Wall clock time and date at job start Tue Mar 31 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.53182 * 2 1 4 4 C 1.51580 * 110.43347 * 123.09508 * 2 1 3 5 5 O 1.21239 * 127.15789 * 298.69013 * 4 2 1 6 6 N 1.34767 * 105.68719 * 118.76709 * 4 2 1 7 7 C 1.40257 * 124.18176 * 179.97438 * 6 4 2 8 8 C 1.38879 * 120.00105 * 185.81959 * 7 6 4 9 9 C 1.37999 * 120.00740 * 179.97438 * 8 7 6 10 10 C 1.38914 * 119.99295 * 0.02562 * 9 8 7 11 11 O 1.35773 * 120.00074 * 179.97438 * 10 9 8 12 12 C 1.34822 * 117.00226 * 5.45521 * 11 10 9 13 13 H 1.08007 * 119.99654 * 354.94573 * 12 11 10 14 14 C 1.38629 * 120.00116 * 174.95496 * 12 11 10 15 15 N 1.31571 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47401 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47124 * 299.99509 * 16 14 12 19 19 H 1.48500 * 109.47318 * 59.99648 * 16 14 12 20 20 C 1.38900 * 119.99624 * 0.27235 * 10 9 8 21 21 C 1.38016 * 119.99522 * 359.44868 * 20 10 9 22 22 C 1.33794 * 111.64222 * 359.65859 * 6 4 2 23 23 O 1.21536 * 123.77067 * 180.22765 * 22 6 4 24 24 N 1.34528 * 112.45628 * 0.22937 * 22 6 4 25 25 C 1.46501 * 126.68925 * 179.97438 * 24 22 6 26 26 C 1.53003 * 117.49605 * 8.65169 * 25 24 22 27 27 C 1.52997 * 117.50080 * 300.02957 * 25 24 22 28 28 H 1.08999 * 109.47149 * 182.83380 * 1 2 3 29 29 H 1.08999 * 109.47332 * 302.82794 * 1 2 3 30 30 H 1.08999 * 109.47263 * 62.82839 * 1 2 3 31 31 H 1.07995 * 119.99210 * 0.02562 * 8 7 6 32 32 H 1.07998 * 120.00684 * 179.97438 * 9 8 7 33 33 H 0.97000 * 119.99840 * 0.02562 * 15 14 12 34 34 H 1.07997 * 120.00762 * 179.70100 * 20 10 9 35 35 H 1.07996 * 119.99694 * 180.27281 * 21 20 10 36 36 H 1.08995 * 115.54840 * 154.35200 * 25 24 22 37 37 H 1.08997 * 117.50147 * 359.97438 * 26 25 24 38 38 H 1.09003 * 117.49723 * 145.02165 * 26 25 24 39 39 H 1.08999 * 117.49895 * 214.97950 * 27 25 24 40 40 H 1.08996 * 117.50010 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0592 -0.7756 1.1900 5 8 1.8801 -0.5286 2.3634 6 7 2.7715 -1.7958 0.6724 7 6 3.4369 -2.7621 1.4410 8 6 4.2455 -3.7060 0.8215 9 6 4.9007 -4.6564 1.5777 10 6 4.7510 -4.6692 2.9587 11 8 5.3952 -5.6045 3.7028 12 6 6.2516 -6.4191 3.0543 13 1 6.3388 -6.3652 1.9791 14 6 7.0201 -7.3261 3.7675 15 7 6.9141 -7.3915 5.0773 16 14 8.2062 -8.4552 2.8689 17 1 8.9040 -9.3232 3.8514 18 1 7.4530 -9.3008 1.9081 19 1 9.2050 -7.6393 2.1328 20 6 3.9374 -3.7288 3.5777 21 6 3.2868 -2.7749 2.8217 22 6 2.7599 -1.7771 -0.6654 23 8 3.3287 -2.5984 -1.3575 24 7 2.0482 -0.7476 -1.1587 25 6 1.8314 -0.4312 -2.5726 26 6 2.2962 -1.4594 -3.6059 27 6 3.0662 -0.1489 -3.4308 28 1 -0.3633 -1.0264 0.0508 29 1 -0.3634 0.5571 0.8635 30 1 -0.3634 0.4693 -0.9142 31 1 4.3622 -3.6958 -0.2521 32 1 5.5292 -5.3908 1.0959 33 1 6.2979 -6.8054 5.5439 34 1 3.8170 -3.7416 4.6509 35 1 2.6577 -2.0411 3.3033 36 1 0.9248 0.1315 -2.7947 37 1 2.7637 -2.3710 -3.2337 38 1 1.6953 -1.5733 -4.5081 39 1 2.9718 0.5993 -4.2177 40 1 4.0399 -0.1982 -2.9433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343860582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:12 Heat of formation + Delta-G solvation = -13.763346 kcal Electronic energy + Delta-G solvation = -26117.946410 eV Core-core repulsion = 22286.482339 eV Total energy + Delta-G solvation = -3831.464071 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.94398 -40.97834 -40.17929 -38.97352 -37.77746 -37.42121 -35.26226 -34.22134 -32.12729 -31.41458 -30.15757 -27.19120 -26.02214 -25.40503 -24.12618 -23.29260 -23.15029 -22.22185 -21.00147 -20.45198 -19.30633 -18.67019 -18.29198 -17.64621 -17.28423 -17.05182 -16.71164 -15.97431 -15.84080 -15.70220 -15.56822 -15.38567 -15.17180 -15.10565 -14.58535 -14.48243 -14.12923 -13.92385 -13.52148 -13.40465 -13.02612 -12.91261 -12.63064 -12.58017 -12.29400 -12.17785 -11.94166 -11.72330 -11.57302 -11.56148 -11.30187 -10.80210 -10.72592 -10.11084 -9.86594 -9.00423 -8.94310 -6.29270 0.15007 0.28656 0.46958 0.80267 1.47997 1.58556 1.72442 1.78185 1.80024 2.32008 2.68823 2.74883 2.88390 3.03164 3.20834 3.47045 3.80375 3.85302 3.92249 3.95793 3.96160 3.98313 4.11731 4.14336 4.28317 4.45479 4.67296 4.76743 4.80012 4.83429 4.88198 5.01928 5.06323 5.12160 5.16481 5.22856 5.29323 5.38706 5.48230 5.56107 5.78842 6.03472 6.16212 6.21207 6.79665 6.86155 7.51368 8.45321 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.003281 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.232825 B = 8532.950967 C = 9742.573088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.109 3.891 3 H 0.168 0.832 4 C 0.511 3.489 5 O -0.480 6.480 6 N -0.516 5.516 7 C 0.044 3.956 8 C -0.083 4.083 9 C -0.218 4.218 10 C 0.121 3.879 11 O -0.240 6.240 12 C -0.492 4.492 13 H 0.092 0.908 14 C -0.039 4.039 15 N -0.912 5.912 16 Si 1.144 2.856 17 H -0.271 1.271 18 H -0.260 1.260 19 H -0.261 1.261 20 C -0.178 4.178 21 C -0.081 4.081 22 C 0.689 3.311 23 O -0.557 6.557 24 N -0.584 5.584 25 C 0.105 3.895 26 C -0.199 4.199 27 C -0.184 4.184 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.187 0.813 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 19.742 -18.354 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.004 3.996 3 H 0.185 0.815 4 C 0.300 3.700 5 O -0.351 6.351 6 N -0.253 5.253 7 C -0.047 4.047 8 C -0.102 4.102 9 C -0.238 4.238 10 C 0.070 3.930 11 O -0.147 6.147 12 C -0.567 4.567 13 H 0.110 0.890 14 C -0.236 4.236 15 N -0.546 5.546 16 Si 0.959 3.041 17 H -0.196 1.196 18 H -0.184 1.184 19 H -0.185 1.185 20 C -0.197 4.197 21 C -0.100 4.100 22 C 0.392 3.608 23 O -0.434 6.434 24 N -0.320 5.320 25 C 0.004 3.996 26 C -0.237 4.237 27 C -0.222 4.222 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.178 0.822 36 H 0.204 0.796 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.111 18.213 -17.712 28.589 hybrid contribution -0.700 0.692 0.393 1.060 sum -13.812 18.905 -17.319 29.123 Atomic orbital electron populations 1.22013 0.87807 1.03723 1.06622 1.22396 0.99523 0.98204 0.79482 0.81525 1.21778 0.76863 0.80090 0.91225 1.90699 1.57256 1.69440 1.17730 1.43788 1.46950 1.26674 1.07897 1.17464 1.02238 0.94534 0.90457 1.21407 0.94284 0.92781 1.01723 1.21163 1.06404 1.03225 0.93011 1.19799 0.92825 0.89207 0.91161 1.83655 1.52325 1.41089 1.37597 1.22630 1.21149 1.18379 0.94567 0.89032 1.28400 0.99867 0.98959 0.96404 1.70712 1.36488 1.38722 1.08685 0.82605 0.73459 0.73936 0.74076 1.19575 1.18426 1.18521 1.20296 1.02275 0.96619 1.00535 1.21093 0.99326 0.98554 0.91076 1.16129 0.80774 0.83215 0.80650 1.90754 1.49523 1.42494 1.60586 1.47289 1.51668 1.26258 1.06787 1.21980 1.00483 1.04404 0.72691 1.23668 1.04280 0.95214 1.00514 1.23469 0.95662 1.00052 1.03019 0.92980 0.88445 0.86666 0.82601 0.85317 0.92933 0.84889 0.82154 0.79575 0.89183 0.85476 0.84651 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.45 71.98 0.68 -0.39 16 2 C 0.11 1.44 4.06 44.37 0.18 1.62 16 3 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.51 12.62 7.51 87.94 0.66 13.28 16 5 O -0.48 -13.86 15.05 -2.90 -0.04 -13.91 16 6 N -0.52 -15.93 2.83 -594.60 -1.68 -17.61 16 7 C 0.04 1.70 6.56 38.10 0.25 1.95 16 8 C -0.08 -3.48 9.25 22.37 0.21 -3.27 16 9 C -0.22 -10.43 9.16 22.38 0.20 -10.23 16 10 C 0.12 6.27 6.65 22.59 0.15 6.42 16 11 O -0.24 -14.47 9.16 -22.91 -0.21 -14.68 16 12 C -0.49 -29.29 9.48 67.91 0.64 -28.64 16 13 H 0.09 5.12 5.20 -2.91 -0.02 5.10 16 14 C -0.04 -2.28 5.49 84.83 0.47 -1.82 16 15 N -0.91 -57.42 13.70 21.61 0.30 -57.12 16 16 Si 1.14 48.81 29.92 68.60 2.05 50.86 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.18 -7.96 9.99 22.38 0.22 -7.74 16 21 C -0.08 -3.18 9.31 22.37 0.21 -2.98 16 22 C 0.69 19.48 8.13 179.44 1.46 20.94 16 23 O -0.56 -19.01 11.55 -3.83 -0.04 -19.05 16 24 N -0.58 -10.13 3.07 -793.85 -2.44 -12.57 16 25 C 0.11 1.15 6.82 44.99 0.31 1.45 16 26 C -0.20 -3.01 9.83 30.60 0.30 -2.71 16 27 C -0.18 -2.25 10.40 30.59 0.32 -1.93 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.09 7.77 -2.39 -0.02 0.07 16 31 H 0.16 6.39 5.18 -2.91 -0.02 6.38 16 32 H 0.13 6.22 5.63 -2.91 -0.02 6.21 16 33 H 0.26 17.15 7.97 -92.71 -0.74 16.41 16 34 H 0.13 5.62 8.06 -2.91 -0.02 5.60 16 35 H 0.16 5.76 5.35 -2.91 -0.02 5.74 16 36 H 0.19 0.29 7.78 -2.39 -0.02 0.27 16 37 H 0.09 2.20 5.50 -2.39 -0.01 2.18 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.49 335.98 5.32 -74.18 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 1.13 Total: 23.93 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 6.26 Total: -14.03 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.83 Total: -87.30 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.30 Total: -47.64 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -79.49 5.32 -74.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343860582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds