Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38195 * 125.60424 * 2 1 4 4 C 1.46885 * 125.44441 * 359.73535 * 3 2 1 5 5 O 1.21574 * 120.00344 * 179.97438 * 4 3 2 6 6 O 1.34853 * 119.99879 * 0.02562 * 4 3 2 7 7 C 1.45202 * 116.99882 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47070 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00034 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99891 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99869 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46978 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47112 * 59.99739 * 16 14 12 18 18 H 1.48509 * 109.47303 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47030 * 299.99868 * 16 14 12 20 20 C 1.35959 * 109.11438 * 179.97438 * 3 2 1 21 21 C 1.41549 * 107.72063 * 0.02562 * 20 3 2 22 22 C 1.40121 * 133.36796 * 180.02562 * 21 20 3 23 23 C 1.36427 * 119.83298 * 179.97438 * 22 21 20 24 24 C 1.38952 * 120.61583 * 359.95340 * 23 22 21 25 25 C 1.37660 * 120.65165 * 0.02562 * 24 23 22 26 26 C 1.37467 * 125.61284 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46576 * 89.97489 * 1 2 3 28 28 H 1.09001 * 109.46790 * 209.97697 * 1 2 3 29 29 H 1.08997 * 109.46862 * 329.97538 * 1 2 3 30 30 H 1.09004 * 109.46804 * 299.99850 * 7 6 4 31 31 H 1.08995 * 109.47089 * 59.99570 * 7 6 4 32 32 H 0.97003 * 120.00263 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47267 * 299.99474 * 11 10 8 34 34 H 1.09003 * 109.46994 * 59.99449 * 11 10 8 35 35 H 0.97010 * 120.00074 * 179.97438 * 15 14 12 36 36 H 1.07992 * 126.13969 * 179.97438 * 20 3 2 37 37 H 1.08004 * 120.08230 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.69354 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.67278 * 180.02562 * 24 23 22 40 40 H 1.08010 * 120.09545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1236 0.0000 4 6 1.7926 2.5128 -0.0055 5 8 2.5909 3.4297 -0.0045 6 8 0.4690 2.7712 -0.0107 7 6 0.0700 4.1673 -0.0154 8 6 -1.4341 4.2598 -0.0201 9 8 -2.1039 3.2487 -0.0200 10 7 -2.0351 5.4662 -0.0255 11 6 -3.4973 5.5561 -0.0306 12 6 -3.9114 7.0051 -0.0354 13 1 -3.1606 7.7813 -0.0342 14 6 -5.2489 7.3397 -0.0402 15 7 -6.1633 6.3945 -0.0411 16 14 -5.7623 9.1358 -0.0468 17 1 -5.2218 9.8006 -1.2597 18 1 -7.2446 9.2269 -0.0519 19 1 -5.2288 9.8075 1.1653 20 6 3.5733 0.7377 0.0006 21 6 3.6037 -0.6775 0.0004 22 6 4.6427 -1.6176 0.0012 23 6 4.3520 -2.9505 0.0012 24 6 3.0328 -3.3871 0.0014 25 6 1.9945 -2.4833 0.0010 26 6 2.2655 -1.1176 0.0005 27 1 -0.3632 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 0.4612 4.6600 0.8748 31 1 0.4673 4.6557 -0.9051 32 1 -1.4994 6.2749 -0.0259 33 1 -3.8885 5.0632 -0.9206 34 1 -3.8945 5.0679 0.8594 35 1 -7.1044 6.6299 -0.0441 36 1 4.4315 1.3932 0.0003 37 1 5.6712 -1.2877 0.0018 38 1 5.1546 -3.6731 0.0014 39 1 2.8201 -4.4459 0.0018 40 1 0.9724 -2.8326 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052241402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = -58.557954 kcal Electronic energy + Delta-G solvation = -24763.824283 eV Core-core repulsion = 20930.417773 eV Total energy + Delta-G solvation = -3833.406511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93084 -40.36065 -38.77888 -37.26381 -36.52536 -34.33208 -33.31489 -32.47593 -30.70526 -29.99295 -28.99506 -26.83786 -26.54956 -24.59319 -22.64080 -21.89256 -21.59116 -20.26880 -19.98872 -18.27742 -17.59827 -17.21832 -16.86012 -16.56135 -16.11446 -15.57941 -15.56447 -15.20364 -14.65938 -14.58043 -14.34854 -14.20228 -13.84591 -13.32039 -13.25623 -13.15342 -13.03034 -12.76134 -12.20658 -12.05036 -11.95287 -11.87415 -11.49594 -11.20423 -11.08252 -10.98779 -10.95839 -10.83619 -10.39224 -10.07271 -9.51245 -9.29091 -8.83371 -8.53484 -8.06997 -7.98883 -6.24359 -4.32125 0.37511 1.33941 1.67954 2.14012 2.47735 2.85567 3.07306 3.21127 3.26246 3.27499 3.61191 3.85109 4.27609 4.31533 4.50368 4.59340 4.72609 4.86295 4.99485 5.10204 5.11365 5.13462 5.14158 5.23141 5.24161 5.32205 5.41716 5.57861 5.70996 5.73095 6.06271 6.15991 6.29270 6.33238 6.40657 6.75994 6.92545 7.14767 7.21565 7.38811 7.46605 7.55945 7.86317 8.41535 8.63672 8.87462 9.34408 10.85608 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.002166 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.578891 B =12924.075223 C =13664.890564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.455 5.455 3 C 0.032 3.968 4 C 0.532 3.468 5 O -0.492 6.492 6 O -0.329 6.329 7 C 0.048 3.952 8 C 0.501 3.499 9 O -0.537 6.537 10 N -0.705 5.705 11 C 0.252 3.748 12 C -0.547 4.547 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.057 4.057 23 C -0.152 4.152 24 C -0.087 4.087 25 C -0.129 4.129 26 C 0.116 3.884 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.394 0.606 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.012 -16.034 0.186 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.136 5.136 3 C -0.075 4.075 4 C 0.376 3.624 5 O -0.380 6.380 6 O -0.244 6.244 7 C -0.030 4.030 8 C 0.284 3.716 9 O -0.415 6.415 10 N -0.355 5.355 11 C 0.132 3.868 12 C -0.585 4.585 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.076 4.076 23 C -0.171 4.171 24 C -0.107 4.107 25 C -0.150 4.150 26 C 0.006 3.994 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.227 0.773 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.177 0.823 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 19.068 -16.393 0.184 25.147 hybrid contribution -0.235 1.555 -0.030 1.573 sum 18.833 -14.838 0.154 23.976 Atomic orbital electron populations 1.22324 0.74678 1.05640 1.04409 1.44203 1.06771 1.03319 1.59350 1.19084 0.90508 0.83910 1.13980 1.19984 0.81041 0.87939 0.73457 1.90907 1.56059 1.45023 1.46001 1.86656 1.24293 1.29673 1.83771 1.22953 0.95314 0.79731 1.04960 1.19838 0.87892 0.85130 0.78754 1.90689 1.65661 1.35201 1.49903 1.46374 1.10976 1.05969 1.72143 1.19179 0.72155 0.97455 0.98021 1.21165 0.92448 0.91162 1.53767 0.91782 1.24953 0.96238 0.98236 0.94544 1.69961 1.01140 1.32564 1.48501 0.86437 0.77559 0.83949 0.78755 1.20011 1.21024 1.20008 1.20886 0.94488 0.93707 1.03607 1.18141 0.92661 0.93077 1.09066 1.20392 0.97800 0.92058 0.97359 1.20636 0.96576 0.95481 1.04424 1.20899 0.92163 0.99044 0.98550 1.20106 0.99977 0.88929 1.05961 1.18403 0.89826 0.88461 1.02750 0.90347 0.89873 0.87235 0.88187 0.88173 0.77334 0.95234 0.95239 0.92281 0.82311 0.85665 0.85836 0.85509 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.49 59.85 0.63 1.41 16 2 N -0.46 -5.60 3.22 -117.71 -0.38 -5.98 16 3 C 0.03 0.43 6.81 -82.32 -0.56 -0.14 16 4 C 0.53 7.61 7.93 34.23 0.27 7.88 16 5 O -0.49 -7.59 16.63 -19.32 -0.32 -7.91 16 6 O -0.33 -4.95 7.08 -47.60 -0.34 -5.29 16 7 C 0.05 0.69 5.96 36.01 0.21 0.90 16 8 C 0.50 9.47 7.91 -10.98 -0.09 9.38 16 9 O -0.54 -12.19 16.50 -14.11 -0.23 -12.42 16 10 N -0.70 -13.98 5.55 -61.47 -0.34 -14.33 16 11 C 0.25 6.40 5.43 -5.20 -0.03 6.38 16 12 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 13 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 16 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.10 -1.17 10.53 -39.14 -0.41 -1.58 16 21 C -0.13 -1.39 6.16 -106.93 -0.66 -2.05 16 22 C -0.06 -0.50 10.06 -39.53 -0.40 -0.90 16 23 C -0.15 -1.16 9.97 -39.97 -0.40 -1.56 16 24 C -0.09 -0.67 10.01 -39.53 -0.40 -1.07 16 25 C -0.13 -1.20 9.98 -39.42 -0.39 -1.59 16 26 C 0.12 1.33 6.81 -83.98 -0.57 0.76 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 29 H 0.11 1.45 6.09 -51.93 -0.32 1.13 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.39 6.55 8.32 -40.82 -0.34 6.22 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -32.72 355.33 -8.59 -41.31 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.84 Total: 3.78 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.21 Total: 4.78 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.02 Total: -44.99 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.89 Total: -25.62 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.72 -8.59 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052241402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.248 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds