Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 C 1.50696 * 109.47329 * 120.00159 * 2 1 3 5 5 N 1.30011 * 127.33423 * 299.95516 * 4 2 1 6 6 O 1.20663 * 112.30952 * 180.02562 * 5 4 2 7 7 C 1.33510 * 113.15226 * 359.71472 * 6 5 4 8 8 C 1.37367 * 106.33569 * 0.45350 * 7 6 5 9 9 C 1.47380 * 128.56069 * 179.85809 * 8 7 6 10 10 O 1.21622 * 119.99623 * 179.68014 * 9 8 7 11 11 N 1.34776 * 120.00153 * 359.67282 * 9 8 7 12 12 C 1.39869 * 119.99879 * 175.50211 * 11 9 8 13 13 C 1.38975 * 120.03522 * 215.15203 * 12 11 9 14 14 C 1.38148 * 120.06628 * 179.97438 * 13 12 11 15 15 C 1.38170 * 120.13832 * 359.70653 * 14 13 12 16 16 C 1.38917 * 120.07562 * 0.54879 * 15 14 13 17 17 O 1.35747 * 120.03334 * 179.74620 * 16 15 14 18 18 C 1.34828 * 117.00205 * 354.34930 * 17 16 15 19 19 H 1.07999 * 120.00019 * 5.01967 * 18 17 16 20 20 C 1.38653 * 119.99765 * 185.02649 * 18 17 16 21 21 N 1.31555 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99733 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47029 * 119.99746 * 22 20 18 25 25 H 1.48496 * 109.47068 * 239.99470 * 22 20 18 26 26 C 1.38720 * 120.03546 * 35.13134 * 12 11 9 27 27 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46803 * 299.99845 * 1 2 3 29 29 H 1.09000 * 109.47364 * 59.99921 * 1 2 3 30 30 H 1.09006 * 109.47046 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.47453 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46925 * 300.00348 * 3 2 1 33 33 H 1.08993 * 109.47111 * 60.00090 * 3 2 1 34 34 H 1.07999 * 126.82898 * 180.31097 * 7 6 5 35 35 H 0.97002 * 119.99915 * 355.50410 * 11 9 8 36 36 H 1.08006 * 119.96606 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.93495 * 179.97438 * 14 13 12 38 38 H 1.08006 * 119.96468 * 180.29680 * 15 14 13 39 39 H 0.97000 * 120.00432 * 180.02562 * 21 20 18 40 40 H 1.07994 * 120.07422 * 0.04572 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.8085 -0.3925 2.4710 6 8 2.3447 -1.1503 3.2419 7 6 3.0252 -2.1242 2.6329 8 6 2.8809 -1.9110 1.2836 9 6 3.4343 -2.6952 0.1652 10 8 3.2010 -2.3662 -0.9822 11 7 4.1990 -3.7768 0.4140 12 6 4.6462 -4.5753 -0.6438 13 6 4.7617 -5.9501 -0.4769 14 6 5.2029 -6.7395 -1.5213 15 6 5.5247 -6.1659 -2.7364 16 6 5.4164 -4.7917 -2.9081 17 8 5.7377 -4.2285 -4.1007 18 6 6.2656 -5.0405 -5.0387 19 1 6.3402 -6.1020 -4.8540 20 6 6.7126 -4.5128 -6.2404 21 7 6.6214 -3.2199 -6.4656 22 14 7.4447 -5.6377 -7.5396 23 1 7.4335 -7.0380 -7.0453 24 1 6.6395 -5.5463 -8.7841 25 1 8.8422 -5.2232 -7.8228 26 6 4.9744 -3.9958 -1.8606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.5806 -2.9199 3.1069 35 1 4.4391 -4.0015 1.3265 36 1 4.5064 -6.4019 0.4704 37 1 5.2923 -7.8076 -1.3891 38 1 5.8647 -6.7863 -3.5526 39 1 6.9338 -2.8507 -7.3064 40 1 4.8858 -2.9276 -1.9928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858556505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = 22.635807 kcal Electronic energy + Delta-G solvation = -25391.083405 eV Core-core repulsion = 21561.197720 eV Total energy + Delta-G solvation = -3829.885685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.13209 -40.18695 -38.62859 -36.74941 -36.22462 -34.30424 -32.78771 -32.26097 -31.83091 -29.55299 -28.53200 -27.28949 -25.48167 -24.92985 -23.79563 -22.36647 -21.46804 -20.60444 -20.05996 -18.57234 -18.06423 -17.89107 -17.19543 -16.56048 -15.77791 -15.13120 -15.06232 -14.99464 -14.91527 -14.27735 -14.19512 -13.89090 -13.57551 -13.45739 -13.41138 -12.90162 -12.56483 -12.35172 -11.97780 -11.77474 -11.60079 -11.49556 -11.45029 -11.28261 -11.05038 -10.94059 -10.80111 -10.45372 -10.11393 -9.98698 -9.94737 -9.82681 -9.23892 -8.84363 -7.77777 -7.23136 -6.44060 -4.03267 0.80343 1.59499 2.07292 2.30318 2.67840 3.09145 3.11634 3.14616 3.19914 3.21159 3.80297 3.96991 4.02302 4.52048 4.60170 4.72438 4.93917 4.99206 5.01306 5.11172 5.22113 5.31828 5.50709 5.57681 5.59293 5.68454 5.76436 5.77817 5.93795 6.03648 6.08745 6.14367 6.25685 6.33597 6.60705 6.80025 6.98331 7.03928 7.31469 7.43432 7.55970 7.73067 7.98577 8.00499 8.18457 9.00833 9.71486 10.73723 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003098 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.754467 B = 9035.616805 C =10317.547208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.142 4.142 4 C 0.083 3.917 5 N -0.355 5.355 6 O 0.097 5.903 7 C -0.011 4.011 8 C -0.246 4.246 9 C 0.587 3.413 10 O -0.494 6.494 11 N -0.661 5.661 12 C 0.173 3.827 13 C -0.234 4.234 14 C -0.058 4.058 15 C -0.243 4.243 16 C 0.166 3.834 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.185 4.185 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.226 0.774 35 H 0.404 0.596 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 1.110 17.644 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 C -0.200 4.200 4 C -0.080 4.080 5 N -0.062 5.062 6 O 0.037 5.963 7 C -0.094 4.094 8 C -0.253 4.253 9 C 0.373 3.627 10 O -0.368 6.368 11 N -0.305 5.305 12 C 0.080 3.920 13 C -0.255 4.255 14 C -0.077 4.077 15 C -0.263 4.263 16 C 0.112 3.888 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.206 4.206 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.239 0.761 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.645 2.752 17.173 18.998 hybrid contribution 0.956 -1.443 -0.570 1.822 sum -6.689 1.309 16.603 17.948 Atomic orbital electron populations 1.21805 0.93385 1.02290 1.02420 1.19876 0.96298 0.95921 0.92796 1.21808 1.01494 0.94248 1.02410 1.24861 0.95968 0.93360 0.93817 1.73624 1.16828 1.13822 1.01882 1.84587 1.48490 1.29282 1.33905 1.26397 0.96569 0.94412 0.91981 1.22349 1.07950 1.01122 0.93907 1.16902 0.78367 0.80023 0.87378 1.90875 1.57824 1.67114 1.21021 1.43101 1.50964 1.26923 1.09552 1.17113 0.98071 0.89203 0.87620 1.20253 1.13819 0.91175 1.00259 1.20501 0.96605 0.98290 0.92307 1.21204 1.11128 0.95037 0.98946 1.19131 0.92017 0.91028 0.86667 1.83992 1.68751 1.37153 1.17623 1.21402 1.40019 0.91046 0.94369 0.88897 1.25310 0.96934 0.96595 0.97701 1.70059 1.43364 1.11098 1.24837 0.85640 0.78654 0.79296 0.79777 1.19066 1.20137 1.20142 1.20177 1.08305 1.00627 0.91513 0.92455 0.92381 0.91349 0.86591 0.92336 0.91332 0.92387 0.75789 0.76141 0.87327 0.86960 0.85392 0.92032 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 2 C -0.03 -0.37 3.33 -91.78 -0.31 -0.68 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C 0.08 1.06 6.09 -79.77 -0.49 0.57 16 5 N -0.36 -4.31 12.01 34.78 0.42 -3.89 16 6 O 0.10 0.96 11.06 18.61 0.21 1.16 16 7 C -0.01 -0.09 11.86 30.42 0.36 0.27 16 8 C -0.25 -2.96 6.47 -102.90 -0.67 -3.63 16 9 C 0.59 8.91 7.65 -12.54 -0.10 8.82 16 10 O -0.49 -9.71 12.69 5.26 0.07 -9.64 16 11 N -0.66 -8.95 5.33 -10.86 -0.06 -9.00 16 12 C 0.17 3.08 6.29 -83.74 -0.53 2.55 16 13 C -0.23 -3.79 9.96 -39.34 -0.39 -4.19 16 14 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 15 C -0.24 -5.23 9.17 -39.35 -0.36 -5.59 16 16 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 17 O -0.17 -5.02 9.75 0.06 0.00 -5.02 16 18 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 22 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.19 -4.14 8.63 -39.20 -0.34 -4.48 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.12 1.71 6.29 -51.93 -0.33 1.38 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.23 0.57 7.69 -52.49 -0.40 0.17 16 35 H 0.40 3.51 8.02 -40.82 -0.33 3.18 16 36 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.74 5.63 -52.48 -0.30 2.44 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 40 H 0.13 3.22 6.23 -52.49 -0.33 2.90 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -34.50 347.19 -5.46 -39.96 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.47 Total: 6.45 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.59 Total: -16.05 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 1.12 Total: -37.59 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.27 Total: -13.50 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.50 -5.46 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858556505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.591 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds