Wall clock time and date at job start Tue Mar 31 2020 10:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47309 * 2 1 4 4 N 1.30255 * 125.61729 * 90.00131 * 3 2 1 5 5 C 1.34478 * 108.70193 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.16838 * 180.02562 * 5 4 3 7 7 N 1.46508 * 109.46979 * 275.02397 * 6 5 4 8 8 C 1.34775 * 119.99759 * 180.02562 * 7 6 5 9 9 O 1.21581 * 120.00221 * 359.97438 * 8 7 6 10 10 C 1.47538 * 119.99614 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.19899 * 359.97438 * 10 8 7 12 12 C 1.37827 * 119.91974 * 180.02562 * 11 10 8 13 13 C 1.38567 * 120.32168 * 359.97438 * 12 11 10 14 14 C 1.38018 * 120.40588 * 0.02562 * 13 12 11 15 15 C 1.38838 * 120.06990 * 0.02562 * 14 13 12 16 16 O 1.35520 * 120.15763 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00329 * 354.39850 * 16 15 14 18 18 H 1.07997 * 119.99773 * 5.06346 * 17 16 15 19 19 C 1.38697 * 119.99986 * 185.06090 * 17 16 15 20 20 N 1.31519 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46992 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47402 * 120.00114 * 21 19 17 24 24 H 1.48499 * 109.47443 * 240.00616 * 21 19 17 25 25 C 1.34332 * 107.66578 * 0.26325 * 5 4 3 26 26 O 1.33971 * 125.62063 * 269.96173 * 3 2 1 27 27 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46749 * 299.99646 * 1 2 3 29 29 H 1.09001 * 109.47437 * 59.99395 * 1 2 3 30 30 H 1.09004 * 109.46749 * 240.00354 * 2 1 3 31 31 H 1.09001 * 109.47437 * 120.00605 * 2 1 3 32 32 H 1.08998 * 109.47364 * 155.02546 * 6 5 4 33 33 H 1.08996 * 109.47390 * 35.01774 * 6 5 4 34 34 H 0.97000 * 119.99779 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.03846 * 0.02562 * 11 10 8 36 36 H 1.08006 * 119.83463 * 180.02562 * 12 11 10 37 37 H 1.08006 * 119.79500 * 179.74838 * 13 12 11 38 38 H 1.08006 * 119.96945 * 180.02562 * 14 13 12 39 39 H 0.97004 * 120.00647 * 179.97438 * 20 19 17 40 40 H 1.08002 * 126.44130 * 179.73591 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3487 0.6676 6 6 3.1170 4.4844 1.5728 7 7 1.9261 5.2433 1.9631 8 6 2.0444 6.3119 2.7758 9 8 3.1393 6.6458 3.1855 10 6 0.8451 7.0757 3.1693 11 6 -0.4148 6.6954 2.7015 12 6 -1.5313 7.4134 3.0723 13 6 -1.4108 8.5119 3.9083 14 6 -0.1724 8.8995 4.3784 15 6 0.9634 8.1888 4.0145 16 8 2.1804 8.5681 4.4746 17 6 2.2363 9.7111 5.1872 18 1 1.3265 10.2361 5.4380 19 6 3.4623 10.2128 5.5983 20 7 4.5703 9.5737 5.2925 21 14 3.5398 11.7962 6.5863 22 1 2.1647 12.3160 6.7970 23 1 4.1742 11.5283 7.9019 24 1 4.3418 12.8030 5.8458 25 6 2.7153 3.3672 -0.6756 26 8 2.2931 2.1562 -1.0890 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8097 5.1409 1.0462 33 1 3.6013 4.0849 2.4638 34 1 1.0526 4.9771 1.6359 35 1 -0.5140 5.8397 2.0500 36 1 -2.5050 7.1179 2.7101 37 1 -2.2910 9.0709 4.1902 38 1 -0.0867 9.7566 5.0300 39 1 5.4278 9.9247 5.5796 40 1 3.0029 4.1959 -1.3057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361388558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:12 Heat of formation + Delta-G solvation = -39.853240 kcal Electronic energy + Delta-G solvation = -25157.607442 eV Core-core repulsion = 21325.012029 eV Total energy + Delta-G solvation = -3832.595413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.43582 -41.29162 -39.83906 -38.04412 -36.73755 -35.52848 -34.55754 -34.30792 -32.33985 -30.67865 -30.56335 -27.82279 -27.21988 -25.23511 -24.51109 -23.15951 -22.52090 -21.86294 -21.53856 -19.86398 -19.42046 -18.22383 -17.82723 -17.71425 -16.97743 -16.39720 -16.35436 -15.99172 -15.93217 -15.70670 -15.56977 -15.32225 -15.25498 -14.66033 -14.36312 -14.25122 -13.92248 -13.55099 -13.53823 -13.49535 -13.00223 -12.71200 -12.59334 -12.55006 -12.34139 -12.30458 -12.08996 -12.02597 -11.62646 -11.44181 -10.84291 -10.72532 -10.19407 -9.88673 -9.81347 -9.04877 -8.44287 -6.15304 0.10346 0.37053 0.71377 1.33067 1.37441 1.43672 1.52979 1.73733 2.06345 2.16122 2.41175 2.86971 2.90346 3.21767 3.45064 3.58160 3.83158 3.95853 4.06185 4.18763 4.26840 4.27440 4.37279 4.49649 4.53155 4.57907 4.65700 4.75143 4.84907 4.96386 4.98791 5.07253 5.08714 5.12469 5.16510 5.35991 5.39914 5.47025 5.59709 5.68268 5.96394 6.15251 6.60042 6.68237 6.94928 7.40998 7.80185 8.76431 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.002938 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.592341 B = 9529.067519 C =10670.447936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.195 3.805 4 N -0.506 5.506 5 C -0.052 4.052 6 C 0.211 3.789 7 N -0.713 5.713 8 C 0.551 3.449 9 O -0.565 6.565 10 C -0.245 4.245 11 C -0.030 4.030 12 C -0.200 4.200 13 C -0.038 4.038 14 C -0.256 4.256 15 C 0.151 3.849 16 O -0.188 6.188 17 C -0.427 4.427 18 H 0.108 0.892 19 C -0.023 4.023 20 N -0.905 5.905 21 Si 1.023 2.977 22 H -0.245 1.245 23 H -0.269 1.269 24 H -0.268 1.268 25 C -0.032 4.032 26 O -0.201 6.201 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.271 0.729 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -15.336 -13.935 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.013 4.013 4 N -0.236 5.236 5 C -0.171 4.171 6 C 0.087 3.913 7 N -0.369 5.369 8 C 0.341 3.659 9 O -0.443 6.443 10 C -0.249 4.249 11 C -0.049 4.049 12 C -0.219 4.219 13 C -0.056 4.056 14 C -0.276 4.276 15 C 0.096 3.904 16 O -0.090 6.090 17 C -0.503 4.503 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.541 5.541 21 Si 0.841 3.159 22 H -0.168 1.168 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.103 4.103 26 O -0.088 6.088 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.224 -15.427 -13.044 23.111 hybrid contribution 0.555 1.062 0.004 1.199 sum -10.668 -14.364 -13.040 22.140 Atomic orbital electron populations 1.21770 0.92222 1.04252 1.02203 1.20346 0.97430 0.81983 1.06665 1.27189 0.98327 0.97919 0.77912 1.70342 1.17403 1.04018 1.31788 1.21465 1.08005 0.94158 0.93429 1.19189 0.87576 0.88256 0.96271 1.45640 1.10756 1.29561 1.50937 1.18512 0.88853 0.80315 0.78185 1.90932 1.29384 1.68750 1.55282 1.19233 0.94891 1.01360 1.09456 1.21238 0.89661 0.98149 0.95847 1.21156 0.99277 0.98042 1.03399 1.21435 0.95949 0.95223 0.93029 1.21313 0.92916 1.04679 1.08644 1.20043 0.86649 0.92879 0.90814 1.84178 1.25568 1.38901 1.60402 1.22086 0.95655 1.00047 1.32489 0.87502 1.26768 0.93350 1.03313 0.98747 1.70328 0.98665 1.40576 1.44493 0.84492 0.79860 0.74598 0.76914 1.16811 1.19447 1.19338 1.25444 1.01789 0.87653 0.95457 1.84500 1.63826 1.22669 1.37755 0.88580 0.93306 0.92134 0.86372 0.87125 0.89640 0.92624 0.75492 0.83024 0.81914 0.82683 0.85716 0.92010 0.73253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.65 16 2 C -0.03 -0.29 6.56 29.85 0.20 -0.09 16 3 C 0.19 3.88 7.60 88.34 0.67 4.55 16 4 N -0.51 -13.50 11.29 -291.98 -3.30 -16.80 16 5 C -0.05 -1.35 6.48 41.26 0.27 -1.08 16 6 C 0.21 6.78 6.21 85.63 0.53 7.32 16 7 N -0.71 -24.57 5.50 -470.00 -2.58 -27.16 16 8 C 0.55 25.86 7.76 86.70 0.67 26.53 16 9 O -0.56 -33.84 15.17 16.92 0.26 -33.59 16 10 C -0.24 -10.93 5.89 -19.99 -0.12 -11.05 16 11 C -0.03 -0.97 9.53 22.52 0.21 -0.75 16 12 C -0.20 -5.53 10.02 22.25 0.22 -5.31 16 13 C -0.04 -1.21 10.03 22.30 0.22 -0.98 16 14 C -0.26 -11.06 9.16 22.36 0.20 -10.85 16 15 C 0.15 7.92 6.66 22.91 0.15 8.07 16 16 O -0.19 -12.09 7.84 0.84 0.01 -12.08 16 17 C -0.43 -25.99 9.49 67.93 0.64 -25.34 16 18 H 0.11 5.83 5.21 -2.91 -0.02 5.81 16 19 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 20 N -0.90 -59.51 13.67 21.62 0.30 -59.22 16 21 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C -0.03 -0.61 12.08 66.93 0.81 0.20 16 26 O -0.20 -3.87 10.78 -3.74 -0.04 -3.91 16 27 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.41 11.24 6.49 -92.71 -0.60 10.64 16 35 H 0.15 3.50 6.40 -2.91 -0.02 3.48 16 36 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.13 5.43 5.64 -2.91 -0.02 5.41 16 39 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 40 H 0.25 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -91.27 351.20 3.03 -88.24 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.49 Total: 28.33 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.87 Total: -10.34 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -5.59 Total: -103.17 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: 0.22 Total: -49.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -91.27 3.03 -88.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361388558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.387 kcal (2) G-P(sol) polarization free energy of solvation -91.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds