Wall clock time and date at job start Tue Mar 31 2020 11:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.50696 * 109.47454 * 120.00062 * 2 1 3 5 5 N 1.30282 * 126.28122 * 299.97768 * 4 2 1 6 6 N 1.28662 * 109.37852 * 180.02562 * 5 4 2 7 7 C 1.30271 * 109.38456 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.28667 * 180.02562 * 7 6 5 9 9 O 1.45195 * 109.47098 * 89.97519 * 8 7 6 10 10 C 1.34711 * 117.00210 * 180.02562 * 9 8 7 11 11 O 1.21464 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.47768 * 119.99779 * 180.02562 * 10 9 8 13 13 C 1.39958 * 120.03366 * 359.72224 * 12 10 9 14 14 C 1.38326 * 120.35251 * 179.78341 * 13 12 10 15 15 C 1.37759 * 120.41692 * 0.47394 * 14 13 12 16 16 C 1.40753 * 120.05089 * 359.78728 * 15 14 13 17 17 C 1.41433 * 120.17231 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99853 * 150.17647 * 17 16 15 19 19 C 1.39940 * 120.00341 * 330.17177 * 17 16 15 20 20 N 1.30828 * 120.00125 * 161.73064 * 19 17 16 21 21 Si 1.86797 * 119.99647 * 341.73150 * 19 17 16 22 22 H 1.48509 * 109.47011 * 95.41267 * 21 19 17 23 23 H 1.48496 * 109.47118 * 215.41235 * 21 19 17 24 24 H 1.48494 * 109.47416 * 335.41317 * 21 19 17 25 25 C 1.39057 * 120.02676 * 180.02562 * 12 10 9 26 26 O 1.34363 * 126.28275 * 119.99709 * 4 2 1 27 27 H 1.09000 * 109.47198 * 59.99650 * 1 2 3 28 28 H 1.08993 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46540 * 300.00091 * 1 2 3 30 30 H 1.09001 * 109.46905 * 240.00557 * 2 1 3 31 31 H 1.08996 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46758 * 300.00371 * 3 2 1 33 33 H 1.08999 * 109.47166 * 59.99828 * 3 2 1 34 34 H 1.09000 * 109.47662 * 209.97847 * 8 7 6 35 35 H 1.09006 * 109.46852 * 329.98052 * 8 7 6 36 36 H 1.07999 * 119.82506 * 0.02562 * 13 12 10 37 37 H 1.08004 * 119.78766 * 180.23983 * 14 13 12 38 38 H 1.07994 * 119.97039 * 179.76349 * 15 14 13 39 39 H 0.96997 * 120.00000 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.20486 * 359.95595 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7947 -0.3734 2.4662 6 7 2.3818 -1.2029 3.2554 7 6 3.0135 -2.0975 2.5500 8 6 3.8259 -3.2470 3.0883 9 8 2.9687 -4.4059 3.2622 10 6 3.5443 -5.5262 3.7399 11 8 4.7298 -5.5347 4.0043 12 6 2.7335 -6.7449 3.9422 13 6 1.3662 -6.7342 3.6432 14 6 0.6019 -7.8726 3.8258 15 6 1.1749 -9.0267 4.3130 16 6 2.5472 -9.0552 4.6245 17 6 3.1383 -10.2388 5.1243 18 1 4.1778 -10.4506 4.9216 19 6 2.3764 -11.1357 5.8816 20 7 2.7848 -12.3682 6.0417 21 14 0.7761 -10.5729 6.6637 22 1 -0.3600 -10.9237 5.7739 23 1 0.6031 -11.2459 7.9760 24 1 0.8129 -9.1019 6.8629 25 6 3.3269 -7.9016 4.4357 26 8 2.8080 -1.8073 1.2542 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.6244 -3.4878 2.3865 35 1 4.2586 -2.9676 4.0490 36 1 0.9063 -5.8336 3.2642 37 1 -0.4516 -7.8553 3.5885 38 1 0.5706 -9.9102 4.4564 39 1 2.2569 -12.9897 6.5669 40 1 4.3807 -7.9134 4.6718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726997311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:20 Heat of formation + Delta-G solvation = -55.313618 kcal Electronic energy + Delta-G solvation = -24727.035013 eV Core-core repulsion = 20893.769187 eV Total energy + Delta-G solvation = -3833.265826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.51567 -41.71239 -39.51511 -37.81963 -37.46649 -36.92291 -35.61888 -33.13973 -32.42866 -31.89384 -28.93768 -28.16139 -27.18786 -25.54929 -25.33868 -23.70548 -22.59695 -22.14907 -21.95005 -19.87295 -18.93532 -18.55441 -18.20550 -17.96171 -17.62793 -17.33361 -16.52717 -16.38777 -15.98028 -15.62498 -15.25094 -14.78936 -14.68349 -14.59166 -14.26366 -13.99277 -13.88175 -13.70558 -13.43578 -13.20818 -13.08929 -12.93170 -12.90167 -12.73631 -12.50588 -12.40019 -12.31657 -12.09894 -11.90623 -11.83059 -11.72227 -11.55507 -11.10385 -10.83811 -9.77548 -9.67715 -8.93482 -6.57486 -0.30409 -0.12699 0.68075 0.77420 1.05959 1.25784 1.41108 1.44838 1.58117 1.69540 2.10089 2.53218 2.55740 3.12686 3.36309 3.51065 3.64159 3.83549 3.94888 3.96625 4.03027 4.13051 4.20254 4.22934 4.38101 4.49687 4.50493 4.74813 4.79962 4.82598 4.82644 4.85529 4.93033 5.00388 5.10510 5.26720 5.30196 5.33565 5.56217 5.64928 5.79093 6.03545 6.25543 6.54227 6.58634 6.71351 7.00764 8.14748 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.002447 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.438938 B =11440.945730 C =11971.319365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.000 4.000 3 C -0.142 4.142 4 C 0.188 3.812 5 N -0.312 5.312 6 N -0.281 5.281 7 C 0.158 3.842 8 C 0.163 3.837 9 O -0.349 6.349 10 C 0.530 3.470 11 O -0.526 6.526 12 C -0.103 4.103 13 C -0.168 4.168 14 C -0.086 4.086 15 C -0.213 4.213 16 C 0.063 3.937 17 C -0.481 4.481 18 H 0.058 0.942 19 C 0.048 3.952 20 N -0.843 5.843 21 Si 0.961 3.039 22 H -0.247 1.247 23 H -0.277 1.277 24 H -0.251 1.251 25 C -0.151 4.151 26 O -0.219 6.219 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.296 0.704 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 22.847 -12.746 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 C -0.200 4.200 4 C -0.022 4.022 5 N -0.158 5.158 6 N -0.131 5.131 7 C -0.054 4.054 8 C 0.089 3.911 9 O -0.265 6.265 10 C 0.377 3.623 11 O -0.416 6.416 12 C -0.104 4.104 13 C -0.187 4.187 14 C -0.104 4.104 15 C -0.232 4.232 16 C 0.061 3.939 17 C -0.510 4.510 18 H 0.076 0.924 19 C -0.168 4.168 20 N -0.468 5.468 21 Si 0.783 3.217 22 H -0.172 1.172 23 H -0.203 1.203 24 H -0.175 1.175 25 C -0.170 4.170 26 O -0.098 6.098 27 H 0.126 0.874 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.813 23.223 -11.559 26.584 hybrid contribution 0.633 -1.137 -0.222 1.320 sum -5.180 22.086 -11.781 25.562 Atomic orbital electron populations 1.21910 0.90644 1.02999 1.04650 1.20243 0.97751 0.95942 0.88041 1.21901 1.01490 0.91976 1.04632 1.29212 0.89524 0.84297 0.99197 1.74356 1.20245 1.21789 0.99370 1.74392 1.08152 1.02566 1.27950 1.27231 1.01008 0.99575 0.77579 1.21145 0.88393 0.77444 1.04155 1.86565 1.42794 1.20094 1.77049 1.21389 0.85857 0.82578 0.72487 1.90794 1.17270 1.84494 1.49043 1.18871 0.94626 0.90187 1.06694 1.21036 0.91798 0.99393 1.06516 1.21035 1.00230 0.91796 0.97330 1.21477 0.95461 0.99233 1.07043 1.17740 0.92578 0.91853 0.91758 1.19432 0.98689 1.02146 1.30778 0.92392 1.26849 1.02018 0.93263 0.94660 1.69708 1.40430 1.04687 1.32005 0.85557 0.77726 0.80538 0.77884 1.17186 1.20345 1.17496 1.21236 0.99668 0.91426 1.04720 1.84827 1.54655 1.40063 1.30275 0.87377 0.92739 0.92210 0.85584 0.92312 0.87494 0.92202 0.85492 0.84945 0.84490 0.83636 0.87146 0.89330 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 71.98 0.66 -0.67 16 2 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16 3 C -0.14 -1.12 9.18 71.98 0.66 -0.46 16 4 C 0.19 3.87 6.99 88.34 0.62 4.49 16 5 N -0.31 -8.22 12.22 -165.50 -2.02 -10.24 16 6 N -0.28 -8.21 12.22 -165.50 -2.02 -10.23 16 7 C 0.16 4.05 8.12 88.34 0.72 4.77 16 8 C 0.16 3.94 6.10 71.24 0.43 4.37 16 9 O -0.35 -10.76 9.44 -56.21 -0.53 -11.30 16 10 C 0.53 19.47 7.90 70.34 0.56 20.02 16 11 O -0.53 -20.86 16.12 19.95 0.32 -20.54 16 12 C -0.10 -4.19 5.87 -20.14 -0.12 -4.30 16 13 C -0.17 -6.15 9.62 22.71 0.22 -5.94 16 14 C -0.09 -3.18 10.01 22.18 0.22 -2.95 16 15 C -0.21 -9.33 7.17 22.77 0.16 -9.17 16 16 C 0.06 3.13 5.10 -21.32 -0.11 3.03 16 17 C -0.48 -26.42 9.57 23.47 0.22 -26.19 16 18 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 19 C 0.05 2.47 5.40 85.25 0.46 2.93 16 20 N -0.84 -44.99 13.93 21.83 0.30 -44.69 16 21 Si 0.96 40.46 24.52 68.60 1.68 42.14 16 22 H -0.25 -9.50 6.71 99.48 0.67 -8.83 16 23 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.25 -10.81 6.86 99.48 0.68 -10.13 16 25 C -0.15 -7.08 9.34 23.02 0.21 -6.86 16 26 O -0.22 -5.09 10.87 -3.67 -0.04 -5.13 16 27 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.13 2.90 8.14 -2.38 -0.02 2.89 16 36 H 0.14 4.29 7.59 -2.91 -0.02 4.26 16 37 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.11 4.72 4.72 -2.91 -0.01 4.71 16 39 H 0.30 14.11 8.30 -92.71 -0.77 13.34 16 40 H 0.11 5.13 7.64 -2.91 -0.02 5.11 16 Total: -1.00 -65.70 350.55 3.58 -62.12 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.01 Total: 14.86 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.88 Total: -16.98 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -3.74 Total: -65.16 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.25 Total: -36.97 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.68 Total: 42.14 kcal Total: -65.70 3.58 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726997311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.803 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds