Wall clock time and date at job start Tue Mar 31 2020 10:58:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09008 * 109.47252 * 2 1
4 4 O 1.45201 * 109.47085 * 119.99567 * 2 1 3
5 5 C 1.34705 * 117.00673 * 269.99908 * 4 2 1
6 6 O 1.21463 * 119.99671 * 0.02562 * 5 4 2
7 7 C 1.47794 * 120.00655 * 179.97438 * 5 4 2
8 8 C 1.39671 * 120.00296 * 179.97438 * 7 5 4
9 9 C 1.37719 * 120.00342 * 180.02562 * 8 7 5
10 10 C 1.39678 * 119.99732 * 0.02562 * 9 8 7
11 11 C 1.43200 * 119.99952 * 179.97438 * 10 9 8
12 12 N 9.00971 * 109.18341 * 109.45380 * 2 1 3
13 13 C 1.39677 * 119.99834 * 0.25162 * 10 9 8
14 14 C 1.37717 * 120.00137 * 359.48661 * 13 10 9
15 15 C 1.50696 * 109.47580 * 239.99770 * 2 1 3
16 16 O 1.21277 * 120.00317 * 248.57421 * 15 2 1
17 17 N 1.34776 * 119.99664 * 68.56377 * 15 2 1
18 18 C 1.46496 * 120.00317 * 4.59189 * 17 15 2
19 19 C 1.46502 * 119.99920 * 184.58711 * 17 15 2
20 20 C 1.50704 * 109.47155 * 90.00050 * 19 17 15
21 21 H 1.08001 * 119.99479 * 0.02562 * 20 19 17
22 22 C 1.37876 * 119.99909 * 179.97438 * 20 19 17
23 23 N 1.31512 * 119.99516 * 180.02562 * 22 20 19
24 24 Si 1.86797 * 120.00405 * 0.02562 * 22 20 19
25 25 H 1.48494 * 109.46967 * 89.99291 * 24 22 20
26 26 H 1.48497 * 109.47392 * 209.99676 * 24 22 20
27 27 H 1.48501 * 109.46858 * 329.99944 * 24 22 20
28 28 H 1.09000 * 109.47080 * 307.15115 * 1 2 3
29 29 H 1.08994 * 109.47366 * 67.15217 * 1 2 3
30 30 H 1.08998 * 109.47420 * 187.15501 * 1 2 3
31 31 H 1.08005 * 119.99818 * 0.02562 * 8 7 5
32 32 H 1.07998 * 120.00266 * 179.97438 * 9 8 7
33 33 H 1.08001 * 120.00305 * 179.72383 * 13 10 9
34 34 H 1.08001 * 120.00101 * 180.23653 * 14 13 10
35 35 H 1.08998 * 109.47412 * 86.11471 * 18 17 15
36 36 H 1.09002 * 109.47215 * 206.11757 * 18 17 15
37 37 H 1.09007 * 109.46905 * 326.11711 * 18 17 15
38 38 H 1.09002 * 109.47538 * 210.00371 * 19 17 15
39 39 H 1.09003 * 109.47444 * 330.00516 * 19 17 15
40 40 H 0.97004 * 120.00176 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0139 -0.6844 1.1856
5 6 2.2178 0.0667 2.2851
6 8 1.9969 1.2607 2.2544
7 6 2.7093 -0.5621 3.5290
8 6 2.9212 0.2169 4.6688
9 6 3.3796 -0.3689 5.8279
10 6 3.6332 -1.7420 5.8633
11 6 4.1103 -2.3511 7.0683
12 7 4.4905 -2.8340 8.0236
13 6 3.4267 -2.5200 4.7218
14 6 2.9632 -1.9351 3.5644
15 6 2.0324 -0.7104 -1.2304
16 8 2.5963 -1.7790 -1.1258
17 7 1.8549 -0.1583 -2.4470
18 6 1.2645 1.1771 -2.5663
19 6 2.2524 -0.8936 -3.6501
20 6 1.0934 -1.7250 -4.1366
21 1 0.1545 -1.7071 -3.6031
22 6 1.2314 -2.5076 -5.2633
23 7 0.2198 -3.2328 -5.6881
24 14 2.8550 -2.5380 -6.1864
25 1 3.7173 -3.6143 -5.6358
26 1 2.6009 -2.7954 -7.6267
27 1 3.5377 -1.2285 -6.0304
28 1 -0.3633 0.6206 0.8191
29 1 -0.3634 0.3990 -0.9470
30 1 -0.3634 -1.0196 0.1280
31 1 2.7255 1.2787 4.6413
32 1 3.5439 0.2335 6.7091
33 1 3.6270 -3.5810 4.7479
34 1 2.8000 -2.5373 2.6829
35 1 2.0472 1.9301 -2.4733
36 1 0.7800 1.2748 -3.5378
37 1 0.5270 1.3203 -1.7764
38 1 2.5447 -0.1876 -4.4275
39 1 3.0941 -1.5454 -3.4162
40 1 0.3169 -3.7837 -6.4805
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000052421552.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:17
Heat of formation + Delta-G solvation = -68.727039 kcal
Electronic energy + Delta-G solvation = -25064.140071 eV
Core-core repulsion = 21230.292596 eV
Total energy + Delta-G solvation = -3833.847475 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.01938 -40.81363 -40.00248 -37.77883 -37.44459 -36.72052 -34.82526 -33.47531
-32.53710 -32.20893 -30.18071 -27.69497 -26.81047 -25.65992 -24.15724 -23.64316
-22.23967 -20.41834 -20.06355 -19.42541 -19.11565 -18.29641 -17.58405 -17.24825
-17.05239 -16.35617 -16.26520 -16.05419 -15.67834 -15.23792 -15.11142 -14.88242
-14.73545 -14.61336 -14.33316 -14.16169 -13.95524 -13.73600 -13.69704 -13.46421
-13.35617 -13.22713 -13.14794 -12.86040 -12.49311 -12.35244 -12.18025 -11.99894
-11.93810 -11.78065 -11.71967 -10.81535 -10.66168 -10.20034 -10.14471 -9.47344
-8.32200 -6.37467 -0.85183 0.25548 1.07135 1.20098 1.35891 1.39309
1.47259 1.51654 1.57109 1.97210 2.32146 2.33475 2.67259 2.77273
3.02202 3.37162 3.43900 3.74738 3.80172 3.82424 3.84040 4.10242
4.23143 4.28015 4.53149 4.59485 4.61648 4.65187 4.78347 4.86525
4.93773 4.94325 4.95715 5.11002 5.15810 5.23169 5.25768 5.45051
5.54225 5.59036 6.23077 6.32653 6.46243 6.58401 6.64337 7.16148
7.30092 8.84176
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.021126 B = 0.002640 C = 0.002456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.034167 B =10602.849251 C =11396.913187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.083 3.917
3 H 0.128 0.872
4 O -0.336 6.336
5 C 0.505 3.495
6 O -0.515 6.515
7 C -0.107 4.107
8 C -0.050 4.050
9 C -0.066 4.066
10 C 0.005 3.995
11 C 0.278 3.722
12 N -0.450 5.450
13 C -0.074 4.074
14 C -0.065 4.065
15 C 0.502 3.498
16 O -0.573 6.573
17 N -0.597 5.597
18 C 0.058 3.942
19 C 0.223 3.777
20 C -0.536 4.536
21 H 0.035 0.965
22 C 0.012 3.988
23 N -0.943 5.943
24 Si 0.945 3.055
25 H -0.277 1.277
26 H -0.277 1.277
27 H -0.237 1.237
28 H 0.097 0.903
29 H 0.099 0.901
30 H 0.061 0.939
31 H 0.162 0.838
32 H 0.173 0.827
33 H 0.160 0.840
34 H 0.145 0.855
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.094 0.906
38 H 0.056 0.944
39 H 0.021 0.979
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.666 11.825 20.056 23.745
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.025 3.975
3 H 0.146 0.854
4 O -0.252 6.252
5 C 0.351 3.649
6 O -0.405 6.405
7 C -0.109 4.109
8 C -0.068 4.068
9 C -0.086 4.086
10 C 0.002 3.998
11 C -0.037 4.037
12 N -0.126 5.126
13 C -0.094 4.094
14 C -0.083 4.083
15 C 0.289 3.711
16 O -0.452 6.452
17 N -0.329 5.329
18 C -0.083 4.083
19 C 0.101 3.899
20 C -0.574 4.574
21 H 0.053 0.947
22 C -0.186 4.186
23 N -0.583 5.583
24 Si 0.768 3.232
25 H -0.203 1.203
26 H -0.202 1.202
27 H -0.160 1.160
28 H 0.116 0.884
29 H 0.117 0.883
30 H 0.080 0.920
31 H 0.179 0.821
32 H 0.190 0.810
33 H 0.177 0.823
34 H 0.163 0.837
35 H 0.101 0.899
36 H 0.097 0.903
37 H 0.112 0.888
38 H 0.074 0.926
39 H 0.039 0.961
40 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 5.413 10.778 21.386 24.552
hybrid contribution 0.032 -0.458 -1.361 1.437
sum 5.444 10.320 20.025 23.176
Atomic orbital electron populations
1.22309 0.90256 1.04182 1.05578 1.22517 0.97085 0.97266 0.80609
0.85413 1.86669 1.76816 1.41768 1.19900 1.21670 0.74001 0.85018
0.84196 1.90804 1.48996 1.16166 1.84522 1.19387 1.05242 0.95072
0.91221 1.21338 0.94420 1.01398 0.89681 1.21370 0.96013 0.92199
0.99066 1.16262 1.02078 0.93931 0.87568 1.25712 0.92754 0.92676
0.92575 1.81323 1.09933 1.09212 1.12124 1.21334 0.96463 1.01498
0.90113 1.21528 0.94415 0.93342 0.99048 1.20617 0.79678 0.85621
0.85154 1.90655 1.44053 1.23782 1.86751 1.47802 1.60972 1.18912
1.05245 1.22352 0.99566 0.81478 1.04931 1.19439 0.94866 0.92382
0.83246 1.21531 0.98592 1.26436 1.10890 0.94712 1.25810 1.00490
0.94215 0.98076 1.70039 1.33432 1.29359 1.25459 0.85760 0.79349
0.80398 0.77732 1.20285 1.20197 1.15996 0.88436 0.88283 0.91974
0.82094 0.80993 0.82270 0.83719 0.89945 0.90256 0.88801 0.92586
0.96063 0.92283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.12 9.14 71.98 0.66 -3.46 16
2 C 0.08 2.43 2.17 29.84 0.06 2.50 16
3 H 0.13 3.15 6.73 -2.38 -0.02 3.13 16
4 O -0.34 -9.81 8.67 -49.80 -0.43 -10.24 16
5 C 0.51 12.02 7.87 70.35 0.55 12.57 16
6 O -0.51 -13.01 15.59 19.96 0.31 -12.70 16
7 C -0.11 -1.86 5.88 -20.06 -0.12 -1.98 16
8 C -0.05 -0.58 9.58 22.49 0.22 -0.37 16
9 C -0.07 -0.54 9.73 22.49 0.22 -0.32 16
10 C 0.01 0.05 5.73 -21.34 -0.12 -0.07 16
11 C 0.28 4.07 15.32 88.33 1.35 5.42 16
12 N -0.45 -9.14 18.54 19.00 0.35 -8.79 16
13 C -0.07 -0.86 9.73 22.49 0.22 -0.64 16
14 C -0.07 -1.03 9.60 22.49 0.22 -0.81 16
15 C 0.50 19.94 7.03 87.66 0.62 20.56 16
16 O -0.57 -28.24 16.08 15.63 0.25 -27.99 16
17 N -0.60 -23.08 2.86 -851.13 -2.43 -25.51 16
18 C 0.06 1.53 9.80 127.77 1.25 2.78 16
19 C 0.22 10.40 4.25 85.63 0.36 10.77 16
20 C -0.54 -30.34 9.94 25.60 0.25 -30.09 16
21 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16
22 C 0.01 0.71 5.47 84.65 0.46 1.18 16
23 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16
24 Si 0.94 43.20 27.47 68.60 1.88 45.08 16
25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16
27 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16
28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16
29 H 0.10 2.33 5.46 -2.39 -0.01 2.31 16
30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
31 H 0.16 1.52 7.64 -2.91 -0.02 1.50 16
32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16
33 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16
34 H 0.15 2.63 7.60 -2.91 -0.02 2.61 16
35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
36 H 0.08 2.16 8.04 -2.39 -0.02 2.14 16
37 H 0.09 1.98 4.31 -2.38 -0.01 1.97 16
38 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16
39 H 0.02 1.07 6.79 -2.39 -0.02 1.06 16
40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
Total: -1.00 -79.24 355.76 7.47 -71.76
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: 1.03 Total: 8.26 kcal
Atomic # 6 Polarization: 11.82 SS G_CDS: 6.21 Total: 18.03 kcal
Atomic # 7 Polarization: -90.42 SS G_CDS: -1.78 Total: -92.20 kcal
Atomic # 8 Polarization: -51.06 SS G_CDS: 0.13 Total: -50.93 kcal
Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal
Total: -79.24 7.47 -71.76 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000052421552.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.037 kcal
(2) G-P(sol) polarization free energy of solvation -79.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.200 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds