Wall clock time and date at job start Tue Mar 31 2020 11:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09000 * 109.71461 * 240.74170 * 3 2 1 5 5 C 1.53299 * 109.68268 * 1.28019 * 3 2 1 6 6 O 1.42962 * 109.22281 * 172.02357 * 5 3 2 7 7 C 1.42960 * 114.16766 * 297.41843 * 6 5 3 8 8 C 1.52876 * 109.29782 * 62.44986 * 7 6 5 9 9 N 1.47153 * 109.68053 * 120.20484 * 3 2 1 10 10 C 1.34773 * 120.98232 * 9.72068 * 9 3 2 11 11 O 1.21588 * 120.00285 * 10.19368 * 10 9 3 12 12 N 1.34781 * 120.00301 * 190.19649 * 10 9 3 13 13 C 1.39939 * 120.00246 * 186.57555 * 12 10 9 14 14 C 1.38956 * 120.03289 * 331.74511 * 13 12 10 15 15 C 1.38166 * 120.06713 * 179.97438 * 14 13 12 16 16 C 1.38168 * 120.13574 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.07134 * 0.04965 * 16 15 14 18 18 O 1.35743 * 120.03371 * 180.02562 * 17 16 15 19 19 C 1.34836 * 117.00015 * 173.01908 * 18 17 16 20 20 H 1.07994 * 120.00209 * 5.15561 * 19 18 17 21 21 C 1.38650 * 119.99677 * 185.16399 * 19 18 17 22 22 N 1.31556 * 120.00437 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47115 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46926 * 119.99798 * 23 21 19 26 26 H 1.48494 * 109.47004 * 239.99618 * 23 21 19 27 27 C 1.38709 * 120.03692 * 151.72531 * 13 12 10 28 28 H 4.19120 * 14.97954 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.51347 * 291.94902 * 5 3 2 30 30 H 1.08996 * 109.51564 * 52.10193 * 5 3 2 31 31 H 1.09000 * 109.51692 * 182.50074 * 7 6 5 32 32 H 1.08998 * 109.51721 * 302.65599 * 7 6 5 33 33 H 1.09007 * 109.62257 * 188.11647 * 8 7 6 34 34 H 1.08999 * 109.52793 * 67.70291 * 8 7 6 35 35 H 0.97007 * 119.99552 * 6.57435 * 12 10 9 36 36 H 1.07996 * 119.96828 * 359.97438 * 14 13 12 37 37 H 1.08000 * 119.93415 * 180.02562 * 15 14 13 38 38 H 1.08000 * 119.96573 * 180.02562 * 16 15 14 39 39 H 0.97000 * 120.00039 * 180.02562 * 22 21 19 40 40 H 1.07999 * 120.06415 * 359.74519 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.5023 0.8952 5 6 3.1630 -1.4422 -0.0322 6 8 4.5803 -1.4303 -0.2194 7 6 5.0023 -0.8536 -1.4575 8 6 4.5787 0.6147 -1.5014 9 7 3.1413 0.6980 -1.1975 10 6 2.3023 1.3878 -1.9953 11 8 1.1591 1.5981 -1.6384 12 7 2.7303 1.8445 -3.1890 13 6 1.9068 2.6761 -3.9562 14 6 0.5250 2.5811 -3.8445 15 6 -0.2887 3.4022 -4.6013 16 6 0.2684 4.3203 -5.4707 17 6 1.6491 4.4197 -5.5872 18 8 2.1956 5.3223 -6.4412 19 6 3.5353 5.4693 -6.4015 20 1 4.1309 4.8247 -5.7721 21 6 4.1483 6.4481 -7.1686 22 7 3.4229 7.2331 -7.9356 23 14 6.0043 6.6522 -7.1131 24 1 6.5845 5.6529 -6.1804 25 1 6.5660 6.4447 -8.4721 26 1 6.3379 8.0208 -6.6433 27 6 2.4691 3.5963 -4.8286 28 1 -1.0499 0.0002 -0.0007 29 1 2.9243 -1.9356 0.9099 30 1 2.6917 -1.9795 -0.8551 31 1 6.0869 -0.9234 -1.5408 32 1 4.5377 -1.3887 -2.2856 33 1 4.7679 1.0207 -2.4951 34 1 5.1440 1.1793 -0.7599 35 1 3.6093 1.5968 -3.5162 36 1 0.0867 1.8648 -3.1655 37 1 -1.3624 3.3269 -4.5125 38 1 -0.3702 4.9610 -6.0606 39 1 3.8518 7.9177 -8.4726 40 1 3.5428 3.6751 -4.9138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491627581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:45 Heat of formation + Delta-G solvation = 0.076524 kcal Electronic energy + Delta-G solvation = -25901.092283 eV Core-core repulsion = 22070.228355 eV Total energy + Delta-G solvation = -3830.863929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15799 -40.77153 -39.73601 -38.16005 -36.09542 -36.04005 -34.37125 -34.07096 -31.57896 -30.97854 -30.28521 -28.67824 -27.27273 -25.63059 -24.18061 -23.51482 -22.76019 -21.31647 -20.50599 -19.63376 -19.07542 -18.40719 -17.68811 -17.21322 -17.14711 -16.80054 -16.47731 -16.18114 -16.05796 -15.81002 -15.66531 -15.63166 -15.35951 -14.90879 -14.57437 -14.18259 -13.98269 -13.56473 -13.38680 -13.18008 -12.99121 -12.72780 -12.55239 -12.45849 -12.08758 -12.01301 -11.98025 -11.38134 -11.36731 -11.29837 -11.20737 -10.74577 -10.15571 -9.72920 -9.30040 -8.82551 -8.45390 -6.14418 0.44495 0.72225 1.10835 1.36517 1.45401 1.54881 1.89657 1.98757 2.11065 2.18670 2.70835 2.76040 2.86170 3.17084 3.37589 3.51979 3.69549 3.87671 4.01147 4.04366 4.11956 4.20864 4.35388 4.45095 4.48946 4.64265 4.66366 4.70993 4.79205 4.84182 4.98324 5.05059 5.12467 5.19440 5.40476 5.46825 5.67985 5.70213 5.77958 5.99692 6.02899 6.22533 6.71009 6.82659 6.98986 7.33266 7.79024 8.77955 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003505 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.973063 B = 7986.665069 C = 9539.251708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.215 4.215 3 C 0.243 3.757 4 H 0.108 0.892 5 C 0.067 3.933 6 O -0.381 6.381 7 C 0.046 3.954 8 C 0.069 3.931 9 N -0.629 5.629 10 C 0.701 3.299 11 O -0.573 6.573 12 N -0.672 5.672 13 C 0.204 3.796 14 C -0.209 4.209 15 C -0.052 4.052 16 C -0.218 4.218 17 C 0.137 3.863 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.247 1.247 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.263 4.263 28 H 0.234 0.766 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.414 0.586 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -18.766 15.772 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.216 4.216 3 C 0.141 3.859 4 H 0.125 0.875 5 C -0.011 4.011 6 O -0.299 6.299 7 C -0.031 4.031 8 C -0.053 4.053 9 N -0.368 5.368 10 C 0.403 3.597 11 O -0.450 6.450 12 N -0.321 5.321 13 C 0.109 3.891 14 C -0.230 4.230 15 C -0.071 4.071 16 C -0.238 4.238 17 C 0.086 3.914 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.170 1.170 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.285 4.285 28 H 0.250 0.750 29 H 0.151 0.849 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.417 -18.416 15.926 24.586 hybrid contribution 0.584 0.723 -0.788 1.218 sum 4.000 -17.693 15.138 23.626 Atomic orbital electron populations 1.25336 0.96544 0.98601 0.97545 1.22343 0.94145 1.02245 1.02833 1.18694 0.84655 0.94904 0.87660 0.87459 1.22996 0.81316 0.92371 1.04419 1.88001 1.21443 1.81221 1.39251 1.23125 1.02896 0.90703 0.86426 1.22645 0.79007 0.99812 1.03871 1.47529 1.08487 1.54407 1.26398 1.16004 0.84592 0.78928 0.80154 1.90936 1.18504 1.61416 1.74166 1.42666 1.20642 1.50760 1.18021 1.17254 0.90286 0.90145 0.91451 1.21318 0.91636 1.05213 1.04804 1.20952 1.00443 0.92805 0.92851 1.20483 0.91640 1.05524 1.06128 1.19521 0.93348 0.89332 0.89198 1.83979 1.24406 1.52947 1.52057 1.21859 0.79407 1.19026 1.28574 0.87876 1.26603 1.06135 0.94286 0.95030 1.70196 1.38425 1.20238 1.27056 0.84530 0.73560 0.79042 0.79068 1.16967 1.19390 1.19715 1.20729 1.00390 1.01532 1.05873 0.74974 0.84939 0.92524 0.84317 0.92210 0.88067 0.88598 0.74608 0.83732 0.83129 0.86482 0.91878 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 17.93 74.32 1.33 -2.48 16 2 C -0.22 -5.22 10.06 31.12 0.31 -4.91 16 3 C 0.24 4.74 3.53 43.16 0.15 4.89 16 4 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 5 C 0.07 0.95 6.25 72.08 0.45 1.41 16 6 O -0.38 -5.50 10.74 -148.98 -1.60 -7.10 16 7 C 0.05 0.49 6.97 71.94 0.50 0.99 16 8 C 0.07 0.93 6.61 86.21 0.57 1.50 16 9 N -0.63 -13.47 3.03 -822.31 -2.49 -15.96 16 10 C 0.70 20.64 7.98 179.05 1.43 22.07 16 11 O -0.57 -20.27 9.74 -3.99 -0.04 -20.31 16 12 N -0.67 -19.70 5.23 -317.23 -1.66 -21.36 16 13 C 0.20 7.70 6.42 38.13 0.24 7.94 16 14 C -0.21 -7.88 8.78 22.42 0.20 -7.69 16 15 C -0.05 -1.93 10.03 22.24 0.22 -1.71 16 16 C -0.22 -9.60 9.99 22.41 0.22 -9.38 16 17 C 0.14 6.87 6.64 22.56 0.15 7.02 16 18 O -0.23 -13.58 9.76 -22.72 -0.22 -13.80 16 19 C -0.41 -23.50 9.49 67.92 0.64 -22.86 16 20 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -56.01 13.67 21.61 0.30 -55.72 16 23 Si 1.02 41.57 29.55 68.60 2.03 43.60 16 24 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 27 C -0.26 -11.42 9.06 22.51 0.20 -11.22 16 28 H 0.23 4.05 7.80 -4.42 -0.03 4.02 16 29 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.17 5.71 -2.38 -0.01 1.15 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 9.40 6.43 -92.70 -0.60 8.81 16 36 H 0.15 5.40 5.63 -2.91 -0.02 5.38 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.13 5.45 5.65 -2.91 -0.02 5.44 16 Total: -1.00 -77.63 337.98 3.91 -73.72 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.49 Total: 32.16 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 7.10 Total: -15.24 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -3.85 Total: -93.04 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.86 Total: -41.20 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -77.63 3.91 -73.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491627581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.798 kcal (2) G-P(sol) polarization free energy of solvation -77.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds