Wall clock time and date at job start Tue Mar 31 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47430 * 2 1 4 4 N 1.46501 * 109.47350 * 120.00431 * 2 1 3 5 5 C 1.46500 * 120.00295 * 122.28224 * 4 2 1 6 6 C 1.50706 * 109.47191 * 270.00362 * 5 4 2 7 7 H 1.07991 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00049 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00119 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99964 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47042 * 89.99955 * 10 8 6 12 12 H 1.48497 * 109.47416 * 209.99637 * 10 8 6 13 13 H 1.48502 * 109.47485 * 330.00072 * 10 8 6 14 14 C 1.34775 * 119.99948 * 302.28676 * 4 2 1 15 15 O 1.21557 * 119.99943 * 211.28832 * 14 4 2 16 16 C 1.47838 * 120.00071 * 31.28332 * 14 4 2 17 17 C 1.39556 * 120.56141 * 317.96741 * 16 14 4 18 18 N 1.31666 * 120.56637 * 180.02562 * 17 16 14 19 19 C 1.31957 * 121.88023 * 359.97438 * 18 17 16 20 20 C 1.38312 * 121.08132 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.34840 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.46981 * 359.97438 * 21 20 19 23 23 F 1.39893 * 109.47083 * 119.99729 * 21 20 19 24 24 F 1.39898 * 109.47043 * 239.99839 * 21 20 19 25 25 C 1.38402 * 119.29975 * 359.97438 * 20 19 18 26 26 H 1.09003 * 109.47297 * 253.66427 * 1 2 3 27 27 H 1.09004 * 109.47401 * 13.65986 * 1 2 3 28 28 H 1.08997 * 109.47365 * 133.65959 * 1 2 3 29 29 H 1.09002 * 109.46995 * 240.00349 * 2 1 3 30 30 H 1.09002 * 109.47591 * 222.93064 * 3 2 1 31 31 H 1.08999 * 109.47022 * 342.93555 * 3 2 1 32 32 H 1.09006 * 109.46544 * 102.93029 * 3 2 1 33 33 H 1.09004 * 109.46632 * 29.99751 * 5 4 2 34 34 H 1.08995 * 109.47585 * 150.00197 * 5 4 2 35 35 H 0.97004 * 119.99970 * 180.02562 * 9 8 6 36 36 H 1.07997 * 119.72080 * 0.04049 * 17 16 14 37 37 H 1.08003 * 119.45948 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.84830 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.9014 -1.8520 1.0622 6 6 2.0717 -3.1076 0.9835 7 1 0.9944 -3.0466 1.0283 8 6 2.6879 -4.3340 0.8533 9 7 1.9639 -5.4298 0.7852 10 14 4.5513 -4.4394 0.7751 11 1 5.0966 -4.5894 2.1483 12 1 4.9468 -5.6123 -0.0453 13 1 5.0919 -3.2004 0.1605 14 6 1.6552 -0.2578 2.4197 15 8 2.4134 -0.3892 3.3607 16 6 0.3347 0.3769 2.6175 17 6 -0.1594 1.2917 1.6866 18 7 -1.3352 1.8574 1.8629 19 6 -2.0880 1.5878 2.9126 20 6 -1.6696 0.6924 3.8802 21 6 -2.5424 0.3971 5.0727 22 9 -3.7218 1.1444 4.9839 23 9 -2.8545 -0.9664 5.0961 24 9 -1.8611 0.7397 6.2455 25 6 -0.4410 0.0704 3.7416 26 1 -0.3634 -0.2890 0.9862 27 1 -0.3634 0.9986 -0.2427 28 1 -0.3634 -0.7094 -0.7434 29 1 1.8933 -0.5138 -0.8900 30 1 2.8705 1.5342 -0.6999 31 1 1.2349 2.1125 -0.3016 32 1 2.3779 1.7083 1.0017 33 1 3.4970 -1.7526 0.1548 34 1 3.5628 -1.9071 1.9268 35 1 2.3975 -6.2927 0.6939 36 1 0.4274 1.5375 0.8140 37 1 -3.0465 2.0743 3.0179 38 1 -0.0895 -0.6327 4.4824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554776338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:40 Heat of formation + Delta-G solvation = -62.970996 kcal Electronic energy + Delta-G solvation = -27393.702111 eV Core-core repulsion = 23018.247496 eV Total energy + Delta-G solvation = -4375.454615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.26609 -47.80690 -47.69398 -41.70134 -38.94687 -36.84973 -33.81596 -33.11904 -32.16880 -31.27110 -28.03750 -27.43822 -26.29849 -24.86694 -23.19074 -22.29841 -21.93620 -19.42569 -18.62508 -18.57810 -17.97543 -17.34987 -17.03082 -16.67817 -16.20651 -15.47555 -14.89179 -14.78923 -14.52061 -14.48469 -14.41047 -14.19550 -14.16109 -13.92494 -13.87004 -13.52322 -13.27623 -12.79134 -12.73779 -12.52142 -12.31351 -12.16657 -11.96458 -11.61315 -11.35812 -10.98159 -10.79995 -10.59423 -10.29116 -10.16568 -10.03778 -9.65991 -9.37047 -8.85099 -8.71078 -7.87385 -6.20908 -4.22298 0.46356 0.86537 2.47535 2.81503 3.20885 3.26337 3.29339 3.33391 3.55280 3.57645 3.88737 4.09375 4.28971 4.30342 4.51873 4.57379 4.61761 4.75457 4.92218 5.08341 5.10590 5.14507 5.31345 5.47746 5.53373 5.63189 5.68846 5.79052 5.97117 6.06018 6.18148 6.28987 6.56951 6.78439 7.18273 7.45086 7.51171 7.96374 8.30596 8.50693 8.81733 9.38232 10.91749 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004477 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.199627 B = 6252.293811 C = 7162.675939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.133 3.867 3 C -0.188 4.188 4 N -0.599 5.599 5 C 0.218 3.782 6 C -0.542 4.542 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.579 3.421 15 O -0.521 6.521 16 C -0.200 4.200 17 C 0.157 3.843 18 N -0.506 5.506 19 C 0.170 3.830 20 C -0.267 4.267 21 C 0.520 3.480 22 F -0.177 7.177 23 F -0.172 7.172 24 F -0.175 7.175 25 C 0.028 3.972 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.214 0.786 37 H 0.170 0.830 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 15.581 1.041 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.028 3.972 3 C -0.245 4.245 4 N -0.331 5.331 5 C 0.099 3.901 6 C -0.580 4.580 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.530 5.530 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.365 3.635 15 O -0.397 6.397 16 C -0.205 4.205 17 C 0.002 3.998 18 N -0.215 5.215 19 C 0.013 3.987 20 C -0.271 4.271 21 C 0.465 3.535 22 F -0.159 7.159 23 F -0.154 7.154 24 F -0.156 7.156 25 C 0.002 3.998 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.229 0.771 37 H 0.187 0.813 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.978 15.857 0.937 17.350 hybrid contribution 0.854 -1.196 0.770 1.659 sum -6.124 14.660 1.707 15.979 Atomic orbital electron populations 1.23746 0.96246 1.02592 1.04065 1.21117 0.93417 0.92499 0.90181 1.22785 1.02241 0.95911 1.03594 1.47735 1.50414 1.31630 1.03323 1.19786 0.89905 0.82660 0.97790 1.21371 0.95384 0.89275 1.51969 0.90598 1.24842 0.98265 0.95438 0.94203 1.69888 1.35706 0.98116 1.49297 0.86866 0.85934 0.78156 0.78881 1.19809 1.20945 1.18899 1.17643 0.84665 0.77632 0.83555 1.90740 1.52091 1.54881 1.42025 1.21298 0.98840 1.02955 0.97445 1.25292 0.92395 0.86603 0.95532 1.68059 1.06010 1.25926 1.21520 1.22824 0.98381 0.90258 0.87195 1.20796 0.98793 1.07988 0.99489 1.17969 0.78272 0.74506 0.82744 1.93155 1.49712 1.76715 1.96269 1.93252 1.93321 1.32103 1.96686 1.93230 1.79638 1.92006 1.50756 1.21301 0.90119 0.93495 0.94845 0.89570 0.90063 0.90840 0.87593 0.90637 0.90635 0.91500 0.94782 0.94182 0.92370 0.77100 0.81274 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 7.73 37.15 0.29 -2.50 16 2 C 0.13 1.90 3.27 -67.93 -0.22 1.67 16 3 C -0.19 -2.01 8.35 37.16 0.31 -1.70 16 4 N -0.60 -11.46 2.38 -168.58 -0.40 -11.86 16 5 C 0.22 5.00 4.38 -5.19 -0.02 4.97 16 6 C -0.54 -14.62 9.94 -34.44 -0.34 -14.96 16 7 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 10 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 14 C 0.58 11.32 5.93 -12.33 -0.07 11.25 16 15 O -0.52 -11.89 16.78 5.32 0.09 -11.80 16 16 C -0.20 -3.22 4.24 -104.83 -0.44 -3.67 16 17 C 0.16 2.09 5.87 -17.13 -0.10 1.99 16 18 N -0.51 -6.37 10.32 -17.56 -0.18 -6.55 16 19 C 0.17 1.99 10.59 -17.47 -0.18 1.81 16 20 C -0.27 -3.48 5.38 -104.53 -0.56 -4.04 16 21 C 0.52 6.42 3.33 36.01 0.12 6.54 16 22 F -0.18 -1.95 15.99 2.25 0.04 -1.91 16 23 F -0.17 -2.35 17.24 2.25 0.04 -2.31 16 24 F -0.17 -2.25 17.24 2.25 0.04 -2.21 16 25 C 0.03 0.43 9.41 -38.87 -0.37 0.06 16 26 H 0.09 1.35 3.95 -62.21 -0.25 1.10 16 27 H 0.08 0.86 5.39 -51.93 -0.28 0.58 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 1.49 7.81 -51.93 -0.41 1.09 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.61 6.21 -51.93 -0.32 0.29 16 32 H 0.07 0.80 6.82 -51.93 -0.35 0.45 16 33 H 0.03 0.74 7.00 -51.93 -0.36 0.37 16 34 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.21 2.44 1.08 -53.56 -0.06 2.38 16 37 H 0.17 1.49 7.15 -52.48 -0.38 1.12 16 38 H 0.15 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -31.42 318.91 -4.78 -36.20 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.61 Total: 1.94 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.70 Total: 3.43 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.19 Total: -44.07 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.42 -4.78 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554776338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.770 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds