Wall clock time and date at job start Tue Mar 31 2020 11:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21489 * 120.00190 * 359.97438 * 14 13 3 16 16 C 1.48347 * 119.99919 * 180.02562 * 14 13 3 17 17 C 1.41921 * 126.84360 * 179.71356 * 16 14 13 18 18 C 1.36707 * 103.81626 * 179.85408 * 17 16 14 19 19 C 1.47859 * 126.82045 * 180.14423 * 18 17 16 20 20 C 1.39605 * 120.11447 * 0.32769 * 19 18 17 21 21 C 1.37972 * 119.96566 * 179.97438 * 20 19 18 22 22 C 1.38274 * 120.20364 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.24005 * 359.97438 * 22 21 20 24 24 O 1.35906 * 119.99144 * 180.02562 * 23 22 21 25 25 C 1.38502 * 120.02601 * 359.78710 * 23 22 21 26 26 O 1.34462 * 106.36502 * 0.39964 * 18 17 16 27 27 N 1.20875 * 111.74028 * 359.72457 * 26 18 17 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.07999 * 128.09322 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.01648 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.89478 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.88040 * 179.97438 * 22 21 20 39 39 H 0.96696 * 114.00206 * 89.99575 * 24 23 22 40 40 H 1.08000 * 120.10033 * 180.25159 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3406 2.6326 0.4325 16 6 0.0430 3.3281 2.6344 17 6 -1.1910 3.9720 2.9114 18 6 -1.0498 4.4081 4.1993 19 6 -2.0493 5.1484 4.9988 20 6 -3.2923 5.4646 4.4475 21 6 -4.2229 6.1550 5.1964 22 6 -3.9284 6.5359 6.4926 23 6 -2.6951 6.2260 7.0493 24 8 -2.4112 6.6024 8.3239 25 6 -1.7556 5.5289 6.3079 26 8 0.1806 4.0351 4.5928 27 7 0.7692 3.4415 3.7197 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 -2.0432 4.0884 2.2582 36 1 -3.5257 5.1681 3.4355 37 1 -5.1843 6.3986 4.7689 38 1 -4.6606 7.0766 7.0741 39 1 -2.6559 5.9470 8.9914 40 1 -0.7972 5.2836 6.7412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602133543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:07 Heat of formation + Delta-G solvation = -18.063597 kcal Electronic energy + Delta-G solvation = -25046.410462 eV Core-core repulsion = 21214.759918 eV Total energy + Delta-G solvation = -3831.650543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.21554 -40.78832 -40.63335 -37.80737 -37.11602 -35.23600 -34.49699 -34.03043 -32.75487 -31.24987 -30.31391 -29.15059 -26.24242 -24.93482 -24.79038 -23.71863 -22.96058 -21.83553 -21.12614 -20.00984 -18.99291 -18.74753 -18.32919 -17.55605 -17.33615 -17.16126 -16.53630 -16.36804 -16.25626 -16.10635 -15.30084 -14.92430 -14.79847 -14.65604 -14.39225 -14.01664 -13.63161 -13.57101 -13.28308 -13.21875 -12.98387 -12.71203 -12.69317 -12.57002 -12.23831 -12.13717 -11.71611 -11.56246 -11.55182 -11.34165 -11.21987 -11.12429 -10.59176 -9.83420 -9.80655 -9.42633 -8.21300 -6.38838 -0.53520 0.16227 0.27334 1.00998 1.42393 1.42715 1.53395 1.71112 2.07184 2.12369 2.40584 2.66611 2.87321 3.07877 3.13893 3.51294 3.76332 3.94011 4.01796 4.09041 4.17149 4.27788 4.44145 4.51496 4.51953 4.67339 4.69830 4.82989 4.95452 4.99520 5.19375 5.28456 5.35797 5.39549 5.39723 5.41559 5.52868 5.70126 5.76696 5.79714 6.08548 6.62636 6.66835 6.86409 6.92492 7.15485 7.34674 8.84235 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027920 B = 0.002495 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.628195 B =11218.245560 C =11872.594119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.689 5.689 14 C 0.582 3.418 15 O -0.557 6.557 16 C -0.036 4.036 17 C -0.167 4.167 18 C 0.017 3.983 19 C -0.021 4.021 20 C -0.101 4.101 21 C -0.095 4.095 22 C -0.128 4.128 23 C 0.103 3.897 24 O -0.508 6.508 25 C -0.132 4.132 26 O 0.136 5.864 27 N -0.343 5.343 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.268 0.732 34 H 0.402 0.598 35 H 0.201 0.799 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.413 0.587 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 10.622 19.856 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.592 4.592 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.193 1.193 13 N -0.337 5.337 14 C 0.366 3.634 15 O -0.435 6.435 16 C -0.193 4.193 17 C -0.189 4.189 18 C -0.046 4.046 19 C -0.022 4.022 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.146 4.146 23 C 0.058 3.942 24 O -0.322 6.322 25 C -0.151 4.151 26 O 0.057 5.943 27 N -0.041 5.041 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.218 0.782 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.173 0.827 39 H 0.272 0.728 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.018 10.527 18.960 26.379 hybrid contribution 0.685 -0.496 -0.278 0.890 sum -14.332 10.031 18.682 25.594 Atomic orbital electron populations 1.21695 0.96671 0.99591 1.00292 1.21805 0.94060 0.98660 1.01559 1.18565 0.94043 0.89495 0.80438 0.97256 1.21504 0.91198 1.39597 1.06930 0.91628 1.25723 1.03390 0.94128 0.94806 1.70020 1.37075 1.37940 1.09761 0.85366 0.78960 0.78796 0.77357 1.19570 1.20734 1.19331 1.46282 1.14596 1.54646 1.18210 1.17205 0.82637 0.78585 0.85013 1.90741 1.52261 1.60956 1.39551 1.23483 0.95198 1.05579 0.95085 1.22794 0.99109 1.01088 0.95907 1.22725 0.86816 1.01178 0.93839 1.17461 0.91846 0.99989 0.92897 1.21458 0.91177 0.97906 1.01393 1.21314 1.00315 0.96329 0.93282 1.21926 0.95991 0.99900 0.96832 1.18379 0.92748 0.96599 0.86456 1.84800 1.85798 1.47661 1.13935 1.21648 1.01185 0.98480 0.93745 1.84826 1.23279 1.51948 1.34274 1.74152 1.19833 1.11449 0.98623 0.94764 0.94330 0.93091 0.94322 0.90262 0.92315 0.76325 0.78170 0.83499 0.81691 0.82724 0.72763 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.63 2.24 44.24 0.10 14.73 16 4 H 0.01 0.58 7.58 -2.39 -0.02 0.56 16 5 C -0.55 -30.26 8.73 25.60 0.22 -30.03 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.88 11.30 21.45 0.24 -51.64 16 9 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 N -0.69 -31.30 5.02 -448.51 -2.25 -33.55 16 14 C 0.58 25.08 6.42 86.94 0.56 25.64 16 15 O -0.56 -26.65 14.08 -3.68 -0.05 -26.70 16 16 C -0.04 -1.28 7.18 42.86 0.31 -0.97 16 17 C -0.17 -4.53 10.34 22.82 0.24 -4.29 16 18 C 0.02 0.41 7.15 24.46 0.17 0.59 16 19 C -0.02 -0.37 5.87 -20.11 -0.12 -0.49 16 20 C -0.10 -1.35 9.58 22.54 0.22 -1.13 16 21 C -0.09 -0.88 10.03 22.22 0.22 -0.66 16 22 C -0.13 -1.27 9.98 22.42 0.22 -1.04 16 23 C 0.10 1.37 6.70 22.47 0.15 1.52 16 24 O -0.51 -5.84 13.50 -92.50 -1.25 -7.09 16 25 C -0.13 -2.15 9.67 22.63 0.22 -1.93 16 26 O 0.14 3.72 11.01 67.62 0.74 4.47 16 27 N -0.34 -11.28 11.82 -49.00 -0.58 -11.86 16 28 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 29 H 0.04 1.70 5.65 -2.39 -0.01 1.69 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 4.37 5.95 -2.39 -0.01 4.35 16 33 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.40 16.93 8.30 -92.71 -0.77 16.16 16 35 H 0.20 4.49 7.46 -2.91 -0.02 4.47 16 36 H 0.15 1.57 7.14 -2.91 -0.02 1.55 16 37 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 38 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.41 0.71 9.06 -74.06 -0.67 0.04 16 40 H 0.14 2.18 7.95 -2.91 -0.02 2.16 16 Total: -1.00 -69.74 346.09 2.29 -67.44 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.33 Total: 21.66 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 3.74 Total: -7.51 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -2.59 Total: -97.05 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.56 Total: -29.33 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.74 2.29 -67.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602133543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.378 kcal (2) G-P(sol) polarization free energy of solvation -69.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds