Wall clock time and date at job start Tue Mar 31 2020 11:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46805 * 2 1 4 4 H 1.09002 * 109.47323 * 305.00102 * 3 2 1 5 5 C 1.50704 * 109.46740 * 185.00395 * 3 2 1 6 6 H 1.08005 * 119.99619 * 240.00028 * 5 3 2 7 7 C 1.37876 * 120.00420 * 59.99863 * 5 3 2 8 8 N 1.31513 * 119.99777 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00264 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47237 * 59.99968 * 9 7 5 11 11 H 1.48498 * 109.47292 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46963 * 300.00187 * 9 7 5 13 13 N 1.46497 * 109.47393 * 65.00234 * 3 2 1 14 14 C 1.34769 * 120.00166 * 274.99955 * 13 3 2 15 15 O 1.21359 * 119.99973 * 359.97438 * 14 13 3 16 16 C 1.49343 * 120.00206 * 180.02562 * 14 13 3 17 17 O 1.21382 * 119.99966 * 359.97438 * 16 14 13 18 18 N 1.34783 * 120.00220 * 179.97438 * 16 14 13 19 19 C 1.39880 * 119.99818 * 184.60742 * 18 16 14 20 20 C 1.39396 * 119.94346 * 144.88502 * 19 18 16 21 21 C 1.37704 * 120.61916 * 180.02562 * 20 19 18 22 22 C 1.38974 * 120.06300 * 359.96436 * 21 20 19 23 23 O 1.34912 * 133.30879 * 180.02562 * 22 21 20 24 24 C 1.34439 * 110.89287 * 179.97438 * 23 22 21 25 25 C 1.33990 * 110.16194 * 359.97438 * 24 23 22 26 26 C 1.40478 * 119.44786 * 0.02562 * 22 21 20 27 27 C 1.38387 * 119.94811 * 324.89859 * 19 18 16 28 28 H 1.08994 * 109.47057 * 59.99516 * 1 2 3 29 29 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46798 * 300.00017 * 1 2 3 31 31 H 1.08996 * 109.46739 * 240.00052 * 2 1 3 32 32 H 1.08991 * 109.47126 * 119.99727 * 2 1 3 33 33 H 0.96997 * 120.00449 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99852 * 94.99919 * 13 3 2 35 35 H 0.97005 * 119.99469 * 4.60486 * 18 16 14 36 36 H 1.07995 * 119.69007 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96774 * 179.97438 * 21 20 19 38 38 H 1.07996 * 124.91823 * 179.97438 * 24 23 22 39 39 H 1.08000 * 126.90823 * 179.97438 * 25 24 23 40 40 H 1.08003 * 120.23013 * 359.96597 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3375 -2.1734 9 14 6.0050 0.8800 -1.3813 10 1 6.5967 0.1453 -0.2345 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2799 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6326 0.4336 16 6 0.0404 3.3326 2.6429 17 8 0.8157 3.3647 3.5763 18 7 -1.1768 3.8999 2.7580 19 6 -1.5112 4.6089 3.9165 20 6 -2.3265 5.7364 3.8313 21 6 -2.6640 6.4449 4.9628 22 6 -2.1923 6.0386 6.2052 23 8 -2.3495 6.5176 7.4566 24 6 -1.6820 5.7624 8.3464 25 6 -1.0580 4.7550 7.7210 26 6 -1.3707 4.9026 6.2943 27 6 -1.0320 4.1900 5.1453 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0610 -2.9500 34 1 2.2720 2.1232 1.9977 35 1 -1.8207 3.8166 2.0373 36 1 -2.6969 6.0571 2.8689 37 1 -3.2960 7.3172 4.8845 38 1 -1.6530 5.9418 9.4109 39 1 -0.4465 3.9893 8.1751 40 1 -0.4005 3.3165 5.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599968021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:47 Heat of formation + Delta-G solvation = -55.628012 kcal Electronic energy + Delta-G solvation = -25377.633786 eV Core-core repulsion = 21544.354328 eV Total energy + Delta-G solvation = -3833.279459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.37878 -42.01438 -40.22819 -38.64546 -37.19293 -35.64531 -34.31402 -33.74338 -32.82868 -30.70942 -30.19351 -29.15497 -26.43279 -24.99056 -24.17707 -23.06081 -22.32267 -21.86189 -21.22643 -20.16963 -18.89585 -18.52469 -18.00757 -17.69658 -17.19811 -17.13131 -17.00229 -16.71541 -15.97633 -15.66531 -15.40196 -15.02225 -14.87010 -14.61752 -14.10401 -13.94916 -13.85358 -13.63120 -13.54721 -13.43105 -13.20370 -12.99669 -12.76051 -12.66577 -12.23195 -12.11860 -12.08719 -11.60655 -11.36807 -11.18815 -11.12158 -10.63402 -10.53125 -9.85357 -9.27534 -9.10415 -8.19146 -6.36246 -0.11244 -0.04606 0.55087 1.29618 1.44248 1.46092 1.46559 1.54785 1.87767 2.13749 2.38942 2.63964 2.73077 3.10692 3.43373 3.59327 3.71270 4.00414 4.21915 4.24708 4.35878 4.48447 4.54701 4.60049 4.70981 4.79534 4.94502 5.01437 5.12404 5.15198 5.22393 5.22807 5.35295 5.38687 5.45047 5.55153 5.58595 5.68460 5.78686 5.99064 6.10848 6.15063 6.54414 6.65969 6.78296 7.09101 7.35666 8.85837 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.002656 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.462755 B =10538.776853 C =11067.216389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.544 6.544 16 C 0.514 3.486 17 O -0.523 6.523 18 N -0.630 5.630 19 C 0.112 3.888 20 C -0.105 4.105 21 C -0.081 4.081 22 C 0.020 3.980 23 O -0.202 6.202 24 C 0.025 3.975 25 C -0.236 4.236 26 C -0.137 4.137 27 C -0.096 4.096 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.267 0.733 34 H 0.408 0.592 35 H 0.433 0.567 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.255 0.745 39 H 0.171 0.829 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 10.290 17.642 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.398 6.398 18 N -0.278 5.278 19 C 0.018 3.982 20 C -0.125 4.125 21 C -0.099 4.099 22 C -0.027 4.027 23 O -0.104 6.104 24 C -0.039 4.039 25 C -0.255 4.255 26 C -0.139 4.139 27 C -0.116 4.116 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.273 0.727 36 H 0.189 0.811 37 H 0.187 0.813 38 H 0.270 0.730 39 H 0.188 0.812 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.616 10.387 17.430 23.893 hybrid contribution 1.251 -0.564 -0.420 1.435 sum -11.366 9.823 17.011 22.695 Atomic orbital electron populations 1.21712 0.96492 0.99721 1.00460 1.21822 0.94215 0.98525 1.01685 1.18640 0.94038 0.89595 0.80287 0.96598 1.21497 0.91289 1.39648 1.06934 0.91464 1.25668 1.03146 0.94154 0.94870 1.69996 1.37076 1.37886 1.09748 0.85462 0.79248 0.78439 0.77604 1.19232 1.20806 1.19801 1.46241 1.14382 1.53031 1.18377 1.19930 0.83736 0.80783 0.87851 1.90732 1.51471 1.59742 1.40343 1.20381 0.82415 0.79410 0.88151 1.90732 1.51893 1.57186 1.39987 1.42991 1.14779 1.50868 1.19157 1.17725 1.00936 0.94419 0.85108 1.21006 0.99029 0.92269 1.00162 1.20045 1.01757 1.01913 0.86224 1.19982 1.01034 0.95586 0.86119 1.84027 1.61969 1.49944 1.14452 1.24822 0.92801 0.89944 0.96299 1.22844 1.07792 1.04105 0.90711 1.20128 1.01214 0.97600 0.94955 1.20589 1.00787 1.00411 0.89855 0.94436 0.93224 0.94107 0.90278 0.94219 0.92329 0.75691 0.72692 0.81071 0.81313 0.72962 0.81170 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.52 71.98 0.61 -4.72 16 2 C -0.12 -5.88 5.45 30.60 0.17 -5.71 16 3 C 0.28 13.81 2.24 44.25 0.10 13.91 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.91 16 5 C -0.56 -29.21 8.73 25.60 0.22 -28.99 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -50.36 11.29 21.45 0.24 -50.11 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.67 -28.42 5.01 -447.55 -2.24 -30.67 16 14 C 0.50 19.33 6.45 87.24 0.56 19.90 16 15 O -0.54 -22.75 13.62 -3.28 -0.04 -22.79 16 16 C 0.51 17.16 7.73 87.23 0.67 17.83 16 17 O -0.52 -19.09 13.91 -3.35 -0.05 -19.13 16 18 N -0.63 -16.66 5.32 -304.77 -1.62 -18.28 16 19 C 0.11 2.79 6.30 38.17 0.24 3.03 16 20 C -0.11 -1.93 9.93 22.42 0.22 -1.71 16 21 C -0.08 -1.41 10.05 22.32 0.22 -1.19 16 22 C 0.02 0.44 7.41 22.99 0.17 0.61 16 23 O -0.20 -3.87 10.58 -9.88 -0.10 -3.98 16 24 C 0.03 0.35 11.96 66.85 0.80 1.15 16 25 C -0.24 -4.48 11.14 23.54 0.26 -4.22 16 26 C -0.14 -3.43 6.39 -20.22 -0.13 -3.55 16 27 C -0.10 -2.68 8.74 22.58 0.20 -2.48 16 28 H 0.04 1.66 7.85 -2.39 -0.02 1.65 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.64 5.65 -2.38 -0.01 1.63 16 31 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.41 16.24 8.01 -92.71 -0.74 15.50 16 35 H 0.43 9.69 8.30 -92.70 -0.77 8.92 16 36 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.25 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.94 6.22 -2.91 -0.02 3.92 16 Total: -1.00 -66.73 341.03 2.58 -64.15 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.40 Total: 31.54 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.77 Total: 5.51 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -3.62 Total: -99.07 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.20 Total: -45.91 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.73 2.58 -64.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.525 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds