Wall clock time and date at job start Tue Mar 31 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47430 * 2 1 4 4 N 1.46501 * 109.47350 * 120.00431 * 2 1 3 5 5 C 1.46500 * 120.00295 * 122.28224 * 4 2 1 6 6 C 1.50706 * 109.47191 * 270.00362 * 5 4 2 7 7 H 1.07991 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00049 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00119 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99964 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47042 * 89.99955 * 10 8 6 12 12 H 1.48497 * 109.47416 * 209.99637 * 10 8 6 13 13 H 1.48502 * 109.47485 * 330.00072 * 10 8 6 14 14 C 1.34775 * 119.99948 * 302.28676 * 4 2 1 15 15 O 1.21557 * 119.99943 * 211.28832 * 14 4 2 16 16 C 1.47838 * 120.00071 * 31.28332 * 14 4 2 17 17 C 1.39556 * 120.56141 * 317.96741 * 16 14 4 18 18 N 1.31666 * 120.56637 * 180.02562 * 17 16 14 19 19 C 1.31957 * 121.88023 * 359.97438 * 18 17 16 20 20 C 1.38312 * 121.08132 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.34840 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.46981 * 359.97438 * 21 20 19 23 23 F 1.39893 * 109.47083 * 119.99729 * 21 20 19 24 24 F 1.39898 * 109.47043 * 239.99839 * 21 20 19 25 25 C 1.38402 * 119.29975 * 359.97438 * 20 19 18 26 26 H 1.09003 * 109.47297 * 253.66427 * 1 2 3 27 27 H 1.09004 * 109.47401 * 13.65986 * 1 2 3 28 28 H 1.08997 * 109.47365 * 133.65959 * 1 2 3 29 29 H 1.09002 * 109.46995 * 240.00349 * 2 1 3 30 30 H 1.09002 * 109.47591 * 222.93064 * 3 2 1 31 31 H 1.08999 * 109.47022 * 342.93555 * 3 2 1 32 32 H 1.09006 * 109.46544 * 102.93029 * 3 2 1 33 33 H 1.09004 * 109.46632 * 29.99751 * 5 4 2 34 34 H 1.08995 * 109.47585 * 150.00197 * 5 4 2 35 35 H 0.97004 * 119.99970 * 180.02562 * 9 8 6 36 36 H 1.07997 * 119.72080 * 0.04049 * 17 16 14 37 37 H 1.08003 * 119.45948 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.84830 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.9014 -1.8520 1.0622 6 6 2.0717 -3.1076 0.9835 7 1 0.9944 -3.0466 1.0283 8 6 2.6879 -4.3340 0.8533 9 7 1.9639 -5.4298 0.7852 10 14 4.5513 -4.4394 0.7751 11 1 5.0966 -4.5894 2.1483 12 1 4.9468 -5.6123 -0.0453 13 1 5.0919 -3.2004 0.1605 14 6 1.6552 -0.2578 2.4197 15 8 2.4134 -0.3892 3.3607 16 6 0.3347 0.3769 2.6175 17 6 -0.1594 1.2917 1.6866 18 7 -1.3352 1.8574 1.8629 19 6 -2.0880 1.5878 2.9126 20 6 -1.6696 0.6924 3.8802 21 6 -2.5424 0.3971 5.0727 22 9 -3.7218 1.1444 4.9839 23 9 -2.8545 -0.9664 5.0961 24 9 -1.8611 0.7397 6.2455 25 6 -0.4410 0.0704 3.7416 26 1 -0.3634 -0.2890 0.9862 27 1 -0.3634 0.9986 -0.2427 28 1 -0.3634 -0.7094 -0.7434 29 1 1.8933 -0.5138 -0.8900 30 1 2.8705 1.5342 -0.6999 31 1 1.2349 2.1125 -0.3016 32 1 2.3779 1.7083 1.0017 33 1 3.4970 -1.7526 0.1548 34 1 3.5628 -1.9071 1.9268 35 1 2.3975 -6.2927 0.6939 36 1 0.4274 1.5375 0.8140 37 1 -3.0465 2.0743 3.0179 38 1 -0.0895 -0.6327 4.4824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554776338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:39 Heat of formation + Delta-G solvation = -83.536738 kcal Electronic energy + Delta-G solvation = -27394.593908 eV Core-core repulsion = 23018.247496 eV Total energy + Delta-G solvation = -4376.346412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.27925 -48.78443 -48.74652 -42.89122 -40.28123 -38.21207 -35.51245 -34.39742 -33.79110 -32.51942 -29.85234 -28.43643 -27.33990 -26.23689 -24.41805 -23.80482 -23.29733 -20.67435 -19.64891 -19.60396 -19.19744 -19.07846 -18.41059 -17.95115 -17.48705 -16.99545 -16.25860 -16.10247 -15.91187 -15.58846 -15.57364 -15.41278 -15.17035 -14.95358 -14.89271 -14.83721 -14.59886 -14.36537 -14.00036 -13.94442 -13.55939 -13.36102 -13.28959 -13.11636 -12.75504 -12.44654 -12.33638 -12.00008 -11.76736 -11.73275 -11.36748 -11.30016 -10.85377 -10.69117 -9.98156 -9.44912 -8.36153 -6.42830 -0.61397 -0.29353 1.30215 1.33824 1.37134 1.45319 1.52864 2.01570 2.29341 2.34973 2.52552 2.84312 2.98215 3.06965 3.27556 3.39839 3.44517 3.49493 3.73285 3.86342 4.00340 4.06643 4.22768 4.46284 4.52765 4.58208 4.63159 4.75922 4.79355 4.88719 4.92955 5.06338 5.15627 5.29177 5.41434 5.58958 6.20318 6.44328 6.49570 6.60210 6.95469 7.23462 8.79919 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004477 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.199627 B = 6252.293811 C = 7162.675939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.121 3.879 3 C -0.182 4.182 4 N -0.604 5.604 5 C 0.226 3.774 6 C -0.543 4.543 7 H 0.034 0.966 8 C 0.017 3.983 9 N -0.941 5.941 10 Si 0.943 3.057 11 H -0.277 1.277 12 H -0.277 1.277 13 H -0.235 1.235 14 C 0.574 3.426 15 O -0.568 6.568 16 C -0.223 4.223 17 C 0.174 3.826 18 N -0.501 5.501 19 C 0.185 3.815 20 C -0.269 4.269 21 C 0.527 3.473 22 F -0.164 7.164 23 F -0.182 7.182 24 F -0.178 7.178 25 C 0.014 3.986 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.233 0.767 37 H 0.207 0.793 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 18.231 -0.426 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.018 3.982 3 C -0.239 4.239 4 N -0.336 5.336 5 C 0.105 3.895 6 C -0.581 4.581 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.765 3.235 11 H -0.203 1.203 12 H -0.202 1.202 13 H -0.158 1.158 14 C 0.363 3.637 15 O -0.448 6.448 16 C -0.228 4.228 17 C 0.019 3.981 18 N -0.210 5.210 19 C 0.029 3.971 20 C -0.273 4.273 21 C 0.472 3.528 22 F -0.145 7.145 23 F -0.164 7.164 24 F -0.160 7.160 25 C -0.011 4.011 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.248 0.752 37 H 0.223 0.777 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.154 18.550 -0.565 19.890 hybrid contribution 0.749 -2.012 1.247 2.483 sum -6.405 16.538 0.682 17.748 Atomic orbital electron populations 1.23728 0.95567 1.04487 1.02559 1.21517 0.94130 0.94392 0.88157 1.22743 1.04134 0.93493 1.03548 1.47786 1.50081 1.30754 1.04969 1.19464 0.89790 0.82496 0.97785 1.21583 0.93929 0.91420 1.51185 0.94765 1.25772 1.03697 0.94910 0.93788 1.70037 1.38082 0.98883 1.51065 0.85790 0.79364 0.79510 0.78796 1.20308 1.20209 1.15834 1.18167 0.85483 0.77081 0.82994 1.90695 1.53597 1.57156 1.43314 1.21039 0.97645 1.04916 0.99182 1.25527 0.92603 0.85061 0.94915 1.68205 1.05534 1.25570 1.21663 1.23418 0.99084 0.88732 0.85855 1.20818 0.97929 1.08215 1.00290 1.17814 0.78484 0.74168 0.82363 1.93180 1.48869 1.76264 1.96187 1.93237 1.93395 1.33026 1.96703 1.93226 1.79822 1.91976 1.50957 1.21292 0.91381 0.93862 0.94611 0.91847 0.86436 0.91376 0.87403 0.88702 0.87073 0.92778 0.92551 0.95960 0.92213 0.75249 0.77675 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.14 7.73 71.98 0.56 -4.58 16 2 C 0.12 3.26 3.27 44.99 0.15 3.41 16 3 C -0.18 -3.30 8.35 71.98 0.60 -2.70 16 4 N -0.60 -23.26 2.38 -805.54 -1.92 -25.17 16 5 C 0.23 10.42 4.38 85.63 0.38 10.80 16 6 C -0.54 -30.26 9.94 25.60 0.25 -30.01 16 7 H 0.03 2.13 8.06 -2.92 -0.02 2.11 16 8 C 0.02 0.97 5.47 84.65 0.46 1.44 16 9 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 10 Si 0.94 42.63 27.47 68.60 1.88 44.51 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 14 C 0.57 23.09 5.93 86.78 0.51 23.61 16 15 O -0.57 -27.13 16.78 -3.90 -0.07 -27.19 16 16 C -0.22 -7.20 4.24 -20.00 -0.08 -7.28 16 17 C 0.17 4.25 5.87 85.04 0.50 4.75 16 18 N -0.50 -10.97 10.32 -209.47 -2.16 -13.13 16 19 C 0.19 3.79 10.59 84.69 0.90 4.69 16 20 C -0.27 -6.72 5.38 -19.81 -0.11 -6.83 16 21 C 0.53 12.47 3.33 71.24 0.24 12.70 16 22 F -0.16 -3.21 15.99 44.97 0.72 -2.49 16 23 F -0.18 -4.95 17.24 44.97 0.78 -4.18 16 24 F -0.18 -4.49 17.24 44.97 0.78 -3.72 16 25 C 0.01 0.45 9.41 22.73 0.21 0.66 16 26 H 0.06 1.95 3.95 -12.04 -0.05 1.90 16 27 H 0.12 2.02 5.39 -2.38 -0.01 2.01 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 2.85 7.81 -2.39 -0.02 2.83 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.23 6.21 -2.39 -0.01 1.22 16 32 H 0.05 1.17 6.82 -2.38 -0.02 1.16 16 33 H 0.06 2.35 7.00 -2.39 -0.02 2.33 16 34 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.23 4.57 1.08 -3.92 0.00 4.56 16 37 H 0.21 2.70 7.15 -2.91 -0.02 2.68 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -72.00 318.91 5.92 -66.08 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.04 Total: 11.90 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 4.57 Total: 10.65 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.78 Total: -95.57 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.07 Total: -27.19 kcal Atomic # 9 Polarization: -12.65 SS G_CDS: 2.27 Total: -10.38 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Total: -72.00 5.92 -66.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554776338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.456 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds