Wall clock time and date at job start Tue Mar 31 2020 10:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34847 * 126.63568 * 2 1 4 4 C 1.47643 * 125.45166 * 359.96772 * 3 2 1 5 5 O 1.21565 * 119.99772 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00022 * 179.97438 * 4 3 2 7 7 C 1.39173 * 119.99999 * 174.83221 * 6 4 3 8 8 C 1.39694 * 119.57820 * 185.24908 * 7 6 4 9 9 C 1.38646 * 119.49642 * 180.02562 * 8 7 6 10 10 C 1.38352 * 118.67175 * 359.97438 * 9 8 7 11 11 C 1.40577 * 119.13311 * 0.02562 * 10 9 8 12 12 C 1.41336 * 119.78639 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00123 * 359.97438 * 12 11 10 14 14 C 1.40033 * 120.00002 * 180.02562 * 12 11 10 15 15 N 1.30739 * 119.99915 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99984 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46817 * 119.99948 * 16 14 12 19 19 H 1.48499 * 109.47466 * 240.00133 * 16 14 12 20 20 N 1.31926 * 119.57857 * 4.98390 * 7 6 4 21 21 C 1.47186 * 109.09497 * 179.85683 * 3 2 1 22 22 O 1.21489 * 125.02113 * 180.15324 * 21 3 2 23 23 O 1.34482 * 109.95790 * 0.43195 * 21 3 2 24 24 C 1.45454 * 107.98885 * 359.75493 * 23 21 3 25 25 C 1.53002 * 110.09947 * 240.81126 * 24 23 21 26 26 C 1.52994 * 110.15476 * 119.22256 * 24 23 21 27 27 H 1.08994 * 109.46997 * 269.68604 * 1 2 3 28 28 H 1.09005 * 109.47103 * 29.68664 * 1 2 3 29 29 H 1.09001 * 109.46908 * 149.68580 * 1 2 3 30 30 H 0.96995 * 120.00086 * 354.83852 * 6 4 3 31 31 H 1.08003 * 120.25269 * 359.97438 * 8 7 6 32 32 H 1.08002 * 120.66423 * 180.02562 * 9 8 7 33 33 H 1.07997 * 120.43506 * 179.97438 * 10 9 8 34 34 H 0.97002 * 120.00343 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46626 * 176.80425 * 25 24 23 36 36 H 1.09008 * 109.47159 * 296.79756 * 25 24 23 37 37 H 1.08999 * 109.47587 * 56.80188 * 25 24 23 38 38 H 1.09009 * 109.47079 * 303.16989 * 26 24 23 39 39 H 1.09005 * 109.47474 * 63.16314 * 26 24 23 40 40 H 1.08998 * 109.47325 * 183.16994 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3117 1.0821 0.0000 4 6 1.8575 2.4869 -0.0007 5 8 0.6688 2.7415 -0.0008 6 7 2.7609 3.4871 -0.0001 7 6 2.3366 4.8081 -0.1093 8 6 3.2831 5.8296 -0.2186 9 6 2.8585 7.1450 -0.3268 10 6 1.4999 7.4064 -0.3235 11 6 0.5971 6.3348 -0.2105 12 6 -0.7937 6.5860 -0.2063 13 1 -1.1599 7.5987 -0.2892 14 6 -1.6971 5.5220 -0.0934 15 7 -1.2539 4.2962 0.0085 16 14 -3.5352 5.8541 -0.0870 17 1 -3.7749 7.3141 -0.2135 18 1 -4.1697 5.1480 -1.2291 19 1 -4.1224 5.3640 1.1858 20 7 1.0455 5.0791 -0.1135 21 6 3.7151 0.6385 0.0035 22 8 4.6797 1.3770 0.0070 23 8 3.7718 -0.7051 -0.0039 24 6 2.4086 -1.2123 -0.0067 25 6 2.1601 -2.0593 1.2430 26 6 2.1590 -2.0464 -1.2648 27 1 -0.3633 -0.0056 1.0276 28 1 -0.3633 0.8928 -0.5090 29 1 -0.3633 -0.8872 -0.5187 30 1 3.7067 3.2863 0.0764 31 1 4.3377 5.5966 -0.2181 32 1 3.5740 7.9495 -0.4128 33 1 1.1377 8.4205 -0.4058 34 1 -1.8795 3.5592 0.0870 35 1 1.1205 -2.3868 1.2591 36 1 2.8153 -2.9304 1.2277 37 1 2.3674 -1.4643 2.1324 38 1 2.3657 -1.4421 -2.1483 39 1 2.8142 -2.9175 -1.2592 40 1 1.1195 -2.3736 -1.2835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:36 Heat of formation + Delta-G solvation = -54.998240 kcal Electronic energy + Delta-G solvation = -26679.978639 eV Core-core repulsion = 22846.726489 eV Total energy + Delta-G solvation = -3833.252150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.92446 -40.88765 -39.25387 -39.10886 -36.07732 -35.65007 -34.85434 -33.33007 -32.24652 -31.11379 -29.57063 -28.44455 -27.51157 -25.22043 -24.35665 -23.42907 -22.63364 -21.16958 -20.78617 -19.54769 -18.16123 -17.99780 -17.61052 -17.45326 -16.54251 -16.32344 -15.97517 -15.94159 -15.84849 -15.46760 -14.99022 -14.76323 -14.63713 -14.33055 -14.31639 -13.86918 -13.74613 -13.46991 -13.26068 -13.07939 -12.88477 -12.83328 -12.74437 -12.55925 -12.44604 -12.34507 -11.97525 -11.74318 -11.59527 -11.54360 -10.90003 -10.79073 -10.58728 -9.92542 -9.17405 -8.86926 -8.05715 -6.42288 -0.57632 0.83086 1.15565 1.32267 1.43054 1.54537 1.57131 1.69703 2.25082 2.29054 2.42632 2.56452 2.82718 3.00211 3.54260 3.69925 3.70616 4.01949 4.05691 4.30636 4.37622 4.62042 4.66205 4.67662 4.69058 4.71483 4.73540 4.81464 4.89904 4.92982 5.00447 5.09341 5.19354 5.26106 5.38037 5.46306 5.65472 5.79528 5.89305 6.11812 6.16846 6.30518 6.65626 6.79960 7.05919 7.48497 8.27778 8.58439 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.004771 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.182670 B = 5867.319949 C = 7602.343707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.043 3.957 3 C -0.311 4.311 4 C 0.531 3.469 5 O -0.431 6.431 6 N -0.657 5.657 7 C 0.349 3.651 8 C -0.355 4.355 9 C -0.032 4.032 10 C -0.325 4.325 11 C 0.236 3.764 12 C -0.461 4.461 13 H 0.087 0.913 14 C 0.012 3.988 15 N -0.688 5.688 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.268 1.268 20 N -0.501 5.501 21 C 0.515 3.485 22 O -0.493 6.493 23 O -0.317 6.317 24 C 0.106 3.894 25 C -0.145 4.145 26 C -0.146 4.146 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.416 0.584 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.275 0.725 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 -18.336 0.327 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.040 3.960 3 C -0.316 4.316 4 C 0.316 3.684 5 O -0.299 6.299 6 N -0.306 5.306 7 C 0.111 3.889 8 C -0.380 4.380 9 C -0.056 4.056 10 C -0.348 4.348 11 C 0.110 3.890 12 C -0.492 4.492 13 H 0.105 0.895 14 C -0.214 4.214 15 N -0.307 5.307 16 Si 0.799 3.201 17 H -0.182 1.182 18 H -0.193 1.193 19 H -0.193 1.193 20 N -0.221 5.221 21 C 0.360 3.640 22 O -0.382 6.382 23 O -0.233 6.233 24 C 0.069 3.931 25 C -0.202 4.202 26 C -0.203 4.203 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.254 0.746 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.184 -18.956 0.399 18.961 hybrid contribution 0.938 1.420 -0.023 1.702 sum 0.753 -17.536 0.377 17.556 Atomic orbital electron populations 1.20995 0.84760 1.05935 1.05369 1.24642 0.98967 0.92678 0.79683 1.22344 0.95174 0.95420 1.18632 1.18140 0.86951 0.84022 0.79323 1.91186 1.14153 1.82574 1.42001 1.43505 1.11183 1.03735 1.72218 1.19087 0.91684 0.84325 0.93791 1.20937 0.98118 0.93263 1.25715 1.20995 0.95109 0.95525 0.93958 1.21837 0.94210 0.98974 1.19797 1.18929 0.94709 0.86630 0.88708 1.19939 0.90000 0.95241 1.43977 0.89535 1.27024 1.05278 0.94725 0.94338 1.70508 1.36508 0.99230 1.24501 0.85225 0.76655 0.79667 0.78542 1.18228 1.19273 1.19314 1.68688 1.10562 1.21240 1.21605 1.20947 0.88804 0.81952 0.72295 1.90785 1.43594 1.55763 1.48009 1.87389 1.31813 1.19985 1.84090 1.22653 0.75255 0.92387 1.02773 1.22131 1.06249 0.99531 0.92282 1.22147 1.06260 0.99716 0.92183 0.87226 0.90572 0.85707 0.74568 0.86399 0.84521 0.87294 0.91452 0.86195 0.88218 0.92382 0.92478 0.88153 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 9.78 71.24 0.70 -1.59 16 2 C 0.04 1.01 5.13 -17.11 -0.09 0.92 16 3 C -0.31 -10.55 6.16 -19.22 -0.12 -10.66 16 4 C 0.53 23.94 7.78 86.73 0.67 24.62 16 5 O -0.43 -21.82 10.36 -3.92 -0.04 -21.86 16 6 N -0.66 -31.09 5.37 -311.16 -1.67 -32.76 16 7 C 0.35 18.81 7.43 133.28 0.99 19.80 16 8 C -0.35 -17.29 9.95 22.72 0.23 -17.06 16 9 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 10 C -0.33 -17.07 9.83 22.87 0.22 -16.85 16 11 C 0.24 13.91 6.55 40.19 0.26 14.17 16 12 C -0.46 -26.17 9.14 23.47 0.21 -25.96 16 13 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 14 C 0.01 0.64 5.50 85.29 0.47 1.11 16 15 N -0.69 -37.96 8.98 21.84 0.20 -37.77 16 16 Si 0.98 39.23 29.56 68.60 2.03 41.26 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 20 N -0.50 -29.80 5.73 -186.40 -1.07 -30.87 16 21 C 0.51 17.26 8.53 70.17 0.60 17.86 16 22 O -0.49 -19.28 15.88 19.55 0.31 -18.97 16 23 O -0.32 -8.25 10.58 -54.26 -0.57 -8.83 16 24 C 0.11 1.82 1.39 -11.42 -0.02 1.81 16 25 C -0.15 -1.50 8.92 71.98 0.64 -0.86 16 26 C -0.15 -1.54 8.90 71.98 0.64 -0.90 16 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.25 6.34 -2.38 -0.02 2.24 16 29 H 0.12 1.24 7.50 -2.39 -0.02 1.23 16 30 H 0.42 18.01 6.40 -92.71 -0.59 17.42 16 31 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 32 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 34 H 0.27 13.75 8.29 -92.71 -0.77 12.98 16 35 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.12 0.52 7.53 -2.39 -0.02 0.50 16 Total: -1.00 -78.77 339.84 5.32 -73.44 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.50 Total: 31.23 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.65 Total: 5.12 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -2.54 Total: -101.40 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.30 Total: -49.65 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -78.77 5.32 -73.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.444 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds