Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 C 1.50696 * 109.47329 * 120.00159 * 2 1 3 5 5 N 1.30011 * 127.33423 * 299.95516 * 4 2 1 6 6 O 1.20663 * 112.30952 * 180.02562 * 5 4 2 7 7 C 1.33510 * 113.15226 * 359.71472 * 6 5 4 8 8 C 1.37367 * 106.33569 * 0.45350 * 7 6 5 9 9 C 1.47380 * 128.56069 * 179.85809 * 8 7 6 10 10 O 1.21622 * 119.99623 * 179.68014 * 9 8 7 11 11 N 1.34776 * 120.00153 * 359.67282 * 9 8 7 12 12 C 1.39869 * 119.99879 * 175.50211 * 11 9 8 13 13 C 1.38975 * 120.03522 * 215.15203 * 12 11 9 14 14 C 1.38148 * 120.06628 * 179.97438 * 13 12 11 15 15 C 1.38170 * 120.13832 * 359.70653 * 14 13 12 16 16 C 1.38917 * 120.07562 * 0.54879 * 15 14 13 17 17 O 1.35747 * 120.03334 * 179.74620 * 16 15 14 18 18 C 1.34828 * 117.00205 * 354.34930 * 17 16 15 19 19 H 1.07999 * 120.00019 * 5.01967 * 18 17 16 20 20 C 1.38653 * 119.99765 * 185.02649 * 18 17 16 21 21 N 1.31555 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99733 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47029 * 119.99746 * 22 20 18 25 25 H 1.48496 * 109.47068 * 239.99470 * 22 20 18 26 26 C 1.38720 * 120.03546 * 35.13134 * 12 11 9 27 27 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46803 * 299.99845 * 1 2 3 29 29 H 1.09000 * 109.47364 * 59.99921 * 1 2 3 30 30 H 1.09006 * 109.47046 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.47453 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46925 * 300.00348 * 3 2 1 33 33 H 1.08993 * 109.47111 * 60.00090 * 3 2 1 34 34 H 1.07999 * 126.82898 * 180.31097 * 7 6 5 35 35 H 0.97002 * 119.99915 * 355.50410 * 11 9 8 36 36 H 1.08006 * 119.96606 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.93495 * 179.97438 * 14 13 12 38 38 H 1.08006 * 119.96468 * 180.29680 * 15 14 13 39 39 H 0.97000 * 120.00432 * 180.02562 * 21 20 18 40 40 H 1.07994 * 120.07422 * 0.04572 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.8085 -0.3925 2.4710 6 8 2.3447 -1.1503 3.2419 7 6 3.0252 -2.1242 2.6329 8 6 2.8809 -1.9110 1.2836 9 6 3.4343 -2.6952 0.1652 10 8 3.2010 -2.3662 -0.9822 11 7 4.1990 -3.7768 0.4140 12 6 4.6462 -4.5753 -0.6438 13 6 4.7617 -5.9501 -0.4769 14 6 5.2029 -6.7395 -1.5213 15 6 5.5247 -6.1659 -2.7364 16 6 5.4164 -4.7917 -2.9081 17 8 5.7377 -4.2285 -4.1007 18 6 6.2656 -5.0405 -5.0387 19 1 6.3402 -6.1020 -4.8540 20 6 6.7126 -4.5128 -6.2404 21 7 6.6214 -3.2199 -6.4656 22 14 7.4447 -5.6377 -7.5396 23 1 7.4335 -7.0380 -7.0453 24 1 6.6395 -5.5463 -8.7841 25 1 8.8422 -5.2232 -7.8228 26 6 4.9744 -3.9958 -1.8606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.5806 -2.9199 3.1069 35 1 4.4391 -4.0015 1.3265 36 1 4.5064 -6.4019 0.4704 37 1 5.2923 -7.8076 -1.3891 38 1 5.8647 -6.7863 -3.5526 39 1 6.9338 -2.8507 -7.3064 40 1 4.8858 -2.9276 -1.9928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858556505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = -1.698314 kcal Electronic energy + Delta-G solvation = -25392.138612 eV Core-core repulsion = 21561.197720 eV Total energy + Delta-G solvation = -3830.940891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.02164 -41.56032 -40.29957 -38.26645 -37.29062 -35.69475 -34.27601 -33.73477 -32.73696 -31.16356 -30.05184 -28.19237 -27.37636 -26.16055 -24.68002 -23.79849 -23.04692 -21.81989 -21.02089 -20.00336 -19.50721 -18.82314 -18.76334 -17.66499 -17.23206 -16.75281 -16.45336 -16.25904 -15.93394 -15.82212 -15.61606 -15.47123 -15.13026 -14.46523 -14.39661 -14.32103 -14.23581 -13.59414 -13.22027 -13.21351 -13.00262 -12.83091 -12.70438 -12.39055 -12.38649 -12.36100 -12.08787 -11.93137 -11.47065 -11.34821 -11.03790 -10.89523 -10.81853 -10.76749 -9.35978 -8.88543 -8.46248 -6.15740 -0.07294 0.50725 0.69985 0.74057 1.35105 1.44275 1.54617 1.72131 2.03175 2.16319 2.23360 2.83949 2.88686 3.16521 3.17718 3.48234 3.71598 3.91264 4.05452 4.05780 4.11856 4.15712 4.37949 4.42354 4.52661 4.64042 4.65864 4.68256 4.75730 4.78860 4.84018 5.02040 5.04983 5.12081 5.17512 5.28897 5.40148 5.43206 5.64554 5.75082 6.03747 6.19513 6.36811 6.97616 7.04929 7.17824 7.80627 8.77764 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003098 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.754467 B = 9035.616805 C =10317.547208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.136 4.136 4 C 0.064 3.936 5 N -0.367 5.367 6 O 0.106 5.894 7 C 0.044 3.956 8 C -0.284 4.284 9 C 0.588 3.412 10 O -0.551 6.551 11 N -0.642 5.642 12 C 0.183 3.817 13 C -0.198 4.198 14 C -0.049 4.049 15 C -0.254 4.254 16 C 0.125 3.875 17 O -0.236 6.236 18 C -0.413 4.413 19 H 0.107 0.893 20 C -0.027 4.027 21 N -0.924 5.924 22 Si 1.023 2.977 23 H -0.246 1.246 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.212 4.212 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.288 0.712 35 H 0.432 0.568 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 -2.123 21.812 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.099 4.099 5 N -0.073 5.073 6 O 0.047 5.953 7 C -0.038 4.038 8 C -0.292 4.292 9 C 0.377 3.623 10 O -0.429 6.429 11 N -0.289 5.289 12 C 0.089 3.911 13 C -0.218 4.218 14 C -0.068 4.068 15 C -0.273 4.273 16 C 0.074 3.926 17 O -0.143 6.143 18 C -0.489 4.489 19 H 0.125 0.875 20 C -0.224 4.224 21 N -0.562 5.562 22 Si 0.842 3.158 23 H -0.169 1.169 24 H -0.196 1.196 25 H -0.193 1.193 26 C -0.234 4.234 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.303 0.697 35 H 0.273 0.727 36 H 0.187 0.813 37 H 0.179 0.821 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.825 -0.507 21.463 22.851 hybrid contribution 0.881 -0.494 -1.421 1.743 sum -6.944 -1.001 20.043 21.235 Atomic orbital electron populations 1.21753 0.92153 1.02046 1.03250 1.19822 0.97400 0.96288 0.91997 1.21765 1.00643 0.93724 1.03265 1.24947 0.96719 0.94125 0.94102 1.73634 1.17575 1.14637 1.01442 1.84576 1.48065 1.29308 1.33382 1.27377 0.93137 0.93276 0.89999 1.22018 1.10462 1.01902 0.94773 1.17337 0.77664 0.79883 0.87422 1.90880 1.59793 1.68510 1.23699 1.42901 1.50076 1.25956 1.09941 1.17239 0.96332 0.90654 0.86922 1.20917 1.09224 0.89670 1.01992 1.21055 0.94387 1.00837 0.90489 1.21355 1.11622 0.93445 1.00910 1.19686 0.93636 0.93038 0.86237 1.83960 1.71761 1.38869 1.19696 1.21952 1.40222 0.91805 0.94898 0.87550 1.26698 0.97245 0.98387 1.00085 1.70228 1.46353 1.13720 1.25948 0.84475 0.77654 0.77645 0.76045 1.16920 1.19550 1.19342 1.20214 1.10302 0.99281 0.93604 0.93191 0.91568 0.90417 0.89801 0.93576 0.90433 0.91486 0.69693 0.72684 0.81273 0.82143 0.86000 0.91929 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.18 71.98 0.66 -2.30 16 2 C -0.04 -0.94 3.33 -11.54 -0.04 -0.98 16 3 C -0.14 -3.14 9.18 71.98 0.66 -2.48 16 4 C 0.06 1.60 6.09 45.16 0.28 1.88 16 5 N -0.37 -8.23 12.01 -44.76 -0.54 -8.76 16 6 O 0.11 1.70 11.06 76.83 0.85 2.55 16 7 C 0.04 0.48 11.86 67.61 0.80 1.29 16 8 C -0.28 -6.33 6.47 -18.75 -0.12 -6.45 16 9 C 0.59 17.60 7.65 86.65 0.66 18.26 16 10 O -0.55 -23.17 12.69 -4.10 -0.05 -23.23 16 11 N -0.64 -15.44 5.33 -306.53 -1.63 -17.07 16 12 C 0.18 6.14 6.29 38.15 0.24 6.38 16 13 C -0.20 -5.32 9.96 22.43 0.22 -5.10 16 14 C -0.05 -1.52 10.03 22.23 0.22 -1.30 16 15 C -0.25 -10.85 9.17 22.42 0.21 -10.65 16 16 C 0.13 6.53 6.64 22.56 0.15 6.68 16 17 O -0.24 -15.01 9.75 -22.69 -0.22 -15.23 16 18 C -0.41 -24.70 9.49 67.92 0.64 -24.06 16 19 H 0.11 5.73 5.20 -2.91 -0.02 5.72 16 20 C -0.03 -1.59 5.49 84.83 0.47 -1.13 16 21 N -0.92 -58.94 13.67 21.61 0.30 -58.64 16 22 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 23 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 C -0.21 -9.99 8.63 22.51 0.19 -9.80 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 2.75 6.29 -2.38 -0.01 2.74 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.29 -0.85 7.69 -2.91 -0.02 -0.88 16 35 H 0.43 5.00 8.02 -92.71 -0.74 4.26 16 36 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.26 5.63 -2.91 -0.02 5.25 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.10 5.35 6.23 -2.91 -0.02 5.33 16 Total: -1.00 -88.68 347.19 6.33 -82.34 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.36 Total: 22.13 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 5.25 Total: -29.76 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.87 Total: -84.48 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: 0.58 Total: -35.91 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -88.68 6.33 -82.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858556505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.646 kcal (2) G-P(sol) polarization free energy of solvation -88.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds