Wall clock time and date at job start Tue Mar 31 2020 11:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.50696 * 109.47454 * 120.00062 * 2 1 3 5 5 N 1.30282 * 126.28122 * 299.97768 * 4 2 1 6 6 N 1.28662 * 109.37852 * 180.02562 * 5 4 2 7 7 C 1.30271 * 109.38456 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.28667 * 180.02562 * 7 6 5 9 9 O 1.45195 * 109.47098 * 89.97519 * 8 7 6 10 10 C 1.34711 * 117.00210 * 180.02562 * 9 8 7 11 11 O 1.21464 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.47768 * 119.99779 * 180.02562 * 10 9 8 13 13 C 1.39958 * 120.03366 * 359.72224 * 12 10 9 14 14 C 1.38326 * 120.35251 * 179.78341 * 13 12 10 15 15 C 1.37759 * 120.41692 * 0.47394 * 14 13 12 16 16 C 1.40753 * 120.05089 * 359.78728 * 15 14 13 17 17 C 1.41433 * 120.17231 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99853 * 150.17647 * 17 16 15 19 19 C 1.39940 * 120.00341 * 330.17177 * 17 16 15 20 20 N 1.30828 * 120.00125 * 161.73064 * 19 17 16 21 21 Si 1.86797 * 119.99647 * 341.73150 * 19 17 16 22 22 H 1.48509 * 109.47011 * 95.41267 * 21 19 17 23 23 H 1.48496 * 109.47118 * 215.41235 * 21 19 17 24 24 H 1.48494 * 109.47416 * 335.41317 * 21 19 17 25 25 C 1.39057 * 120.02676 * 180.02562 * 12 10 9 26 26 O 1.34363 * 126.28275 * 119.99709 * 4 2 1 27 27 H 1.09000 * 109.47198 * 59.99650 * 1 2 3 28 28 H 1.08993 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46540 * 300.00091 * 1 2 3 30 30 H 1.09001 * 109.46905 * 240.00557 * 2 1 3 31 31 H 1.08996 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46758 * 300.00371 * 3 2 1 33 33 H 1.08999 * 109.47166 * 59.99828 * 3 2 1 34 34 H 1.09000 * 109.47662 * 209.97847 * 8 7 6 35 35 H 1.09006 * 109.46852 * 329.98052 * 8 7 6 36 36 H 1.07999 * 119.82506 * 0.02562 * 13 12 10 37 37 H 1.08004 * 119.78766 * 180.23983 * 14 13 12 38 38 H 1.07994 * 119.97039 * 179.76349 * 15 14 13 39 39 H 0.96997 * 120.00000 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.20486 * 359.95595 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7947 -0.3734 2.4662 6 7 2.3818 -1.2029 3.2554 7 6 3.0135 -2.0975 2.5500 8 6 3.8259 -3.2470 3.0883 9 8 2.9687 -4.4059 3.2622 10 6 3.5443 -5.5262 3.7399 11 8 4.7298 -5.5347 4.0043 12 6 2.7335 -6.7449 3.9422 13 6 1.3662 -6.7342 3.6432 14 6 0.6019 -7.8726 3.8258 15 6 1.1749 -9.0267 4.3130 16 6 2.5472 -9.0552 4.6245 17 6 3.1383 -10.2388 5.1243 18 1 4.1778 -10.4506 4.9216 19 6 2.3764 -11.1357 5.8816 20 7 2.7848 -12.3682 6.0417 21 14 0.7761 -10.5729 6.6637 22 1 -0.3600 -10.9237 5.7739 23 1 0.6031 -11.2459 7.9760 24 1 0.8129 -9.1019 6.8629 25 6 3.3269 -7.9016 4.4357 26 8 2.8080 -1.8073 1.2542 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.6244 -3.4878 2.3865 35 1 4.2586 -2.9676 4.0490 36 1 0.9063 -5.8336 3.2642 37 1 -0.4516 -7.8553 3.5885 38 1 0.5706 -9.9102 4.4564 39 1 2.2569 -12.9897 6.5669 40 1 4.3807 -7.9134 4.6718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726997311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:21 Heat of formation + Delta-G solvation = -35.278929 kcal Electronic energy + Delta-G solvation = -24726.166244 eV Core-core repulsion = 20893.769187 eV Total energy + Delta-G solvation = -3832.397056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.53589 -40.24330 -37.82062 -36.59368 -36.42599 -36.15211 -33.79036 -31.97220 -30.79876 -30.20823 -27.85815 -27.73681 -25.37620 -24.70075 -23.81812 -22.60134 -21.27466 -20.86152 -20.57589 -18.24065 -17.79352 -17.50442 -16.86662 -16.43660 -16.38631 -15.85739 -15.46547 -14.95267 -14.75727 -14.37971 -13.89850 -13.73943 -13.39911 -13.24301 -12.84901 -12.79600 -12.63900 -12.56413 -12.45843 -12.13994 -12.09372 -11.84257 -11.79950 -11.72119 -11.17885 -11.15962 -10.90771 -10.80729 -10.68781 -10.31057 -10.03402 -9.85943 -9.74469 -9.31899 -8.06556 -7.87999 -7.07847 -4.63857 0.69222 1.53532 1.75389 2.03351 2.42220 2.90591 2.99738 3.11190 3.14558 3.26005 3.48465 3.86708 3.97910 4.24863 4.35393 4.42843 4.55361 4.69249 4.82703 5.06127 5.09306 5.11316 5.17484 5.21847 5.27836 5.29160 5.34257 5.42285 5.68215 5.76039 5.81353 6.05185 6.18433 6.43055 6.53276 6.54168 6.84965 7.08018 7.28518 7.38868 7.62973 7.78369 7.99733 8.05527 8.18792 8.40784 8.61829 9.94018 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.002447 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.438938 B =11440.945730 C =11971.319365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.003 3.997 3 C -0.146 4.146 4 C 0.174 3.826 5 N -0.282 5.282 6 N -0.257 5.257 7 C 0.163 3.837 8 C 0.165 3.835 9 O -0.349 6.349 10 C 0.521 3.479 11 O -0.511 6.511 12 C -0.096 4.096 13 C -0.192 4.192 14 C -0.088 4.088 15 C -0.210 4.210 16 C 0.078 3.922 17 C -0.441 4.441 18 H 0.095 0.905 19 C 0.083 3.917 20 N -0.800 5.800 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.243 1.243 25 C -0.131 4.131 26 O -0.216 6.216 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.288 0.712 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 20.235 -10.932 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 C -0.204 4.204 4 C -0.037 4.037 5 N -0.129 5.129 6 N -0.106 5.106 7 C -0.048 4.048 8 C 0.089 3.911 9 O -0.266 6.266 10 C 0.368 3.632 11 O -0.400 6.400 12 C -0.097 4.097 13 C -0.211 4.211 14 C -0.106 4.106 15 C -0.229 4.229 16 C 0.075 3.925 17 C -0.469 4.469 18 H 0.113 0.887 19 C -0.137 4.137 20 N -0.424 5.424 21 Si 0.734 3.266 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.166 1.166 25 C -0.150 4.150 26 O -0.094 6.094 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.383 20.588 -9.733 23.022 hybrid contribution -0.110 -0.625 -0.595 0.869 sum -3.493 19.963 -10.327 22.746 Atomic orbital electron populations 1.21889 0.91447 1.03329 1.03791 1.19815 0.97251 0.95387 0.89294 1.21886 1.01631 0.93009 1.03829 1.28189 0.91560 0.85406 0.98508 1.74396 1.19024 1.21168 0.98361 1.74449 1.07524 1.01841 1.26806 1.27272 1.00739 0.99569 0.77185 1.20849 0.88597 0.78927 1.02716 1.86648 1.42210 1.19930 1.77814 1.21867 0.86477 0.82318 0.72568 1.90795 1.16688 1.84087 1.48467 1.18680 0.93674 0.89912 1.07428 1.20600 0.92543 0.98498 1.09498 1.20590 0.98122 0.93018 0.98878 1.21286 0.96341 0.97942 1.07380 1.17639 0.91291 0.92152 0.91400 1.19488 0.99813 0.99982 1.27643 0.88702 1.26167 0.99185 0.93493 0.94811 1.69680 1.38600 1.03735 1.30344 0.86342 0.80637 0.81658 0.77924 1.19423 1.21453 1.16591 1.21280 0.99992 0.90576 1.03183 1.84806 1.54315 1.39521 1.30802 0.90375 0.91845 0.90910 0.87870 0.92066 0.90396 0.90913 0.87709 0.86096 0.87398 0.87854 0.87568 0.90184 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.18 37.16 0.34 -0.54 16 2 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 3 C -0.15 -0.77 9.18 37.16 0.34 -0.43 16 4 C 0.17 1.95 6.99 -12.94 -0.09 1.86 16 5 N -0.28 -3.88 12.22 32.55 0.40 -3.48 16 6 N -0.26 -3.88 12.22 32.55 0.40 -3.48 16 7 C 0.16 2.23 8.12 -12.94 -0.11 2.12 16 8 C 0.16 2.15 6.10 36.01 0.22 2.37 16 9 O -0.35 -5.81 9.44 -40.52 -0.38 -6.19 16 10 C 0.52 9.96 7.90 34.63 0.27 10.24 16 11 O -0.51 -10.33 16.12 -19.24 -0.31 -10.64 16 12 C -0.10 -2.02 5.87 -105.05 -0.62 -2.64 16 13 C -0.19 -3.85 9.62 -38.91 -0.37 -4.22 16 14 C -0.09 -1.79 10.01 -39.72 -0.40 -2.19 16 15 C -0.21 -4.78 7.17 -38.81 -0.28 -5.06 16 16 C 0.08 1.90 5.10 -106.88 -0.55 1.36 16 17 C -0.44 -11.46 9.57 -37.73 -0.36 -11.82 16 18 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.08 2.10 5.40 -17.34 -0.09 2.00 16 20 N -0.80 -20.53 13.93 55.55 0.77 -19.76 16 21 Si 0.91 19.82 24.52 -169.99 -4.17 15.65 16 22 H -0.27 -5.61 6.71 56.52 0.38 -5.23 16 23 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.24 -5.44 6.86 56.52 0.39 -5.05 16 25 C -0.13 -3.01 9.34 -38.42 -0.36 -3.37 16 26 O -0.22 -2.72 10.87 5.38 0.06 -2.67 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.11 1.96 7.59 -52.49 -0.40 1.56 16 37 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.11 2.38 4.72 -52.49 -0.25 2.13 16 39 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.12 2.71 7.64 -52.49 -0.40 2.31 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -29.26 350.55 -5.17 -34.44 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.87 Total: 1.45 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.36 Total: -10.61 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 1.57 Total: -26.72 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.63 Total: -19.49 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.17 Total: 15.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.26 -5.17 -34.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726997311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.843 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds