Wall clock time and date at job start Tue Mar 31 2020 11:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09000 * 109.71461 * 240.74170 * 3 2 1 5 5 C 1.53299 * 109.68268 * 1.28019 * 3 2 1 6 6 O 1.42962 * 109.22281 * 172.02357 * 5 3 2 7 7 C 1.42960 * 114.16766 * 297.41843 * 6 5 3 8 8 C 1.52876 * 109.29782 * 62.44986 * 7 6 5 9 9 N 1.47153 * 109.68053 * 120.20484 * 3 2 1 10 10 C 1.34773 * 120.98232 * 9.72068 * 9 3 2 11 11 O 1.21588 * 120.00285 * 10.19368 * 10 9 3 12 12 N 1.34781 * 120.00301 * 190.19649 * 10 9 3 13 13 C 1.39939 * 120.00246 * 186.57555 * 12 10 9 14 14 C 1.38956 * 120.03289 * 331.74511 * 13 12 10 15 15 C 1.38166 * 120.06713 * 179.97438 * 14 13 12 16 16 C 1.38168 * 120.13574 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.07134 * 0.04965 * 16 15 14 18 18 O 1.35743 * 120.03371 * 180.02562 * 17 16 15 19 19 C 1.34836 * 117.00015 * 173.01908 * 18 17 16 20 20 H 1.07994 * 120.00209 * 5.15561 * 19 18 17 21 21 C 1.38650 * 119.99677 * 185.16399 * 19 18 17 22 22 N 1.31556 * 120.00437 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47115 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46926 * 119.99798 * 23 21 19 26 26 H 1.48494 * 109.47004 * 239.99618 * 23 21 19 27 27 C 1.38709 * 120.03692 * 151.72531 * 13 12 10 28 28 H 4.19120 * 14.97954 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.51347 * 291.94902 * 5 3 2 30 30 H 1.08996 * 109.51564 * 52.10193 * 5 3 2 31 31 H 1.09000 * 109.51692 * 182.50074 * 7 6 5 32 32 H 1.08998 * 109.51721 * 302.65599 * 7 6 5 33 33 H 1.09007 * 109.62257 * 188.11647 * 8 7 6 34 34 H 1.08999 * 109.52793 * 67.70291 * 8 7 6 35 35 H 0.97007 * 119.99552 * 6.57435 * 12 10 9 36 36 H 1.07996 * 119.96828 * 359.97438 * 14 13 12 37 37 H 1.08000 * 119.93415 * 180.02562 * 15 14 13 38 38 H 1.08000 * 119.96573 * 180.02562 * 16 15 14 39 39 H 0.97000 * 120.00039 * 180.02562 * 22 21 19 40 40 H 1.07999 * 120.06415 * 359.74519 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.5023 0.8952 5 6 3.1630 -1.4422 -0.0322 6 8 4.5803 -1.4303 -0.2194 7 6 5.0023 -0.8536 -1.4575 8 6 4.5787 0.6147 -1.5014 9 7 3.1413 0.6980 -1.1975 10 6 2.3023 1.3878 -1.9953 11 8 1.1591 1.5981 -1.6384 12 7 2.7303 1.8445 -3.1890 13 6 1.9068 2.6761 -3.9562 14 6 0.5250 2.5811 -3.8445 15 6 -0.2887 3.4022 -4.6013 16 6 0.2684 4.3203 -5.4707 17 6 1.6491 4.4197 -5.5872 18 8 2.1956 5.3223 -6.4412 19 6 3.5353 5.4693 -6.4015 20 1 4.1309 4.8247 -5.7721 21 6 4.1483 6.4481 -7.1686 22 7 3.4229 7.2331 -7.9356 23 14 6.0043 6.6522 -7.1131 24 1 6.5845 5.6529 -6.1804 25 1 6.5660 6.4447 -8.4721 26 1 6.3379 8.0208 -6.6433 27 6 2.4691 3.5963 -4.8286 28 1 -1.0499 0.0002 -0.0007 29 1 2.9243 -1.9356 0.9099 30 1 2.6917 -1.9795 -0.8551 31 1 6.0869 -0.9234 -1.5408 32 1 4.5377 -1.3887 -2.2856 33 1 4.7679 1.0207 -2.4951 34 1 5.1440 1.1793 -0.7599 35 1 3.6093 1.5968 -3.5162 36 1 0.0867 1.8648 -3.1655 37 1 -1.3624 3.3269 -4.5125 38 1 -0.3702 4.9610 -6.0606 39 1 3.8518 7.9177 -8.4726 40 1 3.5428 3.6751 -4.9138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491627581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:46 Heat of formation + Delta-G solvation = 23.433365 kcal Electronic energy + Delta-G solvation = -25900.079455 eV Core-core repulsion = 22070.228355 eV Total energy + Delta-G solvation = -3829.851100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.05053 -39.36349 -38.46298 -36.58449 -35.06542 -34.81575 -33.20216 -32.21499 -30.81328 -29.41953 -28.72704 -27.64781 -25.31551 -24.88649 -23.06435 -21.83019 -21.58769 -20.13400 -19.24928 -17.95921 -17.63246 -17.26722 -16.72275 -16.34856 -15.94230 -15.51361 -15.38682 -15.04110 -14.83400 -14.46543 -14.30390 -14.07777 -13.78275 -13.52254 -13.27607 -12.93140 -12.63355 -12.39622 -11.99384 -11.76415 -11.62056 -11.47179 -11.31321 -11.07893 -10.82307 -10.74983 -10.55121 -10.45903 -10.35304 -9.73701 -9.48305 -8.98720 -8.82252 -8.78590 -7.68101 -7.11887 -6.44888 -4.04817 1.99697 2.16778 2.44165 2.85231 3.09025 3.10541 3.10981 3.16413 3.23321 3.36994 3.75686 3.94989 4.14901 4.39634 4.60183 4.63017 4.63294 4.70914 4.86120 5.08125 5.08937 5.27491 5.31356 5.33176 5.48612 5.66830 5.84831 6.02300 6.05249 6.09291 6.25023 6.35810 6.49615 6.60531 6.77330 7.01688 7.11268 7.19514 7.37437 7.44828 7.74163 7.85460 7.91406 7.99794 8.54891 9.00599 9.71882 10.73404 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003505 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.973063 B = 7986.665069 C = 9539.251708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.193 4.193 3 C 0.251 3.749 4 H 0.099 0.901 5 C 0.058 3.942 6 O -0.374 6.374 7 C 0.045 3.955 8 C 0.075 3.925 9 N -0.635 5.635 10 C 0.706 3.294 11 O -0.542 6.542 12 N -0.679 5.679 13 C 0.195 3.805 14 C -0.214 4.214 15 C -0.064 4.064 16 C -0.203 4.203 17 C 0.170 3.830 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.262 4.262 28 H 0.215 0.785 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.399 0.601 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -16.712 13.957 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.193 4.193 3 C 0.148 3.852 4 H 0.116 0.884 5 C -0.020 4.020 6 O -0.292 6.292 7 C -0.033 4.033 8 C -0.048 4.048 9 N -0.376 5.376 10 C 0.409 3.591 11 O -0.416 6.416 12 N -0.327 5.327 13 C 0.101 3.899 14 C -0.234 4.234 15 C -0.083 4.083 16 C -0.223 4.223 17 C 0.116 3.884 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.284 4.284 28 H 0.232 0.768 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.236 0.764 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.779 -16.284 14.057 21.585 hybrid contribution 1.245 0.275 -0.417 1.341 sum 3.023 -16.009 13.640 21.248 Atomic orbital electron populations 1.24635 0.95532 0.98767 0.97882 1.21723 0.93081 1.02018 1.02525 1.18369 0.85455 0.93444 0.87958 0.88361 1.23018 0.81455 0.94077 1.03478 1.87997 1.21551 1.81205 1.38445 1.22977 1.01283 0.92032 0.87017 1.22340 0.81197 0.98349 1.02918 1.47468 1.07435 1.55690 1.26986 1.15831 0.84480 0.78737 0.80066 1.90969 1.16955 1.60149 1.73553 1.42806 1.20332 1.51462 1.18093 1.17265 0.89770 0.90657 0.92179 1.21036 0.91386 1.05585 1.05436 1.20588 0.98545 0.94498 0.94646 1.20269 0.92356 1.04506 1.05171 1.19016 0.91994 0.88946 0.88427 1.84007 1.23802 1.50708 1.49649 1.21304 0.79098 1.18347 1.28045 0.89280 1.25268 1.00375 0.95040 0.95827 1.70045 1.35778 1.18779 1.25193 0.85669 0.80795 0.78627 0.78403 1.19269 1.20164 1.20155 1.20719 1.00468 1.01439 1.05762 0.76845 0.86972 0.92022 0.87057 0.92255 0.89020 0.89811 0.76403 0.84455 0.86728 0.86492 0.92099 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 17.93 29.55 0.53 -1.32 16 2 C -0.19 -2.48 10.06 -37.12 -0.37 -2.85 16 3 C 0.25 2.70 3.53 -70.21 -0.25 2.45 16 4 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.06 0.48 6.25 37.31 0.23 0.72 16 6 O -0.37 -3.28 10.74 -35.23 -0.38 -3.66 16 7 C 0.04 0.31 6.97 37.09 0.26 0.57 16 8 C 0.08 0.62 6.61 -3.75 -0.02 0.60 16 9 N -0.64 -7.53 3.03 -173.88 -0.53 -8.05 16 10 C 0.71 11.06 7.98 -86.92 -0.69 10.36 16 11 O -0.54 -9.99 9.74 5.29 0.05 -9.94 16 12 N -0.68 -10.60 5.23 -14.24 -0.07 -10.67 16 13 C 0.20 3.80 6.42 -83.72 -0.54 3.26 16 14 C -0.21 -4.20 8.78 -39.34 -0.35 -4.55 16 15 C -0.06 -1.23 10.03 -39.63 -0.40 -1.63 16 16 C -0.20 -4.43 9.99 -39.36 -0.39 -4.82 16 17 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 18 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 19 C -0.39 -10.84 9.49 30.88 0.29 -10.54 16 20 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.26 -5.69 9.06 -39.21 -0.36 -6.04 16 28 H 0.21 2.01 7.80 -54.09 -0.42 1.58 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.67 5.71 -51.92 -0.30 0.37 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 4.98 6.43 -40.82 -0.26 4.72 16 36 H 0.14 2.70 5.63 -52.49 -0.30 2.41 16 37 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.69 5.65 -52.49 -0.30 2.40 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -34.50 337.98 -6.87 -41.37 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.36 Total: 9.14 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.41 Total: -8.93 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.16 Total: -43.19 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.33 Total: -18.67 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.50 -6.87 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491627581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.802 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds