Wall clock time and date at job start Tue Mar 31 2020 10:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47309 * 2 1 4 4 N 1.30255 * 125.61729 * 90.00131 * 3 2 1 5 5 C 1.34478 * 108.70193 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.16838 * 180.02562 * 5 4 3 7 7 N 1.46508 * 109.46979 * 275.02397 * 6 5 4 8 8 C 1.34775 * 119.99759 * 180.02562 * 7 6 5 9 9 O 1.21581 * 120.00221 * 359.97438 * 8 7 6 10 10 C 1.47538 * 119.99614 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.19899 * 359.97438 * 10 8 7 12 12 C 1.37827 * 119.91974 * 180.02562 * 11 10 8 13 13 C 1.38567 * 120.32168 * 359.97438 * 12 11 10 14 14 C 1.38018 * 120.40588 * 0.02562 * 13 12 11 15 15 C 1.38838 * 120.06990 * 0.02562 * 14 13 12 16 16 O 1.35520 * 120.15763 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00329 * 354.39850 * 16 15 14 18 18 H 1.07997 * 119.99773 * 5.06346 * 17 16 15 19 19 C 1.38697 * 119.99986 * 185.06090 * 17 16 15 20 20 N 1.31519 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46992 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47402 * 120.00114 * 21 19 17 24 24 H 1.48499 * 109.47443 * 240.00616 * 21 19 17 25 25 C 1.34332 * 107.66578 * 0.26325 * 5 4 3 26 26 O 1.33971 * 125.62063 * 269.96173 * 3 2 1 27 27 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46749 * 299.99646 * 1 2 3 29 29 H 1.09001 * 109.47437 * 59.99395 * 1 2 3 30 30 H 1.09004 * 109.46749 * 240.00354 * 2 1 3 31 31 H 1.09001 * 109.47437 * 120.00605 * 2 1 3 32 32 H 1.08998 * 109.47364 * 155.02546 * 6 5 4 33 33 H 1.08996 * 109.47390 * 35.01774 * 6 5 4 34 34 H 0.97000 * 119.99779 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.03846 * 0.02562 * 11 10 8 36 36 H 1.08006 * 119.83463 * 180.02562 * 12 11 10 37 37 H 1.08006 * 119.79500 * 179.74838 * 13 12 11 38 38 H 1.08006 * 119.96945 * 180.02562 * 14 13 12 39 39 H 0.97004 * 120.00647 * 179.97438 * 20 19 17 40 40 H 1.08002 * 126.44130 * 179.73591 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3487 0.6676 6 6 3.1170 4.4844 1.5728 7 7 1.9261 5.2433 1.9631 8 6 2.0444 6.3119 2.7758 9 8 3.1393 6.6458 3.1855 10 6 0.8451 7.0757 3.1693 11 6 -0.4148 6.6954 2.7015 12 6 -1.5313 7.4134 3.0723 13 6 -1.4108 8.5119 3.9083 14 6 -0.1724 8.8995 4.3784 15 6 0.9634 8.1888 4.0145 16 8 2.1804 8.5681 4.4746 17 6 2.2363 9.7111 5.1872 18 1 1.3265 10.2361 5.4380 19 6 3.4623 10.2128 5.5983 20 7 4.5703 9.5737 5.2925 21 14 3.5398 11.7962 6.5863 22 1 2.1647 12.3160 6.7970 23 1 4.1742 11.5283 7.9019 24 1 4.3418 12.8030 5.8458 25 6 2.7153 3.3672 -0.6756 26 8 2.2931 2.1562 -1.0890 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8097 5.1409 1.0462 33 1 3.6013 4.0849 2.4638 34 1 1.0526 4.9771 1.6359 35 1 -0.5140 5.8397 2.0500 36 1 -2.5050 7.1179 2.7101 37 1 -2.2910 9.0709 4.1902 38 1 -0.0867 9.7566 5.0300 39 1 5.4278 9.9247 5.5796 40 1 3.0029 4.1959 -1.3057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361388558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:13 Heat of formation + Delta-G solvation = -11.827921 kcal Electronic energy + Delta-G solvation = -25156.392173 eV Core-core repulsion = 21325.012029 eV Total energy + Delta-G solvation = -3831.380144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.53983 -39.55946 -38.07728 -36.32593 -35.52312 -34.68454 -33.39027 -32.32318 -30.84992 -29.59529 -28.90435 -26.52048 -25.31615 -24.58759 -22.95144 -21.73747 -21.34852 -20.92032 -19.89244 -18.07531 -17.82391 -17.08989 -16.84862 -16.13590 -15.51607 -15.16665 -15.05507 -14.62222 -14.55714 -14.19268 -14.18124 -13.90295 -13.71672 -13.42862 -13.04737 -12.76016 -12.60508 -12.41094 -12.19749 -12.05611 -11.70556 -11.56097 -11.31596 -11.29780 -11.10829 -10.90296 -10.76613 -10.68207 -10.43259 -9.56980 -9.15174 -8.87108 -8.74433 -8.57149 -8.25475 -7.29492 -6.43068 -4.02934 1.23583 1.73185 2.33395 2.36929 2.52743 3.12918 3.13549 3.19393 3.67423 3.76173 3.91949 3.94824 4.54064 4.61101 4.65588 4.76738 4.85772 5.00854 5.08520 5.18933 5.36743 5.41902 5.45577 5.49756 5.54447 5.65130 5.73043 5.77280 5.83828 5.95603 6.09171 6.12610 6.13870 6.57842 6.70086 6.89796 6.93452 7.07869 7.25195 7.30873 7.57243 7.70841 7.93438 8.12203 8.96571 9.09565 9.69220 10.70835 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.002938 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.592341 B = 9529.067519 C =10670.447936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 C 0.188 3.812 4 N -0.467 5.467 5 C -0.024 4.024 6 C 0.207 3.793 7 N -0.739 5.739 8 C 0.556 3.444 9 O -0.500 6.500 10 C -0.226 4.226 11 C -0.037 4.037 12 C -0.231 4.231 13 C -0.051 4.051 14 C -0.238 4.238 15 C 0.190 3.810 16 O -0.124 6.124 17 C -0.403 4.403 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.832 5.832 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.056 4.056 26 O -0.203 6.203 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.393 0.607 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.271 0.729 40 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 -14.205 -11.831 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.020 4.020 4 N -0.197 5.197 5 C -0.144 4.144 6 C 0.083 3.917 7 N -0.396 5.396 8 C 0.346 3.654 9 O -0.374 6.374 10 C -0.231 4.231 11 C -0.056 4.056 12 C -0.250 4.250 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.130 3.870 16 O -0.022 6.022 17 C -0.479 4.479 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.464 5.464 21 Si 0.765 3.235 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.127 4.127 26 O -0.089 6.089 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.227 0.773 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.891 -14.240 -10.893 19.207 hybrid contribution -0.371 1.018 -0.404 1.156 sum -7.262 -13.222 -11.297 18.846 Atomic orbital electron populations 1.21789 0.93026 1.02974 1.03109 1.20054 0.96905 0.84237 1.05129 1.26386 0.99961 0.96988 0.78644 1.70394 1.15725 1.03408 1.30137 1.21848 1.05184 0.94561 0.92813 1.19306 0.88270 0.87473 0.96690 1.45879 1.09332 1.31380 1.52962 1.18222 0.89467 0.79535 0.78205 1.90952 1.27068 1.66731 1.52640 1.18810 0.93020 1.01870 1.09379 1.20754 0.91422 0.97105 0.96347 1.20454 0.97525 1.00385 1.06624 1.20892 0.96329 0.95085 0.94612 1.21160 0.92135 1.04604 1.07809 1.19262 0.86526 0.91377 0.89785 1.84174 1.23114 1.37502 1.57417 1.21545 0.94741 0.99529 1.32094 0.88819 1.25387 0.94154 0.99263 0.97547 1.70138 0.97863 1.37536 1.40837 0.85661 0.78958 0.79910 0.78949 1.18980 1.20023 1.20026 1.24940 1.04360 0.87246 0.96203 1.84450 1.63973 1.22697 1.37808 0.90906 0.91554 0.92167 0.88983 0.87606 0.89922 0.89967 0.77284 0.87211 0.87312 0.87180 0.85041 0.91915 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.03 -0.17 6.56 -27.89 -0.18 -0.35 16 3 C 0.19 2.05 7.60 -12.95 -0.10 1.95 16 4 N -0.47 -6.40 11.29 -7.36 -0.08 -6.48 16 5 C -0.02 -0.32 6.48 -82.81 -0.54 -0.86 16 6 C 0.21 3.20 6.21 -5.19 -0.03 3.17 16 7 N -0.74 -12.62 5.50 -62.53 -0.34 -12.96 16 8 C 0.56 12.47 7.76 -12.47 -0.10 12.37 16 9 O -0.50 -13.79 15.17 -16.56 -0.25 -14.05 16 10 C -0.23 -5.00 5.89 -104.81 -0.62 -5.62 16 11 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 12 C -0.23 -3.87 10.02 -39.61 -0.40 -4.26 16 13 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 14 C -0.24 -5.16 9.16 -39.44 -0.36 -5.53 16 15 C 0.19 4.78 6.66 -38.60 -0.26 4.52 16 16 O -0.12 -3.69 7.84 -21.05 -0.16 -3.85 16 17 C -0.40 -11.48 9.49 30.90 0.29 -11.18 16 18 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 19 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 20 N -0.83 -25.21 13.67 55.48 0.76 -24.46 16 21 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 C -0.06 -0.60 12.08 29.35 0.35 -0.24 16 26 O -0.20 -2.22 10.78 5.36 0.06 -2.16 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.39 5.75 6.49 -40.82 -0.27 5.49 16 35 H 0.11 1.55 6.40 -52.48 -0.34 1.22 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.13 2.81 5.64 -52.48 -0.30 2.52 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.22 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -36.40 351.20 -6.72 -43.12 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.53 Total: 7.70 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.43 Total: -7.77 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.33 Total: -43.90 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.36 Total: -20.06 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.40 -6.72 -43.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361388558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.294 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds