Wall clock time and date at job start Tue Mar 31 2020 11:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38195 * 125.60424 * 2 1 4 4 C 1.46885 * 125.44441 * 359.73535 * 3 2 1 5 5 O 1.21574 * 120.00344 * 179.97438 * 4 3 2 6 6 O 1.34853 * 119.99879 * 0.02562 * 4 3 2 7 7 C 1.45202 * 116.99882 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47070 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00034 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99891 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99869 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46978 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47112 * 59.99739 * 16 14 12 18 18 H 1.48509 * 109.47303 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47030 * 299.99868 * 16 14 12 20 20 C 1.35959 * 109.11438 * 179.97438 * 3 2 1 21 21 C 1.41549 * 107.72063 * 0.02562 * 20 3 2 22 22 C 1.40121 * 133.36796 * 180.02562 * 21 20 3 23 23 C 1.36427 * 119.83298 * 179.97438 * 22 21 20 24 24 C 1.38952 * 120.61583 * 359.95340 * 23 22 21 25 25 C 1.37660 * 120.65165 * 0.02562 * 24 23 22 26 26 C 1.37467 * 125.61284 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46576 * 89.97489 * 1 2 3 28 28 H 1.09001 * 109.46790 * 209.97697 * 1 2 3 29 29 H 1.08997 * 109.46862 * 329.97538 * 1 2 3 30 30 H 1.09004 * 109.46804 * 299.99850 * 7 6 4 31 31 H 1.08995 * 109.47089 * 59.99570 * 7 6 4 32 32 H 0.97003 * 120.00263 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47267 * 299.99474 * 11 10 8 34 34 H 1.09003 * 109.46994 * 59.99449 * 11 10 8 35 35 H 0.97010 * 120.00074 * 179.97438 * 15 14 12 36 36 H 1.07992 * 126.13969 * 179.97438 * 20 3 2 37 37 H 1.08004 * 120.08230 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.69354 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.67278 * 180.02562 * 24 23 22 40 40 H 1.08010 * 120.09545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1236 0.0000 4 6 1.7926 2.5128 -0.0055 5 8 2.5909 3.4297 -0.0045 6 8 0.4690 2.7712 -0.0107 7 6 0.0700 4.1673 -0.0154 8 6 -1.4341 4.2598 -0.0201 9 8 -2.1039 3.2487 -0.0200 10 7 -2.0351 5.4662 -0.0255 11 6 -3.4973 5.5561 -0.0306 12 6 -3.9114 7.0051 -0.0354 13 1 -3.1606 7.7813 -0.0342 14 6 -5.2489 7.3397 -0.0402 15 7 -6.1633 6.3945 -0.0411 16 14 -5.7623 9.1358 -0.0468 17 1 -5.2218 9.8006 -1.2597 18 1 -7.2446 9.2269 -0.0519 19 1 -5.2288 9.8075 1.1653 20 6 3.5733 0.7377 0.0006 21 6 3.6037 -0.6775 0.0004 22 6 4.6427 -1.6176 0.0012 23 6 4.3520 -2.9505 0.0012 24 6 3.0328 -3.3871 0.0014 25 6 1.9945 -2.4833 0.0010 26 6 2.2655 -1.1176 0.0005 27 1 -0.3632 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 0.4612 4.6600 0.8748 31 1 0.4673 4.6557 -0.9051 32 1 -1.4994 6.2749 -0.0259 33 1 -3.8885 5.0632 -0.9206 34 1 -3.8945 5.0679 0.8594 35 1 -7.1044 6.6299 -0.0441 36 1 4.4315 1.3932 0.0003 37 1 5.6712 -1.2877 0.0018 38 1 5.1546 -3.6731 0.0014 39 1 2.8201 -4.4459 0.0018 40 1 0.9724 -2.8326 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052241402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:58 Heat of formation + Delta-G solvation = -78.026568 kcal Electronic energy + Delta-G solvation = -24764.668506 eV Core-core repulsion = 20930.417773 eV Total energy + Delta-G solvation = -3834.250733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.77953 -41.49955 -40.33772 -37.98948 -37.70218 -36.20194 -34.43449 -34.12835 -31.53617 -31.02268 -30.22289 -28.52993 -27.40642 -25.64433 -24.47654 -22.62418 -22.46200 -21.68910 -21.16921 -19.33883 -19.14772 -18.16102 -18.00786 -17.82758 -17.35757 -16.94459 -16.69993 -16.59700 -16.10426 -15.98151 -15.29245 -15.03724 -14.84061 -14.55302 -14.52371 -14.17612 -14.02584 -13.95809 -13.88967 -13.69303 -13.10919 -12.95027 -12.69778 -12.61499 -12.27662 -12.25401 -12.13078 -12.02806 -11.83445 -11.53861 -10.94957 -10.84099 -10.81944 -9.95051 -9.31254 -8.75424 -8.30919 -6.47421 -0.46910 0.63529 0.83239 1.02049 1.43678 1.46724 1.51785 1.55083 1.60476 1.89620 2.31142 2.51156 2.92641 3.04324 3.38743 3.60063 3.68440 3.80313 3.99370 4.00831 4.06668 4.22952 4.32362 4.41455 4.43857 4.53979 4.74279 4.76817 4.84461 4.96188 5.07325 5.09236 5.20579 5.39527 5.49591 5.54384 5.60830 5.65508 5.67978 5.80625 5.98326 6.18881 6.38485 6.61046 6.74733 7.18270 7.32782 8.80716 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.002166 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.578891 B =12924.075223 C =13664.890564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.464 5.464 3 C -0.002 4.002 4 C 0.537 3.463 5 O -0.508 6.508 6 O -0.341 6.341 7 C 0.058 3.942 8 C 0.502 3.498 9 O -0.579 6.579 10 N -0.698 5.698 11 C 0.268 3.732 12 C -0.559 4.559 13 H 0.086 0.914 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.262 1.262 20 C -0.090 4.090 21 C -0.147 4.147 22 C -0.062 4.062 23 C -0.151 4.151 24 C -0.077 4.077 25 C -0.148 4.148 26 C 0.101 3.899 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.412 0.588 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.269 0.731 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.392 -16.248 0.201 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.146 5.146 3 C -0.108 4.108 4 C 0.382 3.618 5 O -0.397 6.397 6 O -0.257 6.257 7 C -0.018 4.018 8 C 0.287 3.713 9 O -0.460 6.460 10 N -0.350 5.350 11 C 0.146 3.854 12 C -0.596 4.596 13 H 0.104 0.896 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.807 3.193 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.096 4.096 25 C -0.168 4.168 26 C -0.009 4.009 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.249 0.751 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.190 0.810 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 21.505 -16.594 0.199 27.163 hybrid contribution -0.872 1.398 -0.034 1.648 sum 20.632 -15.196 0.166 25.625 Atomic orbital electron populations 1.22241 0.74781 1.05473 1.04132 1.44238 1.06810 1.03518 1.60040 1.19116 0.91302 0.83603 1.16801 1.20129 0.80336 0.88445 0.72841 1.90882 1.56094 1.45527 1.47187 1.86667 1.25120 1.29839 1.84052 1.22845 0.91273 0.80229 1.07478 1.20563 0.89929 0.83899 0.76879 1.90671 1.67272 1.36600 1.51432 1.46040 1.09003 1.07486 1.72454 1.18615 0.75252 0.96926 0.94629 1.21585 0.93235 0.91656 1.53158 0.89637 1.26039 0.96326 1.03297 0.93854 1.70122 1.01578 1.35280 1.49749 0.85215 0.76882 0.77704 0.79472 1.18725 1.21175 1.18705 1.21156 0.94270 0.94462 1.01823 1.18425 0.93366 0.93133 1.10196 1.20734 0.98333 0.92256 0.96748 1.21066 0.97456 0.95614 1.02786 1.21354 0.91866 1.00322 0.96072 1.20409 1.01364 0.88266 1.06793 1.18824 0.90035 0.89092 1.02970 0.90679 0.87798 0.89560 0.85529 0.85557 0.75118 0.98894 0.98883 0.92205 0.81037 0.83494 0.82812 0.82545 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 10.49 127.77 1.34 3.08 16 2 N -0.46 -11.63 3.22 -526.34 -1.70 -13.33 16 3 C 0.00 -0.05 6.81 39.88 0.27 0.22 16 4 C 0.54 15.48 7.93 70.09 0.56 16.03 16 5 O -0.51 -15.40 16.63 19.59 0.33 -15.07 16 6 O -0.34 -10.45 7.08 -51.26 -0.36 -10.81 16 7 C 0.06 1.64 5.96 71.24 0.42 2.06 16 8 C 0.50 19.34 7.91 87.66 0.69 20.03 16 9 O -0.58 -27.60 16.50 15.76 0.26 -27.34 16 10 N -0.70 -28.06 5.55 -466.79 -2.59 -30.65 16 11 C 0.27 14.19 5.43 85.63 0.46 14.65 16 12 C -0.56 -29.50 9.28 25.60 0.24 -29.26 16 13 H 0.09 4.05 7.60 -2.91 -0.02 4.02 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 16 Si 0.98 41.51 29.54 68.60 2.03 43.54 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 C -0.09 -2.06 10.53 22.56 0.24 -1.83 16 21 C -0.15 -3.11 6.16 -21.36 -0.13 -3.24 16 22 C -0.06 -0.94 10.06 22.30 0.22 -0.71 16 23 C -0.15 -1.78 9.97 22.02 0.22 -1.56 16 24 C -0.08 -0.95 10.01 22.30 0.22 -0.73 16 25 C -0.15 -2.51 9.98 22.37 0.22 -2.28 16 26 C 0.10 2.25 6.81 39.14 0.27 2.52 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.10 1.89 8.12 -2.39 -0.02 1.87 16 29 H 0.09 2.45 6.09 -2.39 -0.01 2.43 16 30 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 31 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.41 13.34 8.32 -92.71 -0.77 12.57 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 36 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -73.68 355.33 4.27 -69.41 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.31 Total: 19.14 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 5.71 Total: 19.72 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.00 Total: -98.58 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: 0.22 Total: -53.22 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -73.68 4.27 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052241402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.618 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds