Wall clock time and date at job start Tue Mar 31 2020 11:06:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46501 * 109.47225 * 2 1
4 4 C 1.46504 * 120.00146 * 270.00465 * 3 2 1
5 5 C 1.50694 * 109.47031 * 269.99629 * 4 3 2
6 6 H 1.08007 * 120.00358 * 0.02562 * 5 4 3
7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3
8 8 N 1.31511 * 119.99815 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99972 * 180.02562 * 7 5 4
10 10 H 1.48496 * 109.47434 * 60.00397 * 9 7 5
11 11 H 1.48502 * 109.46924 * 180.02562 * 9 7 5
12 12 H 1.48504 * 109.46909 * 300.00172 * 9 7 5
13 13 C 1.34777 * 119.99714 * 90.00249 * 3 2 1
14 14 O 1.21283 * 119.99814 * 180.02562 * 13 3 2
15 15 C 1.50700 * 120.00088 * 0.02562 * 13 3 2
16 16 O 1.45201 * 109.47221 * 180.02562 * 15 13 3
17 17 C 1.34710 * 117.00062 * 180.02562 * 16 15 13
18 18 O 1.21463 * 119.99826 * 359.97438 * 17 16 15
19 19 C 1.47795 * 119.99823 * 179.97438 * 17 16 15
20 20 C 1.39679 * 119.99548 * 179.97438 * 19 17 16
21 21 C 1.37715 * 119.99831 * 180.02562 * 20 19 17
22 22 C 1.39678 * 119.99982 * 359.97438 * 21 20 19
23 23 C 1.43205 * 120.00165 * 180.02562 * 22 21 20
24 24 N 9.83797 * 130.63246 * 233.92371 * 13 1 2
25 25 C 1.39680 * 119.99800 * 0.27512 * 22 21 20
26 26 C 1.37718 * 120.00234 * 359.48947 * 25 22 21
27 27 H 1.09001 * 109.47160 * 179.97438 * 1 2 3
28 28 H 1.09006 * 109.46937 * 299.99247 * 1 2 3
29 29 H 1.08997 * 109.47695 * 59.99533 * 1 2 3
30 30 H 1.09006 * 109.46937 * 240.00753 * 2 1 3
31 31 H 1.08997 * 109.47695 * 120.00467 * 2 1 3
32 32 H 1.08994 * 109.47065 * 29.99718 * 4 3 2
33 33 H 1.09000 * 109.46609 * 149.99765 * 4 3 2
34 34 H 0.96998 * 120.00087 * 179.97438 * 8 7 5
35 35 H 1.08999 * 109.47600 * 59.99808 * 15 13 3
36 36 H 1.09008 * 109.46873 * 299.99841 * 15 13 3
37 37 H 1.07997 * 120.00003 * 359.97438 * 20 19 17
38 38 H 1.08000 * 120.00060 * 179.97438 * 21 20 19
39 39 H 1.08004 * 119.99743 * 179.71966 * 25 22 21
40 40 H 1.07999 * 120.00218 * 180.23616 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0719 -1.2687
5 6 3.6856 1.8352 -1.7038
6 1 4.3426 1.2303 -1.0963
7 6 4.1489 2.3898 -2.8780
8 7 3.3488 3.1259 -3.6180
9 14 5.9129 2.0958 -3.4177
10 1 6.1401 0.6390 -3.5950
11 1 6.1604 2.7960 -4.7036
12 1 6.8408 2.6191 -2.3830
13 6 2.2430 2.0165 1.1672
14 8 2.6468 3.1601 1.1673
15 6 1.9924 1.3058 2.4723
16 8 2.3062 2.1956 3.5760
17 6 2.1355 1.7098 4.8208
18 8 1.7350 0.5742 4.9799
19 6 2.4356 2.5586 5.9929
20 6 2.2580 2.0550 7.2836
21 6 2.5371 2.8460 8.3758
22 6 2.9983 4.1517 8.1928
23 6 3.2890 4.9742 9.3286
24 7 3.5187 5.6269 10.2294
25 6 3.1708 4.6570 6.9021
26 6 2.8963 3.8644 5.8099
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5137 0.8901
29 1 -0.3634 0.5139 -0.8899
30 1 1.8933 -0.5137 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 1.5816 1.6878 -2.0283
33 1 2.0954 3.1411 -1.1383
34 1 3.6748 3.5164 -4.4439
35 1 2.6228 0.4185 2.5299
36 1 0.9444 1.0113 2.5302
37 1 1.9011 1.0456 7.4250
38 1 2.3995 2.4568 9.3738
39 1 3.5230 5.6682 6.7607
40 1 3.0334 4.2538 4.8119
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000050356071.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:06
Heat of formation + Delta-G solvation = -78.948236 kcal
Electronic energy + Delta-G solvation = -24732.226788 eV
Core-core repulsion = 20897.936088 eV
Total energy + Delta-G solvation = -3834.290699 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.87072 -40.72205 -40.00116 -37.73623 -37.44048 -36.93540 -34.91675 -32.97761
-32.22993 -31.70453 -30.58825 -28.46357 -26.35368 -24.82709 -24.13461 -23.75186
-22.40145 -20.28249 -20.06075 -19.30145 -18.61392 -18.23020 -17.77515 -17.56002
-17.06945 -16.37056 -16.18283 -15.98316 -15.67369 -15.19667 -15.10103 -14.74739
-14.67501 -14.60286 -14.46246 -13.99345 -13.95953 -13.80860 -13.58493 -13.31138
-13.24488 -13.21656 -13.06136 -12.64269 -12.49723 -12.19598 -12.17908 -12.02901
-11.81287 -11.76669 -11.70692 -10.69766 -10.62371 -10.19326 -10.13803 -9.51362
-8.21227 -6.35509 -0.84500 0.26237 1.08931 1.20085 1.39154 1.42971
1.50089 1.52047 1.65729 1.97999 2.32756 2.46012 2.68023 2.77826
3.08985 3.43700 3.50602 3.77793 3.82947 3.95851 4.01796 4.10925
4.19236 4.28445 4.41414 4.62247 4.62440 4.86011 4.94893 4.96006
4.98058 5.06073 5.11590 5.20108 5.24391 5.25134 5.39502 5.56495
5.59803 5.81915 6.06351 6.33046 6.49226 6.66030 6.74084 7.24176
7.39224 8.85871
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.016696 B = 0.002626 C = 0.002374
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1676.648406 B =10660.572344 C =11790.746128
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.094 3.906
3 N -0.596 5.596
4 C 0.263 3.737
5 C -0.544 4.544
6 H 0.055 0.945
7 C 0.008 3.992
8 N -0.928 5.928
9 Si 0.966 3.034
10 H -0.260 1.260
11 H -0.280 1.280
12 H -0.277 1.277
13 C 0.499 3.501
14 O -0.576 6.576
15 C 0.063 3.937
16 O -0.342 6.342
17 C 0.507 3.493
18 O -0.516 6.516
19 C -0.107 4.107
20 C -0.050 4.050
21 C -0.066 4.066
22 C 0.005 3.995
23 C 0.278 3.722
24 N -0.451 5.451
25 C -0.074 4.074
26 C -0.065 4.065
27 H 0.097 0.903
28 H 0.059 0.941
29 H 0.042 0.958
30 H 0.080 0.920
31 H 0.100 0.900
32 H 0.028 0.972
33 H 0.000 1.000
34 H 0.267 0.733
35 H 0.120 0.880
36 H 0.125 0.875
37 H 0.162 0.838
38 H 0.173 0.827
39 H 0.159 0.841
40 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.922 -6.706 20.952 22.543
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.028 4.028
3 N -0.328 5.328
4 C 0.142 3.858
5 C -0.582 4.582
6 H 0.073 0.927
7 C -0.191 4.191
8 N -0.567 5.567
9 Si 0.790 3.210
10 H -0.185 1.185
11 H -0.205 1.205
12 H -0.203 1.203
13 C 0.286 3.714
14 O -0.456 6.456
15 C -0.014 4.014
16 O -0.257 6.257
17 C 0.353 3.647
18 O -0.406 6.406
19 C -0.109 4.109
20 C -0.068 4.068
21 C -0.086 4.086
22 C 0.001 3.999
23 C -0.037 4.037
24 N -0.126 5.126
25 C -0.094 4.094
26 C -0.083 4.083
27 H 0.115 0.885
28 H 0.078 0.922
29 H 0.062 0.938
30 H 0.098 0.902
31 H 0.118 0.882
32 H 0.046 0.954
33 H 0.018 0.982
34 H 0.076 0.924
35 H 0.138 0.862
36 H 0.142 0.858
37 H 0.179 0.821
38 H 0.190 0.810
39 H 0.177 0.823
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -4.501 -5.352 22.164 23.241
hybrid contribution 0.701 -0.046 -1.376 1.545
sum -3.800 -5.399 20.788 21.811
Atomic orbital electron populations
1.22178 0.94366 1.03756 1.01864 1.21867 0.95519 0.80996 1.04441
1.48203 1.63627 1.15253 1.05702 1.18773 0.95492 0.91692 0.79813
1.21675 0.97849 1.32133 1.06561 0.92657 1.25836 1.02284 0.94500
0.96460 1.70036 1.37771 1.34097 1.14806 0.85492 0.79154 0.79000
0.77321 1.18480 1.20526 1.20291 1.20543 0.78344 0.86679 0.85809
1.90680 1.47064 1.20076 1.87736 1.22868 1.04966 0.91950 0.81587
1.86594 1.78962 1.45283 1.14851 1.21615 0.74013 0.85807 0.83280
1.90824 1.43262 1.19728 1.86816 1.19379 1.05801 0.94701 0.91002
1.21337 0.95269 1.01268 0.88939 1.21368 0.95746 0.90743 1.00791
1.16264 1.02958 0.92903 0.87726 1.25718 0.92766 0.92657 0.92570
1.81322 1.09618 1.10001 1.11679 1.21335 0.97378 1.01249 0.89475
1.21531 0.94156 0.91941 1.00705 0.88463 0.92233 0.93840 0.90170
0.88183 0.95372 0.98173 0.92399 0.86183 0.85759 0.82072 0.80993
0.82321 0.83731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.72 10.24 71.98 0.74 -2.99 16
2 C 0.09 2.63 5.93 86.38 0.51 3.15 16
3 N -0.60 -24.00 2.46 -826.17 -2.03 -26.03 16
4 C 0.26 13.73 5.16 85.63 0.44 14.17 16
5 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16
6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16
7 C 0.01 0.47 5.46 84.66 0.46 0.93 16
8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16
9 Si 0.97 44.01 29.54 68.60 2.03 46.04 16
10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16
11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
13 C 0.50 20.05 7.75 87.66 0.68 20.73 16
14 O -0.58 -29.21 16.08 15.76 0.25 -28.95 16
15 C 0.06 1.77 4.51 71.24 0.32 2.09 16
16 O -0.34 -9.88 8.99 -49.81 -0.45 -10.33 16
17 C 0.51 11.96 7.90 70.35 0.56 12.51 16
18 O -0.52 -13.06 16.12 19.96 0.32 -12.74 16
19 C -0.11 -1.86 5.88 -20.05 -0.12 -1.97 16
20 C -0.05 -0.58 9.58 22.49 0.22 -0.36 16
21 C -0.07 -0.55 9.73 22.49 0.22 -0.33 16
22 C 0.00 0.05 5.73 -21.34 -0.12 -0.07 16
23 C 0.28 4.12 15.32 88.33 1.35 5.47 16
24 N -0.45 -9.23 18.54 19.00 0.35 -8.88 16
25 C -0.07 -0.88 9.73 22.50 0.22 -0.66 16
26 C -0.07 -1.04 9.60 22.49 0.22 -0.83 16
27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
28 H 0.06 1.25 7.22 -2.38 -0.02 1.24 16
29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
30 H 0.08 2.39 8.07 -2.38 -0.02 2.37 16
31 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16
32 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16
33 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16
34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
35 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16
36 H 0.12 2.81 7.18 -2.38 -0.02 2.80 16
37 H 0.16 1.53 7.64 -2.91 -0.02 1.50 16
38 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16
39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16
40 H 0.14 2.69 7.60 -2.91 -0.02 2.67 16
Total: -1.00 -77.27 363.79 7.77 -69.50
By element:
Atomic # 1 Polarization: 3.56 SS G_CDS: 1.07 Total: 4.63 kcal
Atomic # 6 Polarization: 15.67 SS G_CDS: 5.93 Total: 21.60 kcal
Atomic # 7 Polarization: -88.37 SS G_CDS: -1.39 Total: -89.77 kcal
Atomic # 8 Polarization: -52.14 SS G_CDS: 0.13 Total: -52.01 kcal
Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal
Total: -77.27 7.77 -69.50 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000050356071.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.446 kcal
(2) G-P(sol) polarization free energy of solvation -77.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds