Wall clock time and date at job start Tue Mar 31 2020 10:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 O 1.45201 * 109.47085 * 119.99567 * 2 1 3 5 5 C 1.34705 * 117.00673 * 269.99908 * 4 2 1 6 6 O 1.21463 * 119.99671 * 0.02562 * 5 4 2 7 7 C 1.47794 * 120.00655 * 179.97438 * 5 4 2 8 8 C 1.39671 * 120.00296 * 179.97438 * 7 5 4 9 9 C 1.37719 * 120.00342 * 180.02562 * 8 7 5 10 10 C 1.39678 * 119.99732 * 0.02562 * 9 8 7 11 11 C 1.43200 * 119.99952 * 179.97438 * 10 9 8 12 12 N 9.00971 * 109.18341 * 109.45380 * 2 1 3 13 13 C 1.39677 * 119.99834 * 0.25162 * 10 9 8 14 14 C 1.37717 * 120.00137 * 359.48661 * 13 10 9 15 15 C 1.50696 * 109.47580 * 239.99770 * 2 1 3 16 16 O 1.21277 * 120.00317 * 248.57421 * 15 2 1 17 17 N 1.34776 * 119.99664 * 68.56377 * 15 2 1 18 18 C 1.46496 * 120.00317 * 4.59189 * 17 15 2 19 19 C 1.46502 * 119.99920 * 184.58711 * 17 15 2 20 20 C 1.50704 * 109.47155 * 90.00050 * 19 17 15 21 21 H 1.08001 * 119.99479 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99516 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00405 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.46967 * 89.99291 * 24 22 20 26 26 H 1.48497 * 109.47392 * 209.99676 * 24 22 20 27 27 H 1.48501 * 109.46858 * 329.99944 * 24 22 20 28 28 H 1.09000 * 109.47080 * 307.15115 * 1 2 3 29 29 H 1.08994 * 109.47366 * 67.15217 * 1 2 3 30 30 H 1.08998 * 109.47420 * 187.15501 * 1 2 3 31 31 H 1.08005 * 119.99818 * 0.02562 * 8 7 5 32 32 H 1.07998 * 120.00266 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.00305 * 179.72383 * 13 10 9 34 34 H 1.08001 * 120.00101 * 180.23653 * 14 13 10 35 35 H 1.08998 * 109.47412 * 86.11471 * 18 17 15 36 36 H 1.09002 * 109.47215 * 206.11757 * 18 17 15 37 37 H 1.09007 * 109.46905 * 326.11711 * 18 17 15 38 38 H 1.09002 * 109.47538 * 210.00371 * 19 17 15 39 39 H 1.09003 * 109.47444 * 330.00516 * 19 17 15 40 40 H 0.97004 * 120.00176 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2178 0.0667 2.2851 6 8 1.9969 1.2607 2.2544 7 6 2.7093 -0.5621 3.5290 8 6 2.9212 0.2169 4.6688 9 6 3.3796 -0.3689 5.8279 10 6 3.6332 -1.7420 5.8633 11 6 4.1103 -2.3511 7.0683 12 7 4.4905 -2.8340 8.0236 13 6 3.4267 -2.5200 4.7218 14 6 2.9632 -1.9351 3.5644 15 6 2.0324 -0.7104 -1.2304 16 8 2.5963 -1.7790 -1.1258 17 7 1.8549 -0.1583 -2.4470 18 6 1.2645 1.1771 -2.5663 19 6 2.2524 -0.8936 -3.6501 20 6 1.0934 -1.7250 -4.1366 21 1 0.1545 -1.7071 -3.6031 22 6 1.2314 -2.5076 -5.2633 23 7 0.2198 -3.2328 -5.6881 24 14 2.8550 -2.5380 -6.1864 25 1 3.7173 -3.6143 -5.6358 26 1 2.6009 -2.7954 -7.6267 27 1 3.5377 -1.2285 -6.0304 28 1 -0.3633 0.6206 0.8191 29 1 -0.3634 0.3990 -0.9470 30 1 -0.3634 -1.0196 0.1280 31 1 2.7255 1.2787 4.6413 32 1 3.5439 0.2335 6.7091 33 1 3.6270 -3.5810 4.7479 34 1 2.8000 -2.5373 2.6829 35 1 2.0472 1.9301 -2.4733 36 1 0.7800 1.2748 -3.5378 37 1 0.5270 1.3203 -1.7764 38 1 2.5447 -0.1876 -4.4275 39 1 3.0941 -1.5454 -3.4162 40 1 0.3169 -3.7837 -6.4805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052421552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:17 Heat of formation + Delta-G solvation = -68.727039 kcal Electronic energy + Delta-G solvation = -25064.140071 eV Core-core repulsion = 21230.292596 eV Total energy + Delta-G solvation = -3833.847475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01938 -40.81363 -40.00248 -37.77883 -37.44459 -36.72052 -34.82526 -33.47531 -32.53710 -32.20893 -30.18071 -27.69497 -26.81047 -25.65992 -24.15724 -23.64316 -22.23967 -20.41834 -20.06355 -19.42541 -19.11565 -18.29641 -17.58405 -17.24825 -17.05239 -16.35617 -16.26520 -16.05419 -15.67834 -15.23792 -15.11142 -14.88242 -14.73545 -14.61336 -14.33316 -14.16169 -13.95524 -13.73600 -13.69704 -13.46421 -13.35617 -13.22713 -13.14794 -12.86040 -12.49311 -12.35244 -12.18025 -11.99894 -11.93810 -11.78065 -11.71967 -10.81535 -10.66168 -10.20034 -10.14471 -9.47344 -8.32200 -6.37467 -0.85183 0.25548 1.07135 1.20098 1.35891 1.39309 1.47259 1.51654 1.57109 1.97210 2.32146 2.33475 2.67259 2.77273 3.02202 3.37162 3.43900 3.74738 3.80172 3.82424 3.84040 4.10242 4.23143 4.28015 4.53149 4.59485 4.61648 4.65187 4.78347 4.86525 4.93773 4.94325 4.95715 5.11002 5.15810 5.23169 5.25768 5.45051 5.54225 5.59036 6.23077 6.32653 6.46243 6.58401 6.64337 7.16148 7.30092 8.84176 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.002640 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.034167 B =10602.849251 C =11396.913187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.083 3.917 3 H 0.128 0.872 4 O -0.336 6.336 5 C 0.505 3.495 6 O -0.515 6.515 7 C -0.107 4.107 8 C -0.050 4.050 9 C -0.066 4.066 10 C 0.005 3.995 11 C 0.278 3.722 12 N -0.450 5.450 13 C -0.074 4.074 14 C -0.065 4.065 15 C 0.502 3.498 16 O -0.573 6.573 17 N -0.597 5.597 18 C 0.058 3.942 19 C 0.223 3.777 20 C -0.536 4.536 21 H 0.035 0.965 22 C 0.012 3.988 23 N -0.943 5.943 24 Si 0.945 3.055 25 H -0.277 1.277 26 H -0.277 1.277 27 H -0.237 1.237 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 11.825 20.056 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 H 0.146 0.854 4 O -0.252 6.252 5 C 0.351 3.649 6 O -0.405 6.405 7 C -0.109 4.109 8 C -0.068 4.068 9 C -0.086 4.086 10 C 0.002 3.998 11 C -0.037 4.037 12 N -0.126 5.126 13 C -0.094 4.094 14 C -0.083 4.083 15 C 0.289 3.711 16 O -0.452 6.452 17 N -0.329 5.329 18 C -0.083 4.083 19 C 0.101 3.899 20 C -0.574 4.574 21 H 0.053 0.947 22 C -0.186 4.186 23 N -0.583 5.583 24 Si 0.768 3.232 25 H -0.203 1.203 26 H -0.202 1.202 27 H -0.160 1.160 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.413 10.778 21.386 24.552 hybrid contribution 0.032 -0.458 -1.361 1.437 sum 5.444 10.320 20.025 23.176 Atomic orbital electron populations 1.22309 0.90256 1.04182 1.05578 1.22517 0.97085 0.97266 0.80609 0.85413 1.86669 1.76816 1.41768 1.19900 1.21670 0.74001 0.85018 0.84196 1.90804 1.48996 1.16166 1.84522 1.19387 1.05242 0.95072 0.91221 1.21338 0.94420 1.01398 0.89681 1.21370 0.96013 0.92199 0.99066 1.16262 1.02078 0.93931 0.87568 1.25712 0.92754 0.92676 0.92575 1.81323 1.09933 1.09212 1.12124 1.21334 0.96463 1.01498 0.90113 1.21528 0.94415 0.93342 0.99048 1.20617 0.79678 0.85621 0.85154 1.90655 1.44053 1.23782 1.86751 1.47802 1.60972 1.18912 1.05245 1.22352 0.99566 0.81478 1.04931 1.19439 0.94866 0.92382 0.83246 1.21531 0.98592 1.26436 1.10890 0.94712 1.25810 1.00490 0.94215 0.98076 1.70039 1.33432 1.29359 1.25459 0.85760 0.79349 0.80398 0.77732 1.20285 1.20197 1.15996 0.88436 0.88283 0.91974 0.82094 0.80993 0.82270 0.83719 0.89945 0.90256 0.88801 0.92586 0.96063 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.14 71.98 0.66 -3.46 16 2 C 0.08 2.43 2.17 29.84 0.06 2.50 16 3 H 0.13 3.15 6.73 -2.38 -0.02 3.13 16 4 O -0.34 -9.81 8.67 -49.80 -0.43 -10.24 16 5 C 0.51 12.02 7.87 70.35 0.55 12.57 16 6 O -0.51 -13.01 15.59 19.96 0.31 -12.70 16 7 C -0.11 -1.86 5.88 -20.06 -0.12 -1.98 16 8 C -0.05 -0.58 9.58 22.49 0.22 -0.37 16 9 C -0.07 -0.54 9.73 22.49 0.22 -0.32 16 10 C 0.01 0.05 5.73 -21.34 -0.12 -0.07 16 11 C 0.28 4.07 15.32 88.33 1.35 5.42 16 12 N -0.45 -9.14 18.54 19.00 0.35 -8.79 16 13 C -0.07 -0.86 9.73 22.49 0.22 -0.64 16 14 C -0.07 -1.03 9.60 22.49 0.22 -0.81 16 15 C 0.50 19.94 7.03 87.66 0.62 20.56 16 16 O -0.57 -28.24 16.08 15.63 0.25 -27.99 16 17 N -0.60 -23.08 2.86 -851.13 -2.43 -25.51 16 18 C 0.06 1.53 9.80 127.77 1.25 2.78 16 19 C 0.22 10.40 4.25 85.63 0.36 10.77 16 20 C -0.54 -30.34 9.94 25.60 0.25 -30.09 16 21 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 22 C 0.01 0.71 5.47 84.65 0.46 1.18 16 23 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 24 Si 0.94 43.20 27.47 68.60 1.88 45.08 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 2.33 5.46 -2.39 -0.01 2.31 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.16 1.52 7.64 -2.91 -0.02 1.50 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.15 2.63 7.60 -2.91 -0.02 2.61 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.09 1.98 4.31 -2.38 -0.01 1.97 16 38 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 39 H 0.02 1.07 6.79 -2.39 -0.02 1.06 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -79.24 355.76 7.47 -71.76 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.03 Total: 8.26 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.21 Total: 18.03 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -1.78 Total: -92.20 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: 0.13 Total: -50.93 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Total: -79.24 7.47 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.037 kcal (2) G-P(sol) polarization free energy of solvation -79.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds