Wall clock time and date at job start Tue Mar 31 2020 11:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46805 * 2 1 4 4 H 1.09002 * 109.47323 * 305.00102 * 3 2 1 5 5 C 1.50704 * 109.46740 * 185.00395 * 3 2 1 6 6 H 1.08005 * 119.99619 * 240.00028 * 5 3 2 7 7 C 1.37876 * 120.00420 * 59.99863 * 5 3 2 8 8 N 1.31513 * 119.99777 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00264 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47237 * 59.99968 * 9 7 5 11 11 H 1.48498 * 109.47292 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46963 * 300.00187 * 9 7 5 13 13 N 1.46497 * 109.47393 * 65.00234 * 3 2 1 14 14 C 1.34769 * 120.00166 * 274.99955 * 13 3 2 15 15 O 1.21359 * 119.99973 * 359.97438 * 14 13 3 16 16 C 1.49343 * 120.00206 * 180.02562 * 14 13 3 17 17 O 1.21382 * 119.99966 * 359.97438 * 16 14 13 18 18 N 1.34783 * 120.00220 * 179.97438 * 16 14 13 19 19 C 1.39880 * 119.99818 * 184.60742 * 18 16 14 20 20 C 1.39396 * 119.94346 * 144.88502 * 19 18 16 21 21 C 1.37704 * 120.61916 * 180.02562 * 20 19 18 22 22 C 1.38974 * 120.06300 * 359.96436 * 21 20 19 23 23 O 1.34912 * 133.30879 * 180.02562 * 22 21 20 24 24 C 1.34439 * 110.89287 * 179.97438 * 23 22 21 25 25 C 1.33990 * 110.16194 * 359.97438 * 24 23 22 26 26 C 1.40478 * 119.44786 * 0.02562 * 22 21 20 27 27 C 1.38387 * 119.94811 * 324.89859 * 19 18 16 28 28 H 1.08994 * 109.47057 * 59.99516 * 1 2 3 29 29 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46798 * 300.00017 * 1 2 3 31 31 H 1.08996 * 109.46739 * 240.00052 * 2 1 3 32 32 H 1.08991 * 109.47126 * 119.99727 * 2 1 3 33 33 H 0.96997 * 120.00449 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99852 * 94.99919 * 13 3 2 35 35 H 0.97005 * 119.99469 * 4.60486 * 18 16 14 36 36 H 1.07995 * 119.69007 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96774 * 179.97438 * 21 20 19 38 38 H 1.07996 * 124.91823 * 179.97438 * 24 23 22 39 39 H 1.08000 * 126.90823 * 179.97438 * 25 24 23 40 40 H 1.08003 * 120.23013 * 359.96597 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3375 -2.1734 9 14 6.0050 0.8800 -1.3813 10 1 6.5967 0.1453 -0.2345 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2799 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6326 0.4336 16 6 0.0404 3.3326 2.6429 17 8 0.8157 3.3647 3.5763 18 7 -1.1768 3.8999 2.7580 19 6 -1.5112 4.6089 3.9165 20 6 -2.3265 5.7364 3.8313 21 6 -2.6640 6.4449 4.9628 22 6 -2.1923 6.0386 6.2052 23 8 -2.3495 6.5176 7.4566 24 6 -1.6820 5.7624 8.3464 25 6 -1.0580 4.7550 7.7210 26 6 -1.3707 4.9026 6.2943 27 6 -1.0320 4.1900 5.1453 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0610 -2.9500 34 1 2.2720 2.1232 1.9977 35 1 -1.8207 3.8166 2.0373 36 1 -2.6969 6.0571 2.8689 37 1 -3.2960 7.3172 4.8845 38 1 -1.6530 5.9418 9.4109 39 1 -0.4465 3.9893 8.1751 40 1 -0.4005 3.3165 5.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599968021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:48 Heat of formation + Delta-G solvation = -35.728227 kcal Electronic energy + Delta-G solvation = -25376.770867 eV Core-core repulsion = 21544.354328 eV Total energy + Delta-G solvation = -3832.416539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57867 -40.68054 -38.80904 -37.51567 -35.45964 -34.43810 -32.96426 -32.43425 -31.02831 -29.78931 -29.30669 -27.29663 -25.01739 -23.56533 -22.89181 -21.98624 -21.52773 -20.35303 -19.52795 -18.79447 -17.83292 -17.46181 -16.67820 -16.35969 -16.21504 -15.68885 -15.62230 -15.09654 -14.51286 -14.32322 -14.29627 -13.82900 -13.44493 -13.32300 -13.00773 -12.87318 -12.76844 -12.56383 -12.11681 -11.63465 -11.56225 -11.33595 -11.13778 -10.97695 -10.87041 -10.42365 -10.38288 -10.30223 -10.27776 -9.73016 -9.17713 -9.09465 -8.58771 -8.47972 -8.14885 -8.05590 -6.19515 -4.29432 0.72362 0.99156 1.84155 2.17831 2.54648 2.68104 3.23897 3.28862 3.31091 3.45770 3.70380 4.00571 4.27616 4.35183 4.49350 4.80244 4.98805 5.04731 5.05377 5.11808 5.13158 5.39747 5.63176 5.74293 6.00141 6.07137 6.09721 6.21707 6.28654 6.33354 6.52243 6.54658 6.91217 6.94036 6.99017 7.10377 7.15305 7.24286 7.46549 7.60671 7.75043 7.87473 8.05535 8.40610 8.58703 8.82837 9.37454 10.85855 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.002656 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.462755 B =10538.776853 C =11067.216389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.506 6.506 18 N -0.649 5.649 19 C 0.129 3.871 20 C -0.109 4.109 21 C -0.089 4.089 22 C 0.035 3.965 23 O -0.197 6.197 24 C 0.005 3.995 25 C -0.207 4.207 26 C -0.115 4.115 27 C -0.073 4.073 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.424 0.576 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.207 0.793 39 H 0.159 0.841 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 8.901 15.928 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.407 6.407 16 C 0.289 3.711 17 O -0.380 6.380 18 N -0.296 5.296 19 C 0.035 3.965 20 C -0.129 4.129 21 C -0.108 4.108 22 C -0.012 4.012 23 O -0.099 6.099 24 C -0.060 4.060 25 C -0.226 4.226 26 C -0.117 4.117 27 C -0.093 4.093 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.262 0.738 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.224 0.776 39 H 0.176 0.824 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.843 8.976 15.694 21.613 hybrid contribution 1.120 -0.205 0.013 1.139 sum -10.722 8.771 15.707 20.943 Atomic orbital electron populations 1.21858 0.98297 0.98450 1.01022 1.21967 0.92652 0.99374 1.02802 1.19021 0.94786 0.89395 0.80071 0.92708 1.21171 0.90305 1.39567 1.06608 0.91815 1.24867 0.98844 0.94570 0.95215 1.69867 1.35387 1.37331 1.09333 0.86462 0.84491 0.78435 0.77501 1.20041 1.21078 1.20092 1.46467 1.13398 1.52418 1.19256 1.19548 0.84583 0.81495 0.87005 1.90745 1.51190 1.59423 1.39384 1.21051 0.81412 0.78975 0.89619 1.90726 1.51066 1.56212 1.39984 1.43178 1.15953 1.51923 1.18580 1.17506 0.99699 0.93303 0.85980 1.20717 1.00138 0.93504 0.98590 1.19625 1.02550 1.01515 0.87133 1.19635 1.00859 0.95628 0.85088 1.84007 1.61726 1.49583 1.14566 1.23936 0.95385 0.91741 0.94957 1.22545 1.06060 1.02407 0.91562 1.19800 1.00686 0.97124 0.94044 1.20655 0.99830 1.00215 0.88649 0.92910 0.95445 0.94647 0.87822 0.94642 0.92357 0.76380 0.73765 0.84027 0.84534 0.77601 0.82385 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.35 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.67 -13.83 5.01 -55.40 -0.28 -14.10 16 14 C 0.50 9.50 6.45 -11.64 -0.08 9.42 16 15 O -0.53 -10.92 13.62 5.49 0.07 -10.85 16 16 C 0.51 8.39 7.73 -11.63 -0.09 8.30 16 17 O -0.51 -9.08 13.91 5.47 0.08 -9.00 16 18 N -0.65 -8.72 5.32 -10.28 -0.05 -8.78 16 19 C 0.13 1.66 6.30 -83.70 -0.53 1.13 16 20 C -0.11 -1.12 9.93 -39.35 -0.39 -1.52 16 21 C -0.09 -0.90 10.05 -39.50 -0.40 -1.29 16 22 C 0.04 0.42 7.41 -38.47 -0.29 0.13 16 23 O -0.20 -2.13 10.58 3.64 0.04 -2.09 16 24 C 0.00 0.04 11.96 29.24 0.35 0.39 16 25 C -0.21 -2.08 11.14 -37.61 -0.42 -2.50 16 26 C -0.12 -1.46 6.39 -105.16 -0.67 -2.13 16 27 C -0.07 -1.01 8.74 -39.10 -0.34 -1.35 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 31 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.40 7.85 8.01 -40.82 -0.33 7.52 16 35 H 0.42 4.93 8.30 -40.82 -0.34 4.59 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.15 2.18 6.22 -52.48 -0.33 1.85 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -30.16 341.03 -7.10 -37.26 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.47 Total: 11.79 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.23 Total: -1.33 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.29 Total: -46.19 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.19 Total: -21.95 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.16 -7.10 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.528 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds