0.80096 1.20608 1.20974 1.20092 1.21391 0.97472 0.95307 0.83540 1.46024 1.52147 1.31760 1.05031 1.18237 0.80126 0.83722 0.83615 1.90763 1.40023 1.27862 1.87195 1.20852 1.04839 1.00243 0.93684 1.23640 0.87300 0.87907 0.99411 1.68070 1.22209 1.30661 0.98521 1.23460 0.87960 0.89619 0.96549 1.21009 1.08576 1.02922 0.92633 1.17802 0.74484 0.75161 0.85444 1.93197 1.83186 1.70149 1.68171 1.93245 1.88058 1.38554 1.95970 1.93244 1.30378 1.96208 1.95986 1.21515 0.91451 0.96616 0.90066 0.94143 0.91871 0.96199 0.96184 0.91871 0.94150 0.93041 0.93647 0.93633 0.75183 0.79381 0.77822 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.22 0.50 -52.92 -0.03 2.19 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 4 C -0.53 -26.92 8.01 25.60 0.21 -26.71 16 5 H 0.05 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -46.42 9.35 21.45 0.20 -46.22 16 8 Si 0.94 41.59 29.54 68.60 2.03 43.62 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 C 0.15 5.76 4.50 86.38 0.39 6.15 16 13 N -0.70 -21.65 4.91 -465.97 -2.29 -23.94 16 14 C 0.56 17.24 7.78 86.79 0.68 17.92 16 15 O -0.58 -22.31 16.42 -3.87 -0.06 -22.38 16 16 C -0.19 -4.45 5.89 -19.99 -0.12 -4.57 16 17 C 0.18 3.34 10.71 85.04 0.91 4.25 16 18 N -0.49 -8.88 10.35 -194.76 -2.01 -10.90 16 19 C 0.18 2.72 10.59 84.69 0.90 3.62 16 20 C -0.25 -4.25 5.38 -19.81 -0.11 -4.36 16 21 C 0.53 8.58 3.33 71.24 0.24 8.81 16 22 F -0.17 -2.32 15.99 44.97 0.72 -1.60 16 23 F -0.18 -3.24 17.24 44.97 0.78 -2.47 16 24 F -0.18 -3.24 17.24 44.97 0.78 -2.47 16 25 C 0.03 0.64 9.30 22.73 0.21 0.85 16 26 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 27 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 31 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 32 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.41 10.53 4.23 -92.71 -0.39 10.14 16 36 H 0.19 2.83 6.42 -2.91 -0.02 2.82 16 37 H 0.21 1.77 7.15 -2.91 -0.02 1.75 16 38 H 0.16 3.40 7.74 -2.91 -0.02 3.38 16 Total: -1.00 -59.08 329.70 5.74 -53.35 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.73 Total: 11.98 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 4.87 Total: 1.02 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -4.10 Total: -81.05 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 2.27 Total: -6.53 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -59.08 5.74 -53.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458041808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.510 kcal (2) G-P(sol) polarization free energy of solvation -59.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds