Wall clock time and date at job start Tue Mar 31 2020 11:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99983 * 2 1 4 4 C 1.52997 * 109.47530 * 124.99691 * 3 2 1 5 5 C 1.52994 * 109.47544 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.53644 * 52.17006 * 5 4 3 7 7 N 1.47314 * 110.73156 * 289.25328 * 5 4 3 8 8 C 1.34530 * 106.61875 * 241.40443 * 7 5 4 9 9 O 1.21530 * 123.77172 * 180.26077 * 8 7 5 10 10 N 1.33794 * 112.45829 * 0.02562 * 8 7 5 11 11 C 1.40254 * 124.18138 * 179.97438 * 10 8 7 12 12 C 1.38870 * 119.99952 * 173.60857 * 11 10 8 13 13 C 1.38015 * 120.00333 * 179.72505 * 12 11 10 14 14 C 1.38901 * 119.99463 * 0.54540 * 13 12 11 15 15 O 1.35776 * 120.00540 * 179.70323 * 14 13 12 16 16 C 1.34807 * 117.00210 * 185.77576 * 15 14 13 17 17 H 1.07997 * 120.00298 * 5.38040 * 16 15 14 18 18 C 1.38634 * 120.00066 * 185.38568 * 16 15 14 19 19 N 1.31571 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46796 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47121 * 120.00085 * 20 18 16 23 23 H 1.48500 * 109.47144 * 239.99956 * 20 18 16 24 24 C 1.38905 * 119.99594 * 359.72934 * 14 13 12 25 25 C 1.38010 * 119.99702 * 359.97438 * 24 14 13 26 26 C 1.34773 * 111.64512 * 359.97438 * 10 8 7 27 27 O 1.21241 * 127.16114 * 180.02562 * 26 10 8 28 28 H 1.07998 * 120.00241 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00178 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00403 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47355 * 4.99468 * 3 2 1 32 32 H 1.09004 * 109.47192 * 244.99619 * 3 2 1 33 33 H 1.09004 * 109.47235 * 59.99918 * 4 3 2 34 34 H 1.08999 * 109.47278 * 300.00155 * 4 3 2 35 35 H 0.96993 * 126.69185 * 61.44485 * 7 5 4 36 36 H 1.08004 * 120.00234 * 359.97345 * 12 11 10 37 37 H 1.07999 * 120.00238 * 180.27355 * 13 12 11 38 38 H 0.97004 * 120.00425 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.00609 * 179.97438 * 24 14 13 40 40 H 1.07990 * 120.00499 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6579 1.1812 6 1 3.1089 3.4990 1.1306 7 7 4.7582 2.7064 0.0631 8 6 5.9820 2.8232 0.6096 9 8 7.0073 2.8950 -0.0388 10 7 5.9436 2.8566 1.9465 11 6 7.0769 2.9728 2.7647 12 6 6.9296 3.1325 4.1363 13 6 8.0448 3.2412 4.9421 14 6 9.3143 3.2021 4.3798 15 8 10.4114 3.3150 5.1717 16 6 11.6072 3.3898 4.5537 17 1 11.6557 3.4466 3.4764 18 6 12.7747 3.3938 5.3013 19 7 12.7157 3.3251 6.6139 20 14 14.4318 3.4967 4.4450 21 1 14.2264 3.5633 2.9758 22 1 15.1496 4.7142 4.9007 23 1 15.2365 2.2939 4.7779 24 6 9.4614 3.0481 3.0072 25 6 8.3462 2.9333 2.2023 26 6 4.6814 2.7648 2.4101 27 8 4.3248 2.7674 3.5689 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4772 1.2357 2.1130 35 1 4.5476 2.6632 -0.8827 36 1 5.9424 3.1677 4.5730 37 1 7.9303 3.3609 6.0093 38 1 13.5326 3.3282 7.1370 39 1 10.4483 3.0181 2.5698 40 1 8.4604 2.8132 1.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325290147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:45 Heat of formation + Delta-G solvation = -36.018251 kcal Electronic energy + Delta-G solvation = -25324.951367 eV Core-core repulsion = 21492.522252 eV Total energy + Delta-G solvation = -3832.429116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.85072 -40.79340 -39.89445 -38.67859 -37.66503 -36.61003 -35.22181 -34.21296 -32.08116 -31.83328 -30.14157 -27.92823 -27.32342 -25.04647 -24.28400 -23.47437 -22.26197 -21.76567 -20.57188 -20.06769 -19.28450 -18.76492 -18.20496 -17.93514 -17.15397 -16.78121 -16.42706 -16.12830 -16.04863 -15.83788 -15.61222 -15.37610 -15.24020 -14.85211 -14.72563 -14.34186 -14.18600 -13.74950 -13.57964 -13.56780 -13.11359 -13.04419 -12.79571 -12.67733 -12.11269 -11.92189 -11.86369 -11.75466 -11.67044 -11.41852 -10.85267 -10.76412 -10.57220 -10.13862 -9.99203 -8.84514 -8.50248 -6.17553 0.24859 0.40234 0.55175 1.04480 1.35697 1.42485 1.46909 1.54062 1.91721 2.09773 2.16319 2.75406 2.80807 3.09700 3.40955 3.51825 3.73097 3.97603 4.03560 4.08404 4.19315 4.26309 4.35731 4.37694 4.42549 4.55777 4.64996 4.84574 4.97409 5.01332 5.05114 5.15171 5.17423 5.27085 5.28345 5.37104 5.56444 5.81260 5.84563 5.95091 5.95146 5.97193 6.05165 6.31093 6.93852 7.02648 7.70116 8.72415 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.002559 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.314733 B =10939.401488 C =11467.107689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C -0.086 4.086 4 C -0.110 4.110 5 C 0.114 3.886 6 H 0.172 0.828 7 N -0.693 5.693 8 C 0.696 3.304 9 O -0.566 6.566 10 N -0.514 5.514 11 C 0.040 3.960 12 C -0.080 4.080 13 C -0.179 4.179 14 C 0.119 3.881 15 O -0.221 6.221 16 C -0.414 4.414 17 H 0.102 0.898 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.019 2.981 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.221 4.221 25 C -0.082 4.082 26 C 0.512 3.488 27 O -0.480 6.480 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.457 0.543 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.274 0.726 39 H 0.130 0.870 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.173 -3.333 -16.494 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.185 4.185 3 C -0.123 4.123 4 C -0.148 4.148 5 C 0.006 3.994 6 H 0.189 0.811 7 N -0.360 5.360 8 C 0.397 3.603 9 O -0.443 6.443 10 N -0.252 5.252 11 C -0.051 4.051 12 C -0.099 4.099 13 C -0.199 4.199 14 C 0.067 3.933 15 O -0.126 6.126 16 C -0.490 4.490 17 H 0.120 0.880 18 C -0.218 4.218 19 N -0.553 5.553 20 Si 0.838 3.162 21 H -0.176 1.176 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.241 4.241 25 C -0.102 4.102 26 C 0.301 3.699 27 O -0.351 6.351 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.305 0.695 36 H 0.177 0.823 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.663 -3.280 -15.755 28.617 hybrid contribution 1.102 -0.112 -0.169 1.120 sum -22.562 -3.393 -15.924 27.823 Atomic orbital electron populations 1.24040 0.96053 1.02572 1.00465 1.22992 0.96265 0.98754 1.00485 1.20740 0.97701 0.96274 0.97579 1.21769 0.98210 0.93041 1.01820 1.22323 0.91380 1.04730 0.80971 0.81072 1.45406 1.03300 1.77018 1.10230 1.15979 0.85753 0.77901 0.80669 1.90873 1.32986 1.56177 1.64232 1.43664 1.08346 1.65337 1.07824 1.17412 0.85040 1.12719 0.89907 1.21066 0.99598 0.98485 0.90782 1.20287 0.89027 1.09972 1.00597 1.19939 0.88612 0.93911 0.90826 1.83963 1.13309 1.80511 1.34845 1.21865 0.80896 1.52858 0.93416 0.88042 1.26596 1.03184 0.95688 0.96364 1.70187 1.30440 1.48183 1.06491 0.84522 0.74548 0.78638 0.78465 1.17584 1.19199 1.19222 1.21156 0.99724 1.10332 0.92865 1.21404 0.89766 0.97402 1.01596 1.21712 0.82343 0.74242 0.91576 1.90711 1.78133 1.46577 1.19688 0.88435 0.87556 0.87714 0.89060 0.89473 0.91220 0.88757 0.69453 0.82299 0.85167 0.91658 0.85246 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 14.32 67.79 0.97 -0.49 16 2 C -0.17 -1.30 9.52 25.65 0.24 -1.05 16 3 C -0.09 -0.39 5.60 29.85 0.17 -0.23 16 4 C -0.11 -0.93 4.94 30.59 0.15 -0.78 16 5 C 0.11 1.24 3.64 44.37 0.16 1.41 16 6 H 0.17 0.67 8.14 -2.39 -0.02 0.66 16 7 N -0.69 -8.93 6.07 -459.61 -2.79 -11.72 16 8 C 0.70 17.71 8.54 179.44 1.53 19.25 16 9 O -0.57 -18.58 14.66 -3.81 -0.06 -18.63 16 10 N -0.51 -14.79 2.83 -594.60 -1.68 -16.47 16 11 C 0.04 1.50 6.56 38.10 0.25 1.75 16 12 C -0.08 -3.07 9.31 22.37 0.21 -2.87 16 13 C -0.18 -7.99 9.99 22.38 0.22 -7.76 16 14 C 0.12 6.08 6.65 22.59 0.15 6.23 16 15 O -0.22 -13.34 9.75 -22.80 -0.22 -13.56 16 16 C -0.41 -24.29 9.44 67.91 0.64 -23.65 16 17 H 0.10 5.51 5.29 -2.91 -0.02 5.49 16 18 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 19 N -0.92 -56.08 13.67 21.61 0.30 -55.79 16 20 Si 1.02 43.17 29.55 68.60 2.03 45.19 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.22 -10.30 9.13 22.38 0.20 -10.10 16 25 C -0.08 -3.36 9.25 22.37 0.21 -3.16 16 26 C 0.51 11.71 7.52 87.94 0.66 12.38 16 27 O -0.48 -13.31 15.06 -2.91 -0.04 -13.35 16 28 H 0.10 0.69 8.06 -2.91 -0.02 0.67 16 29 H 0.11 0.58 7.84 -2.91 -0.02 0.56 16 30 H 0.10 0.89 8.06 -2.91 -0.02 0.87 16 31 H 0.09 0.16 7.79 -2.39 -0.02 0.14 16 32 H 0.09 0.21 7.69 -2.38 -0.02 0.19 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.46 2.93 8.62 -92.71 -0.80 2.13 16 36 H 0.16 5.59 5.36 -2.91 -0.02 5.57 16 37 H 0.13 5.57 8.06 -2.91 -0.02 5.55 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.13 6.05 5.71 -2.91 -0.02 6.04 16 40 H 0.16 6.17 5.18 -2.92 -0.02 6.16 16 Total: -1.00 -77.49 343.19 4.06 -73.42 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.30 Total: 20.67 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 6.24 Total: -9.76 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -4.18 Total: -83.98 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.32 Total: -45.55 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -77.49 4.06 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325290147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds