Wall clock time and date at job start Tue Mar 31 2020 10:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 O 1.45201 * 109.47085 * 119.99567 * 2 1 3 5 5 C 1.34705 * 117.00673 * 269.99908 * 4 2 1 6 6 O 1.21463 * 119.99671 * 0.02562 * 5 4 2 7 7 C 1.47794 * 120.00655 * 179.97438 * 5 4 2 8 8 C 1.39671 * 120.00296 * 179.97438 * 7 5 4 9 9 C 1.37719 * 120.00342 * 180.02562 * 8 7 5 10 10 C 1.39678 * 119.99732 * 0.02562 * 9 8 7 11 11 C 1.43200 * 119.99952 * 179.97438 * 10 9 8 12 12 N 9.00971 * 109.18341 * 109.45380 * 2 1 3 13 13 C 1.39677 * 119.99834 * 0.25162 * 10 9 8 14 14 C 1.37717 * 120.00137 * 359.48661 * 13 10 9 15 15 C 1.50696 * 109.47580 * 239.99770 * 2 1 3 16 16 O 1.21277 * 120.00317 * 248.57421 * 15 2 1 17 17 N 1.34776 * 119.99664 * 68.56377 * 15 2 1 18 18 C 1.46496 * 120.00317 * 4.59189 * 17 15 2 19 19 C 1.46502 * 119.99920 * 184.58711 * 17 15 2 20 20 C 1.50704 * 109.47155 * 90.00050 * 19 17 15 21 21 H 1.08001 * 119.99479 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99516 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00405 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.46967 * 89.99291 * 24 22 20 26 26 H 1.48497 * 109.47392 * 209.99676 * 24 22 20 27 27 H 1.48501 * 109.46858 * 329.99944 * 24 22 20 28 28 H 1.09000 * 109.47080 * 307.15115 * 1 2 3 29 29 H 1.08994 * 109.47366 * 67.15217 * 1 2 3 30 30 H 1.08998 * 109.47420 * 187.15501 * 1 2 3 31 31 H 1.08005 * 119.99818 * 0.02562 * 8 7 5 32 32 H 1.07998 * 120.00266 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.00305 * 179.72383 * 13 10 9 34 34 H 1.08001 * 120.00101 * 180.23653 * 14 13 10 35 35 H 1.08998 * 109.47412 * 86.11471 * 18 17 15 36 36 H 1.09002 * 109.47215 * 206.11757 * 18 17 15 37 37 H 1.09007 * 109.46905 * 326.11711 * 18 17 15 38 38 H 1.09002 * 109.47538 * 210.00371 * 19 17 15 39 39 H 1.09003 * 109.47444 * 330.00516 * 19 17 15 40 40 H 0.97004 * 120.00176 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2178 0.0667 2.2851 6 8 1.9969 1.2607 2.2544 7 6 2.7093 -0.5621 3.5290 8 6 2.9212 0.2169 4.6688 9 6 3.3796 -0.3689 5.8279 10 6 3.6332 -1.7420 5.8633 11 6 4.1103 -2.3511 7.0683 12 7 4.4905 -2.8340 8.0236 13 6 3.4267 -2.5200 4.7218 14 6 2.9632 -1.9351 3.5644 15 6 2.0324 -0.7104 -1.2304 16 8 2.5963 -1.7790 -1.1258 17 7 1.8549 -0.1583 -2.4470 18 6 1.2645 1.1771 -2.5663 19 6 2.2524 -0.8936 -3.6501 20 6 1.0934 -1.7250 -4.1366 21 1 0.1545 -1.7071 -3.6031 22 6 1.2314 -2.5076 -5.2633 23 7 0.2198 -3.2328 -5.6881 24 14 2.8550 -2.5380 -6.1864 25 1 3.7173 -3.6143 -5.6358 26 1 2.6009 -2.7954 -7.6267 27 1 3.5377 -1.2285 -6.0304 28 1 -0.3633 0.6206 0.8191 29 1 -0.3634 0.3990 -0.9470 30 1 -0.3634 -1.0196 0.1280 31 1 2.7255 1.2787 4.6413 32 1 3.5439 0.2335 6.7091 33 1 3.6270 -3.5810 4.7479 34 1 2.8000 -2.5373 2.6829 35 1 2.0472 1.9301 -2.4733 36 1 0.7800 1.2748 -3.5378 37 1 0.5270 1.3203 -1.7764 38 1 2.5447 -0.1876 -4.4275 39 1 3.0941 -1.5454 -3.4162 40 1 0.3169 -3.7837 -6.4805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:18 Heat of formation + Delta-G solvation = -47.720769 kcal Electronic energy + Delta-G solvation = -25063.229171 eV Core-core repulsion = 21230.292596 eV Total energy + Delta-G solvation = -3832.936575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01075 -39.75691 -38.92237 -36.90398 -36.48960 -35.09058 -32.94639 -32.36614 -31.70177 -31.43864 -28.39093 -26.39640 -25.94296 -24.29283 -23.26600 -22.41701 -21.16927 -19.46902 -18.97689 -18.45467 -17.12991 -17.01868 -16.28745 -16.17754 -15.81265 -15.36683 -15.10327 -14.79868 -14.50349 -14.43208 -14.09637 -14.03720 -13.85983 -13.27833 -13.22491 -13.05909 -12.72124 -12.57677 -12.47144 -12.38361 -12.28939 -11.87857 -11.66444 -11.55414 -11.40483 -10.97102 -10.84436 -10.78336 -10.56340 -10.20366 -9.61216 -9.60791 -9.55788 -9.09886 -8.64524 -7.84638 -6.14465 -4.14196 -0.18902 0.78941 1.87963 2.17781 2.23446 2.70693 3.08539 3.25730 3.30873 3.31820 3.33853 3.38448 3.68862 4.26087 4.31814 4.34646 4.40985 4.67982 4.69425 4.85246 4.90638 4.99466 5.13873 5.18917 5.34757 5.42520 5.50056 5.61660 5.67523 5.69530 5.73979 5.82650 5.98916 6.15272 6.19799 6.24404 6.59538 6.85325 6.97372 7.17674 7.48681 7.53262 8.04543 8.38789 8.74381 8.88294 9.45083 10.98580 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.002640 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.034167 B =10602.849251 C =11396.913187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.319 6.319 5 C 0.505 3.495 6 O -0.502 6.502 7 C -0.092 4.092 8 C -0.056 4.056 9 C -0.084 4.084 10 C 0.003 3.997 11 C 0.252 3.748 12 N -0.407 5.407 13 C -0.082 4.082 14 C -0.058 4.058 15 C 0.512 3.488 16 O -0.520 6.520 17 N -0.591 5.591 18 C 0.066 3.934 19 C 0.216 3.784 20 C -0.532 4.532 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 9.594 18.904 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.124 0.876 4 O -0.233 6.233 5 C 0.349 3.651 6 O -0.391 6.391 7 C -0.094 4.094 8 C -0.075 4.075 9 C -0.105 4.105 10 C -0.001 4.001 11 C -0.064 4.064 12 N -0.082 5.082 13 C -0.102 4.102 14 C -0.076 4.076 15 C 0.297 3.703 16 O -0.395 6.395 17 N -0.324 5.324 18 C -0.077 4.077 19 C 0.096 3.904 20 C -0.571 4.571 21 H 0.094 0.906 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.305 8.485 20.217 22.344 hybrid contribution 0.454 0.230 -1.088 1.201 sum 4.759 8.715 19.129 21.553 Atomic orbital electron populations 1.22319 0.91810 1.04520 1.04265 1.22652 0.96196 0.97334 0.82248 0.87610 1.86655 1.76382 1.40890 1.19416 1.21177 0.74581 0.85124 0.84184 1.90825 1.48164 1.15778 1.84363 1.19374 1.03717 0.94505 0.91793 1.21212 0.94936 1.01024 0.90285 1.21109 0.98033 0.92598 0.98711 1.16235 1.02029 0.93450 0.88349 1.25655 0.93959 0.93773 0.93017 1.81285 1.08350 1.07871 1.10709 1.21240 0.97476 1.00672 0.90844 1.21625 0.93556 0.93630 0.98760 1.19749 0.80722 0.86047 0.83797 1.90695 1.41697 1.21347 1.85783 1.47722 1.61046 1.17377 1.06256 1.22020 0.97988 0.83655 1.04072 1.19745 0.97256 0.92235 0.81154 1.21302 0.98764 1.25739 1.11282 0.90625 1.24850 0.96511 0.94692 0.96892 1.69889 1.30852 1.28060 1.24528 0.86851 0.84355 0.79256 0.79242 1.19833 1.21024 1.19043 0.91077 0.88774 0.90374 0.83245 0.83917 0.83820 0.82542 0.93239 0.89888 0.91299 0.94842 0.94278 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.14 37.15 0.34 -1.89 16 2 C 0.07 1.11 2.17 -27.89 -0.06 1.05 16 3 H 0.11 1.42 6.73 -51.92 -0.35 1.07 16 4 O -0.32 -4.68 8.67 -47.14 -0.41 -5.09 16 5 C 0.51 6.28 7.87 34.64 0.27 6.55 16 6 O -0.50 -6.83 15.59 -19.24 -0.30 -7.13 16 7 C -0.09 -0.86 5.88 -104.92 -0.62 -1.48 16 8 C -0.06 -0.40 9.58 -39.24 -0.38 -0.77 16 9 C -0.08 -0.48 9.73 -39.23 -0.38 -0.86 16 10 C 0.00 0.02 5.73 -106.90 -0.61 -0.59 16 11 C 0.25 2.09 15.32 -22.48 -0.34 1.74 16 12 N -0.41 -4.38 18.54 41.83 0.78 -3.61 16 13 C -0.08 -0.54 9.73 -39.23 -0.38 -0.92 16 14 C -0.06 -0.48 9.60 -39.23 -0.38 -0.85 16 15 C 0.51 10.10 7.03 -10.99 -0.08 10.02 16 16 O -0.52 -12.38 16.08 -13.94 -0.22 -12.60 16 17 N -0.59 -11.56 2.86 -182.95 -0.52 -12.09 16 18 C 0.07 0.94 9.80 59.84 0.59 1.53 16 19 C 0.22 5.07 4.25 -5.19 -0.02 5.05 16 20 C -0.53 -14.69 9.94 -34.44 -0.34 -15.04 16 21 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 24 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.17 5.46 -51.93 -0.28 0.89 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.15 0.93 7.64 -52.48 -0.40 0.53 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.16 1.37 7.60 -52.49 -0.40 0.97 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 37 H 0.07 0.81 4.31 -51.93 -0.22 0.59 16 38 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 39 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -34.96 355.76 -6.21 -41.16 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.50 Total: -1.74 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -2.49 Total: 5.52 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.03 Total: -41.77 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.93 Total: -24.81 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.96 -6.21 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.559 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds