Wall clock time and date at job start Tue Mar 31 2020 11:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47225 * 2 1 4 4 C 1.46504 * 120.00146 * 270.00465 * 3 2 1 5 5 C 1.50694 * 109.47031 * 269.99629 * 4 3 2 6 6 H 1.08007 * 120.00358 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47434 * 60.00397 * 9 7 5 11 11 H 1.48502 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46909 * 300.00172 * 9 7 5 13 13 C 1.34777 * 119.99714 * 90.00249 * 3 2 1 14 14 O 1.21283 * 119.99814 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00088 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47221 * 180.02562 * 15 13 3 17 17 C 1.34710 * 117.00062 * 180.02562 * 16 15 13 18 18 O 1.21463 * 119.99826 * 359.97438 * 17 16 15 19 19 C 1.47795 * 119.99823 * 179.97438 * 17 16 15 20 20 C 1.39679 * 119.99548 * 179.97438 * 19 17 16 21 21 C 1.37715 * 119.99831 * 180.02562 * 20 19 17 22 22 C 1.39678 * 119.99982 * 359.97438 * 21 20 19 23 23 C 1.43205 * 120.00165 * 180.02562 * 22 21 20 24 24 N 9.83797 * 130.63246 * 233.92371 * 13 1 2 25 25 C 1.39680 * 119.99800 * 0.27512 * 22 21 20 26 26 C 1.37718 * 120.00234 * 359.48947 * 25 22 21 27 27 H 1.09001 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46937 * 299.99247 * 1 2 3 29 29 H 1.08997 * 109.47695 * 59.99533 * 1 2 3 30 30 H 1.09006 * 109.46937 * 240.00753 * 2 1 3 31 31 H 1.08997 * 109.47695 * 120.00467 * 2 1 3 32 32 H 1.08994 * 109.47065 * 29.99718 * 4 3 2 33 33 H 1.09000 * 109.46609 * 149.99765 * 4 3 2 34 34 H 0.96998 * 120.00087 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47600 * 59.99808 * 15 13 3 36 36 H 1.09008 * 109.46873 * 299.99841 * 15 13 3 37 37 H 1.07997 * 120.00003 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.00060 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99743 * 179.71966 * 25 22 21 40 40 H 1.07999 * 120.00218 * 180.23616 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3898 -2.8780 8 7 3.3488 3.1259 -3.6180 9 14 5.9129 2.0958 -3.4177 10 1 6.1401 0.6390 -3.5950 11 1 6.1604 2.7960 -4.7036 12 1 6.8408 2.6191 -2.3830 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9924 1.3058 2.4723 16 8 2.3062 2.1956 3.5760 17 6 2.1355 1.7098 4.8208 18 8 1.7350 0.5742 4.9799 19 6 2.4356 2.5586 5.9929 20 6 2.2580 2.0550 7.2836 21 6 2.5371 2.8460 8.3758 22 6 2.9983 4.1517 8.1928 23 6 3.2890 4.9742 9.3286 24 7 3.5187 5.6269 10.2294 25 6 3.1708 4.6570 6.9021 26 6 2.8963 3.8644 5.8099 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6748 3.5164 -4.4439 35 1 2.6228 0.4185 2.5299 36 1 0.9444 1.0113 2.5302 37 1 1.9011 1.0456 7.4250 38 1 2.3995 2.4568 9.3738 39 1 3.5230 5.6682 6.7607 40 1 3.0334 4.2538 4.8119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050356071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:06 Heat of formation + Delta-G solvation = -78.948236 kcal Electronic energy + Delta-G solvation = -24732.226788 eV Core-core repulsion = 20897.936088 eV Total energy + Delta-G solvation = -3834.290699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87072 -40.72205 -40.00116 -37.73623 -37.44048 -36.93540 -34.91675 -32.97761 -32.22993 -31.70453 -30.58825 -28.46357 -26.35368 -24.82709 -24.13461 -23.75186 -22.40145 -20.28249 -20.06075 -19.30145 -18.61392 -18.23020 -17.77515 -17.56002 -17.06945 -16.37056 -16.18283 -15.98316 -15.67369 -15.19667 -15.10103 -14.74739 -14.67501 -14.60286 -14.46246 -13.99345 -13.95953 -13.80860 -13.58493 -13.31138 -13.24488 -13.21656 -13.06136 -12.64269 -12.49723 -12.19598 -12.17908 -12.02901 -11.81287 -11.76669 -11.70692 -10.69766 -10.62371 -10.19326 -10.13803 -9.51362 -8.21227 -6.35509 -0.84500 0.26237 1.08931 1.20085 1.39154 1.42971 1.50089 1.52047 1.65729 1.97999 2.32756 2.46012 2.68023 2.77826 3.08985 3.43700 3.50602 3.77793 3.82947 3.95851 4.01796 4.10925 4.19236 4.28445 4.41414 4.62247 4.62440 4.86011 4.94893 4.96006 4.98058 5.06073 5.11590 5.20108 5.24391 5.25134 5.39502 5.56495 5.59803 5.81915 6.06351 6.33046 6.49226 6.66030 6.74084 7.24176 7.39224 8.85871 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002626 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.648406 B =10660.572344 C =11790.746128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.342 6.342 17 C 0.507 3.493 18 O -0.516 6.516 19 C -0.107 4.107 20 C -0.050 4.050 21 C -0.066 4.066 22 C 0.005 3.995 23 C 0.278 3.722 24 N -0.451 5.451 25 C -0.074 4.074 26 C -0.065 4.065 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.028 0.972 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -6.706 20.952 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.257 6.257 17 C 0.353 3.647 18 O -0.406 6.406 19 C -0.109 4.109 20 C -0.068 4.068 21 C -0.086 4.086 22 C 0.001 3.999 23 C -0.037 4.037 24 N -0.126 5.126 25 C -0.094 4.094 26 C -0.083 4.083 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.177 0.823 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.501 -5.352 22.164 23.241 hybrid contribution 0.701 -0.046 -1.376 1.545 sum -3.800 -5.399 20.788 21.811 Atomic orbital electron populations 1.22178 0.94366 1.03756 1.01864 1.21867 0.95519 0.80996 1.04441 1.48203 1.63627 1.15253 1.05702 1.18773 0.95492 0.91692 0.79813 1.21675 0.97849 1.32133 1.06561 0.92657 1.25836 1.02284 0.94500 0.96460 1.70036 1.37771 1.34097 1.14806 0.85492 0.79154 0.79000 0.77321 1.18480 1.20526 1.20291 1.20543 0.78344 0.86679 0.85809 1.90680 1.47064 1.20076 1.87736 1.22868 1.04966 0.91950 0.81587 1.86594 1.78962 1.45283 1.14851 1.21615 0.74013 0.85807 0.83280 1.90824 1.43262 1.19728 1.86816 1.19379 1.05801 0.94701 0.91002 1.21337 0.95269 1.01268 0.88939 1.21368 0.95746 0.90743 1.00791 1.16264 1.02958 0.92903 0.87726 1.25718 0.92766 0.92657 0.92570 1.81322 1.09618 1.10001 1.11679 1.21335 0.97378 1.01249 0.89475 1.21531 0.94156 0.91941 1.00705 0.88463 0.92233 0.93840 0.90170 0.88183 0.95372 0.98173 0.92399 0.86183 0.85759 0.82072 0.80993 0.82321 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.99 16 2 C 0.09 2.63 5.93 86.38 0.51 3.15 16 3 N -0.60 -24.00 2.46 -826.17 -2.03 -26.03 16 4 C 0.26 13.73 5.16 85.63 0.44 14.17 16 5 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.47 5.46 84.66 0.46 0.93 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 9 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.50 20.05 7.75 87.66 0.68 20.73 16 14 O -0.58 -29.21 16.08 15.76 0.25 -28.95 16 15 C 0.06 1.77 4.51 71.24 0.32 2.09 16 16 O -0.34 -9.88 8.99 -49.81 -0.45 -10.33 16 17 C 0.51 11.96 7.90 70.35 0.56 12.51 16 18 O -0.52 -13.06 16.12 19.96 0.32 -12.74 16 19 C -0.11 -1.86 5.88 -20.05 -0.12 -1.97 16 20 C -0.05 -0.58 9.58 22.49 0.22 -0.36 16 21 C -0.07 -0.55 9.73 22.49 0.22 -0.33 16 22 C 0.00 0.05 5.73 -21.34 -0.12 -0.07 16 23 C 0.28 4.12 15.32 88.33 1.35 5.47 16 24 N -0.45 -9.23 18.54 19.00 0.35 -8.88 16 25 C -0.07 -0.88 9.73 22.50 0.22 -0.66 16 26 C -0.07 -1.04 9.60 22.49 0.22 -0.83 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.25 7.22 -2.38 -0.02 1.24 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.39 8.07 -2.38 -0.02 2.37 16 31 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 32 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16 36 H 0.12 2.81 7.18 -2.38 -0.02 2.80 16 37 H 0.16 1.53 7.64 -2.91 -0.02 1.50 16 38 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.69 7.60 -2.91 -0.02 2.67 16 Total: -1.00 -77.27 363.79 7.77 -69.50 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.07 Total: 4.63 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 5.93 Total: 21.60 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -1.39 Total: -89.77 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: 0.13 Total: -52.01 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -77.27 7.77 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050356071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.446 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds