Wall clock time and date at job start Tue Mar 31 2020 12:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.53182 * 2 1 4 4 C 1.51580 * 110.43347 * 123.09508 * 2 1 3 5 5 O 1.21239 * 127.15789 * 298.69013 * 4 2 1 6 6 N 1.34767 * 105.68719 * 118.76709 * 4 2 1 7 7 C 1.40257 * 124.18176 * 179.97438 * 6 4 2 8 8 C 1.38879 * 120.00105 * 185.81959 * 7 6 4 9 9 C 1.37999 * 120.00740 * 179.97438 * 8 7 6 10 10 C 1.38914 * 119.99295 * 0.02562 * 9 8 7 11 11 O 1.35773 * 120.00074 * 179.97438 * 10 9 8 12 12 C 1.34822 * 117.00226 * 5.45521 * 11 10 9 13 13 H 1.08007 * 119.99654 * 354.94573 * 12 11 10 14 14 C 1.38629 * 120.00116 * 174.95496 * 12 11 10 15 15 N 1.31571 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47401 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47124 * 299.99509 * 16 14 12 19 19 H 1.48500 * 109.47318 * 59.99648 * 16 14 12 20 20 C 1.38900 * 119.99624 * 0.27235 * 10 9 8 21 21 C 1.38016 * 119.99522 * 359.44868 * 20 10 9 22 22 C 1.33794 * 111.64222 * 359.65859 * 6 4 2 23 23 O 1.21536 * 123.77067 * 180.22765 * 22 6 4 24 24 N 1.34528 * 112.45628 * 0.22937 * 22 6 4 25 25 C 1.46501 * 126.68925 * 179.97438 * 24 22 6 26 26 C 1.53003 * 117.49605 * 8.65169 * 25 24 22 27 27 C 1.52997 * 117.50080 * 300.02957 * 25 24 22 28 28 H 1.08999 * 109.47149 * 182.83380 * 1 2 3 29 29 H 1.08999 * 109.47332 * 302.82794 * 1 2 3 30 30 H 1.08999 * 109.47263 * 62.82839 * 1 2 3 31 31 H 1.07995 * 119.99210 * 0.02562 * 8 7 6 32 32 H 1.07998 * 120.00684 * 179.97438 * 9 8 7 33 33 H 0.97000 * 119.99840 * 0.02562 * 15 14 12 34 34 H 1.07997 * 120.00762 * 179.70100 * 20 10 9 35 35 H 1.07996 * 119.99694 * 180.27281 * 21 20 10 36 36 H 1.08995 * 115.54840 * 154.35200 * 25 24 22 37 37 H 1.08997 * 117.50147 * 359.97438 * 26 25 24 38 38 H 1.09003 * 117.49723 * 145.02165 * 26 25 24 39 39 H 1.08999 * 117.49895 * 214.97950 * 27 25 24 40 40 H 1.08996 * 117.50010 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0592 -0.7756 1.1900 5 8 1.8801 -0.5286 2.3634 6 7 2.7715 -1.7958 0.6724 7 6 3.4369 -2.7621 1.4410 8 6 4.2455 -3.7060 0.8215 9 6 4.9007 -4.6564 1.5777 10 6 4.7510 -4.6692 2.9587 11 8 5.3952 -5.6045 3.7028 12 6 6.2516 -6.4191 3.0543 13 1 6.3388 -6.3652 1.9791 14 6 7.0201 -7.3261 3.7675 15 7 6.9141 -7.3915 5.0773 16 14 8.2062 -8.4552 2.8689 17 1 8.9040 -9.3232 3.8514 18 1 7.4530 -9.3008 1.9081 19 1 9.2050 -7.6393 2.1328 20 6 3.9374 -3.7288 3.5777 21 6 3.2868 -2.7749 2.8217 22 6 2.7599 -1.7771 -0.6654 23 8 3.3287 -2.5984 -1.3575 24 7 2.0482 -0.7476 -1.1587 25 6 1.8314 -0.4312 -2.5726 26 6 2.2962 -1.4594 -3.6059 27 6 3.0662 -0.1489 -3.4308 28 1 -0.3633 -1.0264 0.0508 29 1 -0.3634 0.5571 0.8635 30 1 -0.3634 0.4693 -0.9142 31 1 4.3622 -3.6958 -0.2521 32 1 5.5292 -5.3908 1.0959 33 1 6.2979 -6.8054 5.5439 34 1 3.8170 -3.7416 4.6509 35 1 2.6577 -2.0411 3.3033 36 1 0.9248 0.1315 -2.7947 37 1 2.7637 -2.3710 -3.2337 38 1 1.6953 -1.5733 -4.5081 39 1 2.9718 0.5993 -4.2177 40 1 4.0399 -0.1982 -2.9433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343860582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:13 Heat of formation + Delta-G solvation = 6.748706 kcal Electronic energy + Delta-G solvation = -26117.056941 eV Core-core repulsion = 22286.482339 eV Total energy + Delta-G solvation = -3830.574601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81044 -39.27520 -38.95230 -37.66517 -36.43001 -36.31494 -34.05622 -32.23129 -30.70686 -30.28521 -28.57651 -25.44746 -24.75367 -24.22642 -22.88029 -22.45577 -21.75456 -20.93419 -19.90426 -18.60634 -17.94901 -17.27716 -16.75243 -16.50796 -16.35150 -15.81632 -14.89209 -14.85667 -14.78557 -14.28865 -14.08500 -13.87012 -13.77295 -13.67977 -13.38141 -13.22252 -12.89203 -12.56450 -12.43659 -12.22475 -11.94275 -11.75137 -11.48536 -11.29848 -10.95308 -10.81939 -10.56743 -10.30868 -10.23297 -10.15808 -9.83604 -9.28360 -9.05490 -8.73405 -8.34538 -7.15873 -6.81183 -4.09209 1.41810 1.85129 1.96580 2.08602 2.68611 3.01517 3.23905 3.29140 3.45153 3.53285 3.73364 4.09547 4.25797 4.42314 4.46231 4.50706 4.58632 4.69265 4.90352 5.03606 5.11046 5.15846 5.23937 5.37249 5.38529 5.47390 5.60049 5.64035 5.67223 5.81427 6.00588 6.10698 6.19775 6.31008 6.58275 6.75524 6.79470 6.89269 7.22168 7.29080 7.33296 7.53637 7.59678 8.03273 8.35425 8.86896 9.54233 10.62636 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.003281 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.232825 B = 8532.950967 C = 9742.573088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.096 3.904 3 H 0.128 0.872 4 C 0.518 3.482 5 O -0.459 6.459 6 N -0.499 5.499 7 C 0.017 3.983 8 C -0.077 4.077 9 C -0.216 4.216 10 C 0.154 3.846 11 O -0.196 6.196 12 C -0.472 4.472 13 H 0.086 0.914 14 C 0.011 3.989 15 N -0.878 5.878 16 Si 1.096 2.904 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.181 4.181 21 C -0.084 4.084 22 C 0.701 3.299 23 O -0.527 6.527 24 N -0.598 5.598 25 C 0.103 3.897 26 C -0.183 4.183 27 C -0.190 4.190 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.283 0.717 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 16.462 -15.326 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 H 0.146 0.854 4 C 0.305 3.695 5 O -0.330 6.330 6 N -0.236 5.236 7 C -0.072 4.072 8 C -0.097 4.097 9 C -0.236 4.236 10 C 0.100 3.900 11 O -0.100 6.100 12 C -0.548 4.548 13 H 0.103 0.897 14 C -0.194 4.194 15 N -0.509 5.509 16 Si 0.919 3.081 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.200 4.200 21 C -0.104 4.104 22 C 0.404 3.596 23 O -0.401 6.401 24 N -0.336 5.336 25 C 0.000 4.000 26 C -0.221 4.221 27 C -0.229 4.229 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.821 14.834 -14.627 23.476 hybrid contribution -1.134 1.368 -0.362 1.814 sum -11.955 16.202 -14.989 25.102 Atomic orbital electron populations 1.21933 0.90577 1.04037 1.04118 1.22113 0.97823 0.98070 0.83123 0.85435 1.20791 0.77977 0.80669 0.90023 1.90717 1.56802 1.69109 1.16328 1.43533 1.46417 1.26541 1.07098 1.17310 1.04588 0.95228 0.90106 1.21311 0.94084 0.92828 1.01450 1.21103 1.06319 1.02815 0.93386 1.19360 0.91813 0.88448 0.90353 1.83666 1.50474 1.39226 1.36591 1.22260 1.20632 1.17862 0.94004 0.89667 1.26579 0.98668 0.97778 0.96424 1.70581 1.35190 1.37605 1.07514 0.83111 0.74979 0.75326 0.74651 1.19735 1.20618 1.20639 1.20041 1.03189 0.97129 0.99686 1.20902 0.99608 0.98922 0.90921 1.15856 0.80186 0.82246 0.81303 1.90763 1.48045 1.40983 1.60290 1.47056 1.53448 1.27938 1.05129 1.21358 0.98796 1.05020 0.74836 1.23731 1.03109 0.96298 0.98928 1.23448 0.96977 0.99976 1.02469 0.91367 0.89595 0.90382 0.83382 0.84667 0.90712 0.85789 0.84027 0.84482 0.85174 0.88038 0.87868 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.45 37.16 0.35 -0.60 16 2 C 0.10 0.85 4.06 -68.21 -0.28 0.58 16 3 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.52 7.10 7.51 -10.56 -0.08 7.02 16 5 O -0.46 -7.18 15.05 5.59 0.08 -7.10 16 6 N -0.50 -8.08 2.83 -64.30 -0.18 -8.27 16 7 C 0.02 0.33 6.56 -83.53 -0.55 -0.22 16 8 C -0.08 -1.60 9.25 -39.43 -0.36 -1.97 16 9 C -0.22 -4.97 9.16 -39.42 -0.36 -5.33 16 10 C 0.15 3.82 6.65 -39.09 -0.26 3.56 16 11 O -0.20 -5.56 9.16 0.00 0.00 -5.56 16 12 C -0.47 -13.36 9.48 30.88 0.29 -13.07 16 13 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 14 C 0.01 0.32 5.49 -17.52 -0.10 0.22 16 15 N -0.88 -26.23 13.70 55.48 0.76 -25.47 16 16 Si 1.10 23.78 29.92 -169.99 -5.09 18.69 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.18 -3.94 9.99 -39.42 -0.39 -4.34 16 21 C -0.08 -1.66 9.31 -39.42 -0.37 -2.03 16 22 C 0.70 10.45 8.13 -88.02 -0.72 9.73 16 23 O -0.53 -9.00 11.55 5.33 0.06 -8.94 16 24 N -0.60 -6.28 3.07 -164.84 -0.51 -6.79 16 25 C 0.10 0.80 6.82 -67.93 -0.46 0.33 16 26 C -0.18 -1.61 9.83 -26.73 -0.26 -1.88 16 27 C -0.19 -1.49 10.40 -26.73 -0.28 -1.76 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.32 7.77 -51.93 -0.40 -0.09 16 31 H 0.15 2.97 5.18 -52.49 -0.27 2.70 16 32 H 0.14 3.11 5.63 -52.49 -0.30 2.81 16 33 H 0.28 8.63 7.97 -40.82 -0.33 8.30 16 34 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 35 H 0.14 2.63 5.35 -52.49 -0.28 2.35 16 36 H 0.14 0.62 7.78 -51.93 -0.40 0.21 16 37 H 0.13 1.60 5.50 -51.93 -0.29 1.32 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -33.10 335.98 -7.92 -41.02 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.29 Total: 7.09 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.82 Total: -9.74 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.07 Total: -40.52 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.15 Total: -21.60 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.09 Total: 18.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.10 -7.92 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343860582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.768 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds