Wall clock time and date at job start Tue Mar 31 2020 11:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21489 * 120.00190 * 359.97438 * 14 13 3 16 16 C 1.48347 * 119.99919 * 180.02562 * 14 13 3 17 17 C 1.41921 * 126.84360 * 179.71356 * 16 14 13 18 18 C 1.36707 * 103.81626 * 179.85408 * 17 16 14 19 19 C 1.47859 * 126.82045 * 180.14423 * 18 17 16 20 20 C 1.39605 * 120.11447 * 0.32769 * 19 18 17 21 21 C 1.37972 * 119.96566 * 179.97438 * 20 19 18 22 22 C 1.38274 * 120.20364 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.24005 * 359.97438 * 22 21 20 24 24 O 1.35906 * 119.99144 * 180.02562 * 23 22 21 25 25 C 1.38502 * 120.02601 * 359.78710 * 23 22 21 26 26 O 1.34462 * 106.36502 * 0.39964 * 18 17 16 27 27 N 1.20875 * 111.74028 * 359.72457 * 26 18 17 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.07999 * 128.09322 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.01648 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.89478 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.88040 * 179.97438 * 22 21 20 39 39 H 0.96696 * 114.00206 * 89.99575 * 24 23 22 40 40 H 1.08000 * 120.10033 * 180.25159 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3406 2.6326 0.4325 16 6 0.0430 3.3281 2.6344 17 6 -1.1910 3.9720 2.9114 18 6 -1.0498 4.4081 4.1993 19 6 -2.0493 5.1484 4.9988 20 6 -3.2923 5.4646 4.4475 21 6 -4.2229 6.1550 5.1964 22 6 -3.9284 6.5359 6.4926 23 6 -2.6951 6.2260 7.0493 24 8 -2.4112 6.6024 8.3239 25 6 -1.7556 5.5289 6.3079 26 8 0.1806 4.0351 4.5928 27 7 0.7692 3.4415 3.7197 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 -2.0432 4.0884 2.2582 36 1 -3.5257 5.1681 3.4355 37 1 -5.1843 6.3986 4.7689 38 1 -4.6606 7.0766 7.0741 39 1 -2.6559 5.9470 8.9914 40 1 -0.7972 5.2836 6.7412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602133543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:07 Heat of formation + Delta-G solvation = 3.685502 kcal Electronic energy + Delta-G solvation = -25045.467350 eV Core-core repulsion = 21214.759918 eV Total energy + Delta-G solvation = -3830.707432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.01408 -40.07152 -39.04311 -37.24719 -35.22948 -33.97160 -33.31858 -32.34752 -30.96990 -30.50629 -29.55672 -27.19507 -24.76506 -24.01787 -23.23632 -22.59168 -22.08514 -20.23205 -19.45978 -19.00446 -17.78785 -17.58817 -17.04041 -16.59232 -16.00331 -15.91133 -15.37715 -15.35140 -14.57040 -14.45056 -14.26066 -14.11573 -13.56446 -13.23431 -13.00071 -12.74179 -12.65167 -12.20382 -11.99349 -11.60678 -11.58005 -11.28624 -11.02669 -11.01604 -10.86299 -10.51608 -10.37401 -10.34018 -10.21180 -9.70762 -9.44431 -9.22230 -9.10058 -8.66857 -8.54697 -7.95854 -6.15700 -4.25161 0.25873 0.82363 1.43021 1.91152 2.71953 3.23776 3.24011 3.30522 3.33071 3.57314 3.71023 3.74705 4.13169 4.30784 4.45510 4.53584 4.69078 4.74883 4.93070 4.98969 5.13307 5.16096 5.33051 5.46137 5.55676 5.82827 5.88986 5.94568 5.99610 6.26383 6.34358 6.40407 6.59552 6.98868 7.11836 7.20688 7.24934 7.32648 7.55255 7.66344 7.82457 8.01124 8.11500 8.53609 8.68946 8.94112 9.41617 10.89786 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027920 B = 0.002495 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.628195 B =11218.245560 C =11872.594119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.580 3.420 15 O -0.530 6.530 16 C -0.011 4.011 17 C -0.159 4.159 18 C -0.008 4.008 19 C 0.003 3.997 20 C -0.100 4.100 21 C -0.099 4.099 22 C -0.136 4.136 23 C 0.107 3.893 24 O -0.497 6.497 25 C -0.123 4.123 26 O 0.125 5.875 27 N -0.327 5.327 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.265 0.735 34 H 0.395 0.605 35 H 0.183 0.817 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.393 0.607 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 9.576 17.866 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.361 3.639 15 O -0.406 6.406 16 C -0.170 4.170 17 C -0.181 4.181 18 C -0.071 4.071 19 C 0.002 3.998 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.154 4.154 23 C 0.063 3.937 24 O -0.307 6.307 25 C -0.141 4.141 26 O 0.048 5.952 27 N -0.027 5.027 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.228 0.772 35 H 0.200 0.800 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.249 0.751 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.849 9.492 16.942 23.853 hybrid contribution 0.464 -0.293 0.174 0.576 sum -13.385 9.199 17.116 23.595 Atomic orbital electron populations 1.21854 0.98318 0.98293 1.01137 1.21953 0.92653 0.99536 1.02584 1.18935 0.94612 0.89321 0.80333 0.92895 1.21209 0.90442 1.39272 1.06469 0.91951 1.24878 0.98770 0.94677 0.95262 1.69890 1.35204 1.37506 1.09326 0.86422 0.84645 0.78532 0.77388 1.20475 1.21010 1.19812 1.46484 1.13703 1.54127 1.19066 1.16880 0.83566 0.79371 0.84037 1.90770 1.51694 1.60086 1.38090 1.23933 0.93286 1.03710 0.96075 1.22633 0.99664 1.00858 0.94975 1.22337 0.87594 1.02859 0.94301 1.17407 0.91566 0.98343 0.92482 1.21210 0.91762 0.98215 1.00639 1.20963 0.99597 0.97548 0.93593 1.21595 0.96209 1.00996 0.96625 1.18285 0.92528 0.96848 0.86036 1.84848 1.85537 1.46576 1.13787 1.21576 1.00743 0.97995 0.93829 1.84861 1.22497 1.52733 1.35085 1.74165 1.19252 1.10749 0.98568 0.92980 0.94513 0.95575 0.94846 0.87946 0.92477 0.77152 0.79985 0.84626 0.84618 0.84980 0.75123 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.14 5.45 -26.74 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.31 8.73 -34.44 -0.30 -14.61 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.57 11.30 55.43 0.63 -23.94 16 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.69 -15.09 5.02 -55.72 -0.28 -15.37 16 14 C 0.58 12.14 6.42 -12.10 -0.08 12.06 16 15 O -0.53 -12.26 14.08 5.38 0.08 -12.19 16 16 C -0.01 -0.19 7.18 -82.62 -0.59 -0.79 16 17 C -0.16 -2.21 10.34 -38.73 -0.40 -2.61 16 18 C -0.01 -0.10 7.15 -36.20 -0.26 -0.36 16 19 C 0.00 0.03 5.87 -105.00 -0.62 -0.58 16 20 C -0.10 -0.79 9.58 -39.17 -0.38 -1.17 16 21 C -0.10 -0.64 10.03 -39.67 -0.40 -1.03 16 22 C -0.14 -0.91 9.98 -39.36 -0.39 -1.30 16 23 C 0.11 0.85 6.70 -39.27 -0.26 0.58 16 24 O -0.50 -3.45 13.50 -19.45 -0.26 -3.71 16 25 C -0.12 -1.10 9.67 -39.03 -0.38 -1.47 16 26 O 0.12 1.74 11.01 16.05 0.18 1.92 16 27 N -0.33 -5.38 11.82 33.35 0.39 -4.99 16 28 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 29 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.40 8.09 8.30 -40.82 -0.34 7.75 16 35 H 0.18 2.13 7.46 -52.49 -0.39 1.74 16 36 H 0.14 0.90 7.14 -52.49 -0.37 0.53 16 37 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 39 H 0.39 0.81 9.06 45.56 0.41 1.22 16 40 H 0.14 1.17 7.95 -52.49 -0.42 0.75 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -31.64 346.09 -6.95 -38.59 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.74 Total: 7.67 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.13 Total: -8.92 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.74 Total: -44.30 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.01 Total: -13.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.64 -6.95 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602133543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.277 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds