Wall clock time and date at job start Tue Mar 31 2020 10:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31822 * 119.12357 * 2 1 4 4 C 1.32313 * 120.81495 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10687 * 0.02562 * 4 3 2 6 6 C 1.38572 * 118.39782 * 0.27200 * 5 4 3 7 7 C 1.50699 * 120.44547 * 179.72868 * 6 5 4 8 8 C 1.53000 * 109.47627 * 124.99571 * 7 6 5 9 9 C 1.50701 * 109.47349 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00084 * 359.97438 * 9 8 7 11 11 O 1.34224 * 119.99691 * 180.02562 * 9 8 7 12 12 C 1.45202 * 116.99976 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47307 * 330.00199 * 12 11 9 14 14 C 1.50700 * 109.47238 * 209.99832 * 12 11 9 15 15 H 1.08001 * 120.00339 * 273.48366 * 14 12 11 16 16 C 1.37878 * 119.99781 * 93.48252 * 14 12 11 17 17 N 1.31514 * 119.99913 * 181.27141 * 16 14 12 18 18 Si 1.86800 * 120.00099 * 1.28249 * 16 14 12 19 19 H 1.48495 * 109.47753 * 84.87875 * 18 16 14 20 20 H 1.48503 * 109.47205 * 204.88135 * 18 16 14 21 21 H 1.48504 * 109.46983 * 324.87428 * 18 16 14 22 22 C 1.50698 * 109.47042 * 89.99996 * 12 11 9 23 23 C 1.34516 * 125.78916 * 216.36469 * 22 12 11 24 24 C 1.41387 * 106.84087 * 179.88970 * 23 22 12 25 25 C 1.34518 * 106.83943 * 0.37357 * 24 23 22 26 26 O 1.34299 * 108.41972 * 359.76878 * 25 24 23 27 27 N 1.31777 * 119.12654 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47350 * 89.99436 * 1 2 3 29 29 H 1.08995 * 109.46909 * 210.00139 * 1 2 3 30 30 H 1.09007 * 109.46665 * 329.99630 * 1 2 3 31 31 H 1.08005 * 120.44328 * 180.02562 * 4 3 2 32 32 H 1.08008 * 120.79721 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46972 * 244.99975 * 7 6 5 34 34 H 1.09006 * 109.47627 * 4.99420 * 7 6 5 35 35 H 1.08995 * 109.47095 * 300.00214 * 8 7 6 36 36 H 1.09006 * 109.46740 * 59.99307 * 8 7 6 37 37 H 0.97006 * 119.99966 * 180.02562 * 17 16 14 38 38 H 1.08000 * 126.57749 * 0.02936 * 23 22 12 39 39 H 1.08003 * 126.57825 * 180.16932 * 24 23 22 40 40 H 1.08000 * 125.78563 * 179.75431 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4712 -1.1903 -0.0079 7 6 4.1961 -2.5115 -0.0155 8 6 3.7166 -3.3632 1.1617 9 6 4.4411 -4.6846 1.1537 10 8 5.2568 -4.9211 0.2944 11 8 4.1794 -5.5991 2.1006 12 6 4.9150 -6.8491 2.0312 13 1 5.1546 -7.0724 0.9915 14 6 4.0724 -7.9603 2.6024 15 1 4.0867 -8.1578 3.6641 16 6 3.2832 -8.7249 1.7695 17 7 2.5289 -9.6783 2.2711 18 14 3.2858 -8.4067 -0.0712 19 1 4.4146 -9.1395 -0.6987 20 1 2.0043 -8.8764 -0.6565 21 1 3.4402 -6.9511 -0.3217 22 6 6.1899 -6.7264 2.8253 23 6 7.3734 -7.2789 2.5035 24 6 8.2874 -6.9085 3.5167 25 6 7.6057 -6.1586 4.4013 26 8 6.3359 -6.0516 3.9774 27 7 2.1484 -1.1511 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2609 -0.0001 -0.0024 33 1 3.9897 -3.0338 -0.9497 34 1 5.2685 -2.3382 0.0745 35 1 3.9230 -2.8409 2.0958 36 1 2.6442 -3.5365 1.0717 37 1 1.9739 -10.2165 1.6850 38 1 7.5853 -7.8868 1.6364 39 1 9.3316 -7.1787 3.5716 40 1 8.0109 -5.7177 5.3000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650514331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:03 Heat of formation + Delta-G solvation = -52.525477 kcal Electronic energy + Delta-G solvation = -25437.938709 eV Core-core repulsion = 21604.793787 eV Total energy + Delta-G solvation = -3833.144923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42065 -42.12317 -41.26471 -37.76996 -36.15419 -35.19984 -34.38278 -33.90973 -32.89803 -32.10158 -29.49755 -28.94567 -27.28773 -24.89753 -24.14123 -23.04586 -22.61171 -21.74067 -21.07144 -19.56177 -18.83027 -18.63471 -18.36450 -17.60365 -17.00725 -16.96625 -16.72940 -16.43056 -16.15865 -16.02975 -15.50256 -14.90256 -14.76106 -14.25678 -14.12963 -13.90144 -13.78320 -13.68068 -13.54088 -13.37991 -13.26474 -13.20277 -13.05667 -12.91863 -12.42051 -12.06448 -11.86588 -11.82548 -11.63946 -11.60816 -11.41735 -11.07686 -10.78530 -10.36416 -10.24543 -9.34081 -8.62850 -6.78752 -0.11342 0.06570 0.85185 1.18916 1.22548 1.25338 1.35273 1.71077 1.92244 2.09521 2.23955 2.70518 2.84416 2.94922 3.14875 3.49085 3.66370 3.88798 3.96704 4.07674 4.10248 4.17556 4.19176 4.23852 4.36815 4.47108 4.52197 4.58914 4.70301 4.74927 4.88931 4.92262 5.00049 5.01298 5.05651 5.06800 5.21495 5.47690 5.63367 5.71259 5.98727 6.04423 6.30221 6.35154 6.88092 6.91885 7.10681 8.50917 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003696 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.666633 B = 7573.810765 C = 8985.996722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.541 5.541 4 C 0.152 3.848 5 C -0.224 4.224 6 C 0.169 3.831 7 C -0.052 4.052 8 C -0.099 4.099 9 C 0.444 3.556 10 O -0.546 6.546 11 O -0.369 6.369 12 C 0.262 3.738 13 H 0.072 0.928 14 C -0.525 4.525 15 H 0.047 0.953 16 C 0.050 3.950 17 N -0.899 5.899 18 Si 0.929 3.071 19 H -0.251 1.251 20 H -0.260 1.260 21 H -0.266 1.266 22 C -0.018 4.018 23 C -0.229 4.229 24 C -0.214 4.214 25 C -0.057 4.057 26 O -0.192 6.192 27 N -0.543 5.543 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.207 0.793 32 H 0.179 0.821 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.283 0.717 38 H 0.148 0.852 39 H 0.181 0.819 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 19.950 -4.088 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.256 5.256 4 C -0.014 4.014 5 C -0.245 4.245 6 C 0.024 3.976 7 C -0.090 4.090 8 C -0.137 4.137 9 C 0.290 3.710 10 O -0.437 6.437 11 O -0.286 6.286 12 C 0.210 3.790 13 H 0.090 0.910 14 C -0.561 4.561 15 H 0.065 0.935 16 C -0.155 4.155 17 N -0.535 5.535 18 Si 0.751 3.249 19 H -0.175 1.175 20 H -0.185 1.185 21 H -0.190 1.190 22 C -0.069 4.069 23 C -0.248 4.248 24 C -0.233 4.233 25 C -0.124 4.124 26 O -0.088 6.088 27 N -0.259 5.259 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.223 0.777 32 H 0.196 0.804 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.166 0.834 39 H 0.198 0.802 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.568 19.820 -4.188 20.569 hybrid contribution 0.883 -0.745 -0.652 1.327 sum 4.451 19.075 -4.841 20.177 Atomic orbital electron populations 1.20657 0.84171 1.04779 1.04667 1.23777 0.99419 0.83184 0.90073 1.68339 1.11425 1.30259 1.15625 1.23903 0.89139 1.00066 0.88281 1.23087 1.04524 0.93073 1.03834 1.21681 0.89603 0.96125 0.90238 1.20345 1.00296 0.89907 0.98413 1.21308 1.01806 0.88641 1.01967 1.24417 0.80338 0.87507 0.78762 1.90540 1.35092 1.79996 1.38120 1.87002 1.63121 1.27768 1.50678 1.19143 0.84808 0.80465 0.94609 0.91043 1.20814 1.27684 1.11790 0.95812 0.93451 1.25823 0.92507 0.93465 1.03738 1.69943 1.25005 1.20063 1.38462 0.86002 0.79805 0.79762 0.79322 1.17548 1.18450 1.19024 1.23050 0.97578 0.98637 0.87626 1.21754 0.92577 1.06610 1.03890 1.22105 1.01995 1.03596 0.95587 1.24944 0.80645 1.04164 1.02600 1.84031 1.31706 1.59133 1.33958 1.68076 1.10456 1.31559 1.15802 0.88643 0.89538 0.88490 0.77681 0.80407 0.89561 0.87352 0.86458 0.87086 0.90719 0.83431 0.80173 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.32 71.23 0.74 -0.69 16 2 C 0.30 6.98 7.64 138.75 1.06 8.04 16 3 N -0.54 -11.51 10.34 -187.84 -1.94 -13.45 16 4 C 0.15 2.41 11.30 84.71 0.96 3.36 16 5 C -0.22 -3.74 9.80 22.44 0.22 -3.52 16 6 C 0.17 3.90 6.21 42.56 0.26 4.16 16 7 C -0.05 -1.30 4.94 29.85 0.15 -1.15 16 8 C -0.10 -3.00 5.68 29.85 0.17 -2.84 16 9 C 0.44 18.43 7.85 71.24 0.56 18.99 16 10 O -0.55 -24.25 15.20 21.98 0.33 -23.92 16 11 O -0.37 -18.07 9.84 -48.91 -0.48 -18.55 16 12 C 0.26 13.58 1.96 29.10 0.06 13.64 16 13 H 0.07 3.73 4.56 -2.38 -0.01 3.72 16 14 C -0.53 -30.89 9.23 25.60 0.24 -30.65 16 15 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 16 C 0.05 2.86 5.47 84.65 0.46 3.32 16 17 N -0.90 -53.31 13.96 21.45 0.30 -53.01 16 18 Si 0.93 43.83 26.90 68.60 1.85 45.68 16 19 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.27 -12.73 6.91 99.48 0.69 -12.05 16 22 C -0.02 -0.87 6.17 24.83 0.15 -0.72 16 23 C -0.23 -9.44 10.81 22.19 0.24 -9.20 16 24 C -0.21 -6.94 10.91 22.19 0.24 -6.70 16 25 C -0.06 -1.83 12.09 66.97 0.81 -1.02 16 26 O -0.19 -8.33 10.64 0.20 0.00 -8.33 16 27 N -0.54 -14.17 9.93 -176.03 -1.75 -15.92 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.18 1.81 8.01 -2.91 -0.02 1.78 16 33 H 0.09 2.37 8.10 -2.38 -0.02 2.35 16 34 H 0.11 2.37 7.90 -2.38 -0.02 2.35 16 35 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.11 3.42 7.98 -2.38 -0.02 3.40 16 37 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 38 H 0.15 5.71 8.06 -2.91 -0.02 5.69 16 39 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 40 H 0.25 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -76.77 356.02 5.67 -71.10 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.04 Total: 21.35 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.31 Total: -4.96 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.39 Total: -82.37 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.15 Total: -50.80 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.85 Total: 45.68 kcal Total: -76.77 5.67 -71.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650514331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.576 kcal (2) G-P(sol) polarization free energy of solvation -76.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds