Wall clock time and date at job start Tue Mar 31 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47071 * 2 1 4 4 N 1.46496 * 109.46986 * 119.99713 * 2 1 3 5 5 C 1.46500 * 120.00280 * 295.05308 * 4 2 1 6 6 C 1.50698 * 109.46948 * 275.54302 * 5 4 2 7 7 H 1.08003 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00028 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99730 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99873 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47293 * 90.00004 * 10 8 6 12 12 H 1.48500 * 109.47278 * 210.00013 * 10 8 6 13 13 H 1.48501 * 109.47256 * 329.99913 * 10 8 6 14 14 C 1.34774 * 119.99647 * 115.04851 * 4 2 1 15 15 O 1.21509 * 120.00464 * 4.83251 * 14 4 2 16 16 C 1.48152 * 119.99944 * 184.82555 * 14 4 2 17 17 C 1.39840 * 120.92119 * 312.00641 * 16 14 4 18 18 C 1.38134 * 119.00026 * 179.97438 * 17 16 14 19 19 N 1.31824 * 120.89768 * 359.97438 * 18 17 16 20 20 C 1.31804 * 122.04962 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.55070 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47708 * 5.00268 * 21 20 19 23 23 F 1.39900 * 109.47067 * 125.00303 * 21 20 19 24 24 F 1.39903 * 109.47155 * 244.99955 * 21 20 19 25 25 C 1.38171 * 120.89551 * 0.02562 * 20 19 18 26 26 H 1.08997 * 109.46970 * 300.00461 * 1 2 3 27 27 H 1.09007 * 109.46970 * 60.00112 * 1 2 3 28 28 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46661 * 240.00250 * 2 1 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46844 * 299.99424 * 3 2 1 32 32 H 1.08997 * 109.47177 * 59.99599 * 3 2 1 33 33 H 1.08996 * 109.47172 * 35.54023 * 5 4 2 34 34 H 1.08997 * 109.47343 * 155.54091 * 5 4 2 35 35 H 0.97001 * 119.99192 * 179.97438 * 9 8 6 36 36 H 1.07990 * 120.50001 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.54814 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.49762 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7560 -0.1300 2.5240 6 6 2.8069 0.8993 2.8513 7 1 3.5920 1.1142 2.1414 8 6 2.7662 1.5669 4.0571 9 7 3.6836 2.4648 4.3428 10 14 1.4080 1.1958 5.2846 11 1 1.8432 0.1009 6.1885 12 1 1.1181 2.4126 6.0849 13 1 0.1828 0.7789 4.5563 14 6 2.7089 -1.8416 1.0750 15 8 3.0025 -2.2609 -0.0270 16 6 3.1101 -2.5956 2.2855 17 6 3.7207 -1.9496 3.3650 18 6 4.0780 -2.6912 4.4743 19 7 3.8502 -3.9887 4.5232 20 6 3.2774 -4.6362 3.5283 21 6 3.0444 -6.1205 3.6439 22 9 3.4101 -6.5518 4.9236 23 9 1.6904 -6.3982 3.4275 24 9 3.8162 -6.7897 2.6880 25 6 2.8888 -3.9727 2.3803 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.7725 0.3397 2.5323 34 1 1.7843 -0.9270 3.2670 35 1 3.6547 2.9346 5.1909 36 1 3.9100 -0.8869 3.3320 37 1 4.5498 -2.2012 5.3132 38 1 2.4196 -4.5096 1.5691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809170331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:46 Heat of formation + Delta-G solvation = -158.247899 kcal Electronic energy + Delta-G solvation = -27287.862552 eV Core-core repulsion = 22908.276421 eV Total energy + Delta-G solvation = -4379.586131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.26244 -48.78343 -48.71729 -42.02660 -40.48162 -37.69450 -35.13309 -34.31155 -33.31504 -32.56585 -29.97628 -28.00820 -27.73909 -26.01857 -24.56935 -24.14921 -22.54740 -20.50111 -19.64937 -19.60255 -19.31557 -19.08033 -18.26664 -17.60753 -17.21211 -16.87605 -16.32419 -15.84595 -15.69554 -15.61179 -15.43676 -15.16704 -15.07181 -14.95705 -14.89260 -14.87128 -14.80039 -14.48011 -14.04562 -13.94250 -13.46661 -13.41232 -13.01081 -12.84516 -12.68331 -12.52397 -12.37153 -11.96591 -11.71680 -11.50008 -11.47972 -11.16317 -10.76869 -10.72036 -10.52512 -9.58272 -8.28324 -6.33493 -0.53516 -0.35863 1.28157 1.38081 1.44782 1.48664 1.51673 1.95709 2.31728 2.33355 2.37984 2.79504 3.03230 3.25859 3.30241 3.47230 3.68298 3.72876 3.99242 4.15771 4.24106 4.37162 4.38881 4.52019 4.54666 4.72988 4.83379 4.87005 4.95795 4.99758 5.06361 5.28856 5.35563 5.41500 5.53664 5.64695 6.14715 6.39370 6.46736 6.72814 6.99434 7.29922 8.85322 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.005237 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.776638 B = 5344.845273 C = 6580.367499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 C -0.142 4.142 4 N -0.574 5.574 5 C 0.206 3.794 6 C -0.528 4.528 7 H 0.051 0.949 8 C 0.043 3.957 9 N -0.925 5.925 10 Si 0.910 3.090 11 H -0.259 1.259 12 H -0.288 1.288 13 H -0.248 1.248 14 C 0.557 3.443 15 O -0.576 6.576 16 C -0.088 4.088 17 C -0.102 4.102 18 C 0.102 3.898 19 N -0.443 5.443 20 C 0.015 3.985 21 C 0.534 3.466 22 F -0.165 7.165 23 F -0.168 7.168 24 F -0.169 7.169 25 C -0.076 4.076 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.269 0.731 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -10.256 -1.533 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 C -0.200 4.200 4 N -0.303 5.303 5 C 0.085 3.915 6 C -0.566 4.566 7 H 0.069 0.931 8 C -0.159 4.159 9 N -0.564 5.564 10 Si 0.734 3.266 11 H -0.183 1.183 12 H -0.214 1.214 13 H -0.171 1.171 14 C 0.345 3.655 15 O -0.458 6.458 16 C -0.099 4.099 17 C -0.122 4.122 18 C -0.056 4.056 19 N -0.152 5.152 20 C -0.123 4.123 21 C 0.479 3.521 22 F -0.146 7.146 23 F -0.149 7.149 24 F -0.151 7.151 25 C -0.097 4.097 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.191 0.809 37 H 0.214 0.786 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.013 -10.815 -1.238 11.984 hybrid contribution -0.396 0.650 0.078 0.765 sum -5.409 -10.165 -1.160 11.572 Atomic orbital electron populations 1.22085 0.93030 1.02317 1.03491 1.21203 0.95482 0.93479 0.87175 1.22014 1.00111 0.95120 1.02756 1.48032 1.51800 1.21205 1.09276 1.19870 0.97463 0.94221 0.79995 1.21296 1.11543 1.21171 1.02549 0.93129 1.25434 0.97053 0.94107 0.99303 1.69997 1.35686 1.26073 1.24601 0.86266 0.81429 0.78594 0.80316 1.18311 1.21438 1.17126 1.18270 0.78067 0.81357 0.87840 1.90704 1.57082 1.70343 1.27626 1.20299 1.00245 0.94018 0.95314 1.23642 0.92119 1.04702 0.91692 1.23174 0.96497 0.87438 0.98447 1.67104 1.09321 1.11339 1.27409 1.20885 1.04036 0.93944 0.93474 1.17580 0.74351 0.85933 0.74233 1.93219 1.91382 1.90910 1.39073 1.93235 1.32586 1.94518 1.94556 1.93241 1.75326 1.82139 1.64354 1.21808 0.96891 0.93227 0.97755 0.92308 0.89057 0.92575 0.89564 0.94927 0.90065 0.91975 0.93520 0.94208 0.92118 0.80850 0.78564 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.25 71.98 0.67 -3.22 16 2 C 0.13 4.17 3.25 45.00 0.15 4.32 16 3 C -0.14 -4.69 8.13 71.98 0.59 -4.10 16 4 N -0.57 -21.15 2.42 -805.20 -1.95 -23.10 16 5 C 0.21 7.93 3.23 85.63 0.28 8.21 16 6 C -0.53 -23.98 5.53 25.60 0.14 -23.83 16 7 H 0.05 2.66 7.19 -2.91 -0.02 2.64 16 8 C 0.04 2.01 5.47 84.66 0.46 2.48 16 9 N -0.93 -48.78 13.96 21.45 0.30 -48.48 16 10 Si 0.91 36.01 27.47 68.60 1.88 37.89 16 11 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 12 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.25 -9.08 6.54 99.48 0.65 -8.43 16 14 C 0.56 21.24 7.30 86.88 0.63 21.88 16 15 O -0.58 -24.17 16.38 -3.74 -0.06 -24.23 16 16 C -0.09 -3.02 4.97 -19.88 -0.10 -3.12 16 17 C -0.10 -3.46 7.64 22.63 0.17 -3.29 16 18 C 0.10 3.06 11.17 84.67 0.95 4.00 16 19 N -0.44 -13.56 9.71 -184.04 -1.79 -15.35 16 20 C 0.02 0.45 6.26 42.55 0.27 0.72 16 21 C 0.53 14.00 3.31 71.23 0.24 14.24 16 22 F -0.16 -4.46 16.85 44.97 0.76 -3.70 16 23 F -0.17 -4.15 17.16 44.97 0.77 -3.38 16 24 F -0.17 -4.33 17.28 44.97 0.78 -3.55 16 25 C -0.08 -2.30 9.34 22.63 0.21 -2.09 16 26 H 0.06 1.56 6.87 -2.39 -0.02 1.54 16 27 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 2.89 6.91 -2.39 -0.02 2.87 16 30 H 0.03 1.21 7.68 -2.39 -0.02 1.20 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.28 6.68 -2.39 -0.02 2.27 16 33 H 0.05 1.76 5.76 -2.39 -0.01 1.74 16 34 H 0.04 1.50 4.85 -2.39 -0.01 1.49 16 35 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.17 6.74 4.83 -2.92 -0.01 6.73 16 37 H 0.20 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -55.07 326.46 6.40 -48.67 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.06 Total: 19.05 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 4.65 Total: 16.19 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.43 Total: -86.93 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 9 Polarization: -12.94 SS G_CDS: 2.31 Total: -10.64 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 1.88 Total: 37.89 kcal Total: -55.07 6.40 -48.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809170331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.577 kcal (2) G-P(sol) polarization free energy of solvation -55.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds