Wall clock time and date at job start Tue Mar 31 2020 10:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31822 * 119.12357 * 2 1 4 4 C 1.32313 * 120.81495 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10687 * 0.02562 * 4 3 2 6 6 C 1.38572 * 118.39782 * 0.27200 * 5 4 3 7 7 C 1.50699 * 120.44547 * 179.72868 * 6 5 4 8 8 C 1.53000 * 109.47627 * 124.99571 * 7 6 5 9 9 C 1.50701 * 109.47349 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00084 * 359.97438 * 9 8 7 11 11 O 1.34224 * 119.99691 * 180.02562 * 9 8 7 12 12 C 1.45202 * 116.99976 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47307 * 330.00199 * 12 11 9 14 14 C 1.50700 * 109.47238 * 209.99832 * 12 11 9 15 15 H 1.08001 * 120.00339 * 273.48366 * 14 12 11 16 16 C 1.37878 * 119.99781 * 93.48252 * 14 12 11 17 17 N 1.31514 * 119.99913 * 181.27141 * 16 14 12 18 18 Si 1.86800 * 120.00099 * 1.28249 * 16 14 12 19 19 H 1.48495 * 109.47753 * 84.87875 * 18 16 14 20 20 H 1.48503 * 109.47205 * 204.88135 * 18 16 14 21 21 H 1.48504 * 109.46983 * 324.87428 * 18 16 14 22 22 C 1.50698 * 109.47042 * 89.99996 * 12 11 9 23 23 C 1.34516 * 125.78916 * 216.36469 * 22 12 11 24 24 C 1.41387 * 106.84087 * 179.88970 * 23 22 12 25 25 C 1.34518 * 106.83943 * 0.37357 * 24 23 22 26 26 O 1.34299 * 108.41972 * 359.76878 * 25 24 23 27 27 N 1.31777 * 119.12654 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47350 * 89.99436 * 1 2 3 29 29 H 1.08995 * 109.46909 * 210.00139 * 1 2 3 30 30 H 1.09007 * 109.46665 * 329.99630 * 1 2 3 31 31 H 1.08005 * 120.44328 * 180.02562 * 4 3 2 32 32 H 1.08008 * 120.79721 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46972 * 244.99975 * 7 6 5 34 34 H 1.09006 * 109.47627 * 4.99420 * 7 6 5 35 35 H 1.08995 * 109.47095 * 300.00214 * 8 7 6 36 36 H 1.09006 * 109.46740 * 59.99307 * 8 7 6 37 37 H 0.97006 * 119.99966 * 180.02562 * 17 16 14 38 38 H 1.08000 * 126.57749 * 0.02936 * 23 22 12 39 39 H 1.08003 * 126.57825 * 180.16932 * 24 23 22 40 40 H 1.08000 * 125.78563 * 179.75431 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4712 -1.1903 -0.0079 7 6 4.1961 -2.5115 -0.0155 8 6 3.7166 -3.3632 1.1617 9 6 4.4411 -4.6846 1.1537 10 8 5.2568 -4.9211 0.2944 11 8 4.1794 -5.5991 2.1006 12 6 4.9150 -6.8491 2.0312 13 1 5.1546 -7.0724 0.9915 14 6 4.0724 -7.9603 2.6024 15 1 4.0867 -8.1578 3.6641 16 6 3.2832 -8.7249 1.7695 17 7 2.5289 -9.6783 2.2711 18 14 3.2858 -8.4067 -0.0712 19 1 4.4146 -9.1395 -0.6987 20 1 2.0043 -8.8764 -0.6565 21 1 3.4402 -6.9511 -0.3217 22 6 6.1899 -6.7264 2.8253 23 6 7.3734 -7.2789 2.5035 24 6 8.2874 -6.9085 3.5167 25 6 7.6057 -6.1586 4.4013 26 8 6.3359 -6.0516 3.9774 27 7 2.1484 -1.1511 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2609 -0.0001 -0.0024 33 1 3.9897 -3.0338 -0.9497 34 1 5.2685 -2.3382 0.0745 35 1 3.9230 -2.8409 2.0958 36 1 2.6442 -3.5365 1.0717 37 1 1.9739 -10.2165 1.6850 38 1 7.5853 -7.8868 1.6364 39 1 9.3316 -7.1787 3.5716 40 1 8.0109 -5.7177 5.3000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650514331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:04 Heat of formation + Delta-G solvation = -32.104967 kcal Electronic energy + Delta-G solvation = -25437.053210 eV Core-core repulsion = 21604.793787 eV Total energy + Delta-G solvation = -3832.259423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85241 -41.28209 -39.57067 -36.09700 -35.03961 -33.59845 -33.16632 -32.30818 -31.69024 -30.46598 -28.73361 -27.22633 -26.08145 -23.53256 -22.86053 -21.98712 -21.11368 -20.22994 -19.44444 -17.80811 -17.52037 -17.23821 -16.76799 -16.22522 -15.83229 -15.44113 -15.38461 -15.27936 -15.07036 -14.57380 -14.01997 -13.48269 -13.39877 -13.05714 -12.86333 -12.80420 -12.55204 -12.31757 -12.18547 -12.13068 -12.00990 -11.66342 -11.36636 -11.26090 -11.02463 -11.00342 -10.65432 -10.20298 -9.86117 -9.78314 -9.66845 -9.55542 -9.39013 -9.26678 -8.99481 -7.76301 -6.52130 -4.61704 0.70099 0.87059 2.41506 2.90871 3.06150 3.18844 3.23098 3.27636 3.45380 3.59256 3.71706 3.76393 3.90452 4.09283 4.31559 4.73437 4.84538 4.94532 5.04023 5.08069 5.20236 5.25259 5.34301 5.34719 5.49997 5.60853 5.66157 5.68897 5.73252 5.93306 5.98144 6.03624 6.17185 6.25129 6.42139 6.54457 6.72801 6.84519 7.05356 7.12026 7.43431 7.86403 7.93076 8.04076 8.58663 8.61978 9.04190 10.56506 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003696 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.666633 B = 7573.810765 C = 8985.996722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.188 3.812 7 C -0.061 4.061 8 C -0.111 4.111 9 C 0.450 3.550 10 O -0.530 6.530 11 O -0.352 6.352 12 C 0.253 3.747 13 H 0.080 0.920 14 C -0.507 4.507 15 H 0.090 0.910 16 C 0.092 3.908 17 N -0.856 5.856 18 Si 0.871 3.129 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.258 1.258 22 C 0.032 3.968 23 C -0.228 4.228 24 C -0.210 4.210 25 C -0.072 4.072 26 O -0.168 6.168 27 N -0.515 5.515 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.276 0.724 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 17.502 -3.531 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.255 4.255 6 C 0.042 3.958 7 C -0.099 4.099 8 C -0.150 4.150 9 C 0.294 3.706 10 O -0.421 6.421 11 O -0.268 6.268 12 C 0.202 3.798 13 H 0.097 0.903 14 C -0.542 4.542 15 H 0.108 0.892 16 C -0.117 4.117 17 N -0.491 5.491 18 Si 0.696 3.304 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.182 1.182 22 C -0.019 4.019 23 C -0.247 4.247 24 C -0.230 4.230 25 C -0.139 4.139 26 O -0.064 6.064 27 N -0.230 5.230 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.684 17.375 -3.627 17.830 hybrid contribution 1.342 -0.114 -0.937 1.640 sum 3.026 17.262 -4.564 18.109 Atomic orbital electron populations 1.20583 0.85652 1.04325 1.03893 1.23305 0.98253 0.83286 0.89916 1.68262 1.10187 1.30546 1.15319 1.23213 0.89710 0.98570 0.89924 1.22792 1.03084 0.94090 1.05499 1.21736 0.89562 0.95822 0.88643 1.20445 0.99385 0.89787 1.00281 1.21272 1.02678 0.91287 0.99737 1.23524 0.80348 0.86702 0.80033 1.90565 1.34193 1.79522 1.37804 1.87128 1.62792 1.27516 1.49372 1.19552 0.84528 0.80868 0.94855 0.90284 1.20803 1.26275 1.09537 0.97578 0.89242 1.25124 0.93129 0.93890 0.99595 1.69860 1.23701 1.18775 1.36714 0.86896 0.78720 0.80377 0.84401 1.19011 1.20129 1.18194 1.23313 0.97409 0.95270 0.85953 1.21371 0.92458 1.07851 1.03066 1.21674 1.00503 1.03881 0.96894 1.23830 0.82520 1.05794 1.01798 1.84074 1.29234 1.58793 1.34284 1.68115 1.09615 1.30546 1.14695 0.89641 0.89320 0.89672 0.81479 0.83352 0.88295 0.88771 0.88365 0.87010 0.91365 0.84020 0.84193 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.32 36.00 0.37 -0.39 16 2 C 0.32 3.86 7.64 -157.19 -1.20 2.66 16 3 N -0.53 -6.14 10.34 -10.72 -0.11 -6.25 16 4 C 0.15 1.43 11.30 -17.20 -0.19 1.24 16 5 C -0.23 -2.28 9.80 -39.32 -0.39 -2.67 16 6 C 0.19 2.32 6.21 -82.25 -0.51 1.81 16 7 C -0.06 -0.80 4.94 -27.88 -0.14 -0.94 16 8 C -0.11 -1.72 5.68 -27.88 -0.16 -1.88 16 9 C 0.45 9.28 7.85 36.01 0.28 9.56 16 10 O -0.53 -11.76 15.20 -18.75 -0.28 -12.05 16 11 O -0.35 -8.37 9.84 -41.79 -0.41 -8.78 16 12 C 0.25 6.36 1.96 -29.04 -0.06 6.30 16 13 H 0.08 2.01 4.56 -51.93 -0.24 1.77 16 14 C -0.51 -14.14 9.23 -34.44 -0.32 -14.46 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 17 N -0.86 -24.45 13.96 55.43 0.77 -23.68 16 18 Si 0.87 20.78 26.90 -169.99 -4.57 16.21 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.26 -6.21 6.91 56.52 0.39 -5.82 16 22 C 0.03 0.74 6.17 -35.63 -0.22 0.52 16 23 C -0.23 -4.77 10.81 -39.70 -0.43 -5.20 16 24 C -0.21 -3.70 10.91 -39.70 -0.43 -4.14 16 25 C -0.07 -1.25 12.09 29.42 0.36 -0.89 16 26 O -0.17 -3.67 10.64 2.91 0.03 -3.64 16 27 N -0.51 -6.92 9.93 -6.99 -0.07 -6.99 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.15 1.05 8.01 -52.48 -0.42 0.63 16 33 H 0.10 1.38 8.10 -51.93 -0.42 0.96 16 34 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.11 1.72 7.98 -51.93 -0.41 1.30 16 37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 40 H 0.19 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -33.39 356.02 -7.27 -40.66 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.85 Total: 5.18 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.13 Total: -6.02 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.59 Total: -36.92 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.67 Total: -24.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.57 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.39 -7.27 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650514331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.555 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds