Wall clock time and date at job start Tue Mar 31 2020 11:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99983 * 2 1 4 4 C 1.52997 * 109.47530 * 124.99691 * 3 2 1 5 5 C 1.52994 * 109.47544 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.53644 * 52.17006 * 5 4 3 7 7 N 1.47314 * 110.73156 * 289.25328 * 5 4 3 8 8 C 1.34530 * 106.61875 * 241.40443 * 7 5 4 9 9 O 1.21530 * 123.77172 * 180.26077 * 8 7 5 10 10 N 1.33794 * 112.45829 * 0.02562 * 8 7 5 11 11 C 1.40254 * 124.18138 * 179.97438 * 10 8 7 12 12 C 1.38870 * 119.99952 * 173.60857 * 11 10 8 13 13 C 1.38015 * 120.00333 * 179.72505 * 12 11 10 14 14 C 1.38901 * 119.99463 * 0.54540 * 13 12 11 15 15 O 1.35776 * 120.00540 * 179.70323 * 14 13 12 16 16 C 1.34807 * 117.00210 * 185.77576 * 15 14 13 17 17 H 1.07997 * 120.00298 * 5.38040 * 16 15 14 18 18 C 1.38634 * 120.00066 * 185.38568 * 16 15 14 19 19 N 1.31571 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46796 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47121 * 120.00085 * 20 18 16 23 23 H 1.48500 * 109.47144 * 239.99956 * 20 18 16 24 24 C 1.38905 * 119.99594 * 359.72934 * 14 13 12 25 25 C 1.38010 * 119.99702 * 359.97438 * 24 14 13 26 26 C 1.34773 * 111.64512 * 359.97438 * 10 8 7 27 27 O 1.21241 * 127.16114 * 180.02562 * 26 10 8 28 28 H 1.07998 * 120.00241 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00178 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00403 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47355 * 4.99468 * 3 2 1 32 32 H 1.09004 * 109.47192 * 244.99619 * 3 2 1 33 33 H 1.09004 * 109.47235 * 59.99918 * 4 3 2 34 34 H 1.08999 * 109.47278 * 300.00155 * 4 3 2 35 35 H 0.96993 * 126.69185 * 61.44485 * 7 5 4 36 36 H 1.08004 * 120.00234 * 359.97345 * 12 11 10 37 37 H 1.07999 * 120.00238 * 180.27355 * 13 12 11 38 38 H 0.97004 * 120.00425 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.00609 * 179.97438 * 24 14 13 40 40 H 1.07990 * 120.00499 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6579 1.1812 6 1 3.1089 3.4990 1.1306 7 7 4.7582 2.7064 0.0631 8 6 5.9820 2.8232 0.6096 9 8 7.0073 2.8950 -0.0388 10 7 5.9436 2.8566 1.9465 11 6 7.0769 2.9728 2.7647 12 6 6.9296 3.1325 4.1363 13 6 8.0448 3.2412 4.9421 14 6 9.3143 3.2021 4.3798 15 8 10.4114 3.3150 5.1717 16 6 11.6072 3.3898 4.5537 17 1 11.6557 3.4466 3.4764 18 6 12.7747 3.3938 5.3013 19 7 12.7157 3.3251 6.6139 20 14 14.4318 3.4967 4.4450 21 1 14.2264 3.5633 2.9758 22 1 15.1496 4.7142 4.9007 23 1 15.2365 2.2939 4.7779 24 6 9.4614 3.0481 3.0072 25 6 8.3462 2.9333 2.2023 26 6 4.6814 2.7648 2.4101 27 8 4.3248 2.7674 3.5689 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4772 1.2357 2.1130 35 1 4.5476 2.6632 -0.8827 36 1 5.9424 3.1677 4.5730 37 1 7.9303 3.3609 6.0093 38 1 13.5326 3.3282 7.1370 39 1 10.4483 3.0181 2.5698 40 1 8.4604 2.8132 1.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325290147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:46 Heat of formation + Delta-G solvation = -13.821127 kcal Electronic energy + Delta-G solvation = -25323.988828 eV Core-core repulsion = 21492.522252 eV Total energy + Delta-G solvation = -3831.466576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.73973 -39.01538 -38.74215 -37.36444 -36.40696 -35.74790 -34.11561 -32.25771 -31.31532 -30.23530 -28.59887 -27.07566 -25.42949 -23.84402 -23.02467 -22.23653 -21.11624 -20.51693 -20.06675 -18.44995 -17.85342 -17.18285 -16.95164 -16.69670 -16.06279 -15.92739 -15.33090 -15.08784 -14.58889 -14.35253 -14.31030 -14.13508 -13.72589 -13.65453 -13.52652 -12.92331 -12.74520 -12.71593 -12.51120 -12.01537 -11.88005 -11.71366 -11.50779 -11.47097 -11.11303 -10.98126 -10.47366 -10.38224 -10.11946 -9.96558 -9.80683 -9.68068 -9.24365 -8.80041 -8.26943 -7.08094 -6.48623 -4.05956 1.43814 1.84612 2.04078 2.16240 2.17173 2.93694 3.07531 3.13943 3.19394 3.19733 3.73592 3.95074 4.11837 4.33665 4.53775 4.65749 4.74333 4.80796 4.93872 5.07641 5.11454 5.24229 5.24722 5.41277 5.50224 5.53769 5.67408 5.73647 5.77576 6.14203 6.19181 6.21742 6.31332 6.56450 6.67148 6.78215 6.86754 6.96314 7.21984 7.32426 7.33378 7.46813 7.70584 7.96384 8.10015 8.96841 9.65109 10.68938 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.002559 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.314733 B =10939.401488 C =11467.107689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.116 4.116 5 C 0.096 3.904 6 H 0.129 0.871 7 N -0.726 5.726 8 C 0.701 3.299 9 O -0.530 6.530 10 N -0.498 5.498 11 C 0.014 3.986 12 C -0.084 4.084 13 C -0.178 4.178 14 C 0.152 3.848 15 O -0.172 6.172 16 C -0.391 4.391 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.220 4.220 25 C -0.078 4.078 26 C 0.517 3.483 27 O -0.459 6.459 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.438 0.562 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.135 0.865 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.448 -3.406 -13.746 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.173 4.173 3 C -0.129 4.129 4 C -0.154 4.154 5 C -0.013 4.013 6 H 0.146 0.854 7 N -0.392 5.392 8 C 0.402 3.598 9 O -0.404 6.404 10 N -0.236 5.236 11 C -0.076 4.076 12 C -0.103 4.103 13 C -0.198 4.198 14 C 0.097 3.903 15 O -0.074 6.074 16 C -0.467 4.467 17 H 0.112 0.888 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.240 4.240 25 C -0.097 4.097 26 C 0.305 3.695 27 O -0.329 6.329 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.283 0.717 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.815 -3.340 -12.938 24.735 hybrid contribution 0.701 -0.030 -0.895 1.137 sum -20.114 -3.371 -13.833 24.644 Atomic orbital electron populations 1.23888 0.95942 1.01998 1.00957 1.22897 0.96042 0.98352 1.00028 1.20748 0.97857 0.96174 0.98103 1.21782 0.98287 0.94664 1.00706 1.22125 0.92508 1.02118 0.84582 0.85395 1.45550 1.05287 1.79215 1.09104 1.15838 0.84694 0.77922 0.81355 1.90899 1.31272 1.54360 1.63852 1.43458 1.08509 1.64431 1.07166 1.17289 0.83858 1.16914 0.89506 1.20896 0.99644 0.99132 0.90647 1.20060 0.89260 1.10651 0.99852 1.19528 0.88498 0.92240 0.90025 1.83993 1.12410 1.77548 1.33461 1.21413 0.80367 1.52139 0.92772 0.88831 1.25323 0.99171 0.96432 0.95623 1.70055 1.29137 1.45544 1.04620 0.85626 0.80248 0.78280 0.79187 1.18964 1.20091 1.20096 1.21099 0.99008 1.10593 0.93308 1.21295 0.89745 0.97281 1.01380 1.20768 0.82740 0.75740 0.90284 1.90724 1.78030 1.45966 1.18168 0.88454 0.88491 0.87215 0.90812 0.90730 0.90225 0.88851 0.71698 0.84114 0.85637 0.91962 0.84768 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.98 14.32 29.02 0.42 -0.56 16 2 C -0.16 -0.84 9.52 -36.03 -0.34 -1.18 16 3 C -0.09 -0.41 5.60 -27.89 -0.16 -0.57 16 4 C -0.12 -0.73 4.94 -26.74 -0.13 -0.86 16 5 C 0.10 0.74 3.64 -68.20 -0.25 0.50 16 6 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 7 N -0.73 -6.20 6.07 -59.19 -0.36 -6.56 16 8 C 0.70 9.85 8.54 -88.01 -0.75 9.10 16 9 O -0.53 -9.16 14.66 5.34 0.08 -9.08 16 10 N -0.50 -7.74 2.83 -64.30 -0.18 -7.92 16 11 C 0.01 0.26 6.56 -83.53 -0.55 -0.29 16 12 C -0.08 -1.64 9.31 -39.43 -0.37 -2.00 16 13 C -0.18 -3.88 9.99 -39.42 -0.39 -4.28 16 14 C 0.15 3.72 6.65 -39.09 -0.26 3.47 16 15 O -0.17 -4.89 9.75 0.03 0.00 -4.89 16 16 C -0.39 -10.92 9.44 30.88 0.29 -10.63 16 17 H 0.09 2.43 5.29 -52.49 -0.28 2.15 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 20 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.22 -4.98 9.13 -39.42 -0.36 -5.34 16 25 C -0.08 -1.59 9.25 -39.42 -0.36 -1.96 16 26 C 0.52 6.73 7.52 -10.55 -0.08 6.65 16 27 O -0.46 -6.96 15.06 5.59 0.08 -6.87 16 28 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 29 H 0.10 0.43 7.84 -52.48 -0.41 0.02 16 30 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.14 16 32 H 0.07 0.28 7.69 -51.93 -0.40 -0.12 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.44 2.46 8.62 -40.82 -0.35 2.11 16 36 H 0.14 2.58 5.36 -52.48 -0.28 2.29 16 37 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 3.01 5.71 -52.49 -0.30 2.71 16 40 H 0.15 2.94 5.18 -52.49 -0.27 2.66 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -33.33 343.19 -7.23 -40.56 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.37 Total: 5.38 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.39 Total: -6.97 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.22 Total: -38.82 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.16 Total: -20.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.33 -7.23 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325290147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.741 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds