Wall clock time and date at job start Tue Mar 31 2020 10:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47426 * 2 1 4 4 C 1.50699 * 109.47082 * 120.00162 * 2 1 3 5 5 O 1.21278 * 120.00406 * 120.00081 * 4 2 1 6 6 N 1.34783 * 120.00040 * 299.99797 * 4 2 1 7 7 C 1.39236 * 120.00430 * 176.69098 * 6 4 2 8 8 C 1.39480 * 119.83613 * 217.49823 * 7 6 4 9 9 C 1.36375 * 120.16684 * 179.76094 * 8 7 6 10 10 C 1.40867 * 119.82860 * 0.50949 * 9 8 7 11 11 C 1.41154 * 120.16141 * 179.72283 * 10 9 8 12 12 H 1.08003 * 119.99780 * 158.00589 * 11 10 9 13 13 C 1.39904 * 119.99835 * 338.00214 * 11 10 9 14 14 N 1.30873 * 120.00385 * 327.57890 * 13 11 10 15 15 Si 1.86801 * 119.99802 * 147.58365 * 13 11 10 16 16 H 1.48501 * 109.47149 * 94.98718 * 15 13 11 17 17 H 1.48498 * 109.47186 * 214.98255 * 15 13 11 18 18 H 1.48506 * 109.47220 * 334.98611 * 15 13 11 19 19 C 1.40862 * 119.67445 * 359.74169 * 10 9 8 20 20 C 1.36384 * 119.82984 * 0.02562 * 19 10 9 21 21 N 1.46502 * 109.47553 * 240.00183 * 2 1 3 22 22 C 1.33870 * 122.76561 * 119.99873 * 21 2 1 23 23 O 1.21222 * 125.39339 * 359.97438 * 22 21 2 24 24 C 1.51318 * 109.20632 * 179.97438 * 22 21 2 25 25 C 1.54224 * 103.69407 * 359.92537 * 24 22 21 26 26 C 1.33876 * 122.75670 * 299.99928 * 21 2 1 27 27 O 1.21227 * 125.40136 * 0.02562 * 26 21 2 28 28 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47575 * 300.00125 * 1 2 3 30 30 H 1.09003 * 109.46918 * 60.00238 * 1 2 3 31 31 H 0.97002 * 119.99706 * 356.69650 * 6 4 2 32 32 H 1.07996 * 119.91239 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.08133 * 180.25475 * 9 8 7 34 34 H 0.96995 * 120.00001 * 180.02562 * 14 13 11 35 35 H 1.07998 * 120.08773 * 179.97438 * 19 10 9 36 36 H 1.07996 * 119.91896 * 179.97438 * 20 19 10 37 37 H 1.09000 * 110.60006 * 118.51877 * 24 22 21 38 38 H 1.08998 * 110.60348 * 241.32463 * 24 22 21 39 39 H 1.09004 * 110.60789 * 118.59622 * 25 24 22 40 40 H 1.09000 * 110.60240 * 241.55769 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1128 -0.9450 3.5907 8 6 1.2631 -1.0290 4.6936 9 6 1.6522 -1.7121 5.8080 10 6 2.9201 -2.3247 5.8473 11 6 3.3322 -3.0286 6.9993 12 1 4.1074 -3.7771 6.9263 13 6 2.7366 -2.7566 8.2357 14 7 2.3208 -1.5463 8.5096 15 14 2.5348 -4.1210 9.4955 16 1 3.6799 -4.0951 10.4408 17 1 1.2692 -3.9190 10.2456 18 1 2.4952 -5.4335 8.8018 19 6 3.7747 -2.2311 4.7315 20 6 3.3699 -1.5485 3.6223 21 7 2.0184 -0.6906 -1.1962 22 6 2.7905 -0.0939 -2.1126 23 8 3.1702 1.0565 -2.0694 24 6 3.1143 -1.0832 -3.2110 25 6 2.3904 -2.3708 -2.7677 26 6 1.7292 -1.9703 -1.4627 27 8 1.0480 -2.6953 -0.7699 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1893 0.5656 2.5442 32 1 0.2930 -0.5554 4.6633 33 1 0.9915 -1.7798 6.6596 34 1 1.9081 -1.3577 9.3669 35 1 4.7483 -2.6978 4.7546 36 1 4.0242 -1.4755 2.7662 37 1 2.7256 -0.7346 -4.1678 38 1 4.1897 -1.2494 -3.2727 39 1 1.6417 -2.6629 -3.5040 40 1 3.1061 -3.1769 -2.6062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073697046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:15 Heat of formation + Delta-G solvation = -72.989521 kcal Electronic energy + Delta-G solvation = -25966.940941 eV Core-core repulsion = 22132.908630 eV Total energy + Delta-G solvation = -3834.032310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14543 -39.56223 -38.60352 -37.28410 -35.89947 -34.51236 -34.41906 -33.04217 -30.62623 -29.55411 -28.86860 -26.32579 -25.51025 -24.31727 -22.55816 -21.87334 -21.00902 -20.10060 -19.12904 -17.75643 -17.43893 -17.21038 -16.77803 -16.19776 -15.95538 -15.22281 -14.88970 -14.83107 -14.31466 -14.16535 -14.03316 -14.00137 -13.71916 -13.27113 -13.12100 -12.74727 -12.61703 -12.42603 -12.08905 -12.04237 -11.95120 -11.60829 -11.41282 -11.16087 -10.95717 -10.66440 -10.54319 -10.30825 -10.07017 -10.03908 -9.75815 -9.39243 -9.04043 -8.70866 -7.55822 -7.16915 -6.90026 -4.28430 1.43625 2.22399 2.53352 2.63324 2.92205 3.04640 3.08769 3.11221 3.28474 3.65244 3.88473 3.89357 4.02680 4.20917 4.48314 4.56780 4.77028 4.78659 4.86544 5.12054 5.15527 5.31943 5.36082 5.44612 5.60081 5.67357 5.89685 6.17872 6.40015 6.70465 6.73979 6.92185 6.98849 7.11944 7.20788 7.26909 7.54336 7.63055 7.70956 7.86776 8.00725 8.22569 8.24947 8.53176 8.69246 8.82899 8.97654 10.00825 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.002864 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.914629 B = 9772.592171 C = 9980.452668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 H 0.126 0.874 4 C 0.494 3.506 5 O -0.518 6.518 6 N -0.641 5.641 7 C -0.022 4.022 8 C -0.099 4.099 9 C -0.171 4.171 10 C 0.114 3.886 11 C -0.465 4.465 12 H 0.082 0.918 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.896 3.104 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.224 4.224 20 C -0.064 4.064 21 N -0.557 5.557 22 C 0.530 3.470 23 O -0.490 6.490 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.529 3.471 27 O -0.459 6.459 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.394 0.606 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.283 0.717 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 3.430 -18.799 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 H 0.144 0.856 4 C 0.278 3.722 5 O -0.393 6.393 6 N -0.285 5.285 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.191 4.191 10 C 0.111 3.889 11 C -0.492 4.492 12 H 0.100 0.900 13 C -0.134 4.134 14 N -0.391 5.391 15 Si 0.719 3.281 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.244 4.244 20 C -0.084 4.084 21 N -0.301 5.301 22 C 0.319 3.681 23 O -0.362 6.362 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.317 3.683 27 O -0.328 6.328 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.464 3.103 -18.281 18.864 hybrid contribution -0.368 0.004 0.837 0.915 sum -3.832 3.106 -17.444 18.129 Atomic orbital electron populations 1.22107 0.91379 1.04855 1.03536 1.21235 0.96861 0.98008 0.83622 0.85635 1.20302 0.82168 0.85195 0.84496 1.90700 1.37021 1.25656 1.85941 1.42775 1.54721 1.26595 1.04364 1.17013 0.96371 1.10400 0.87618 1.20152 0.96704 1.01035 0.94034 1.20616 0.97220 1.04122 0.97112 1.17589 0.90483 0.88819 0.91990 1.19517 1.19015 1.19040 0.91669 0.89988 1.25946 0.92586 0.95402 0.99429 1.69944 1.26656 1.19625 1.22910 0.86504 0.78686 0.82924 0.79939 1.19443 1.19866 1.18062 1.20584 0.99620 1.08402 0.95806 1.20266 0.93523 0.97655 0.96908 1.46467 1.47249 1.14449 1.21896 1.20836 0.75930 0.87949 0.83405 1.90769 1.51460 1.17021 1.76934 1.22442 1.04637 0.93506 0.98801 1.22514 1.01972 0.99355 0.95551 1.20767 0.79729 0.80361 0.87414 1.90795 1.35478 1.53994 1.52486 0.90098 0.89973 0.91184 0.77195 0.89221 0.87432 0.90574 0.88764 0.88215 0.86237 0.86111 0.86372 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.07 37.15 0.34 -1.41 16 2 C 0.11 1.45 3.11 -69.09 -0.22 1.24 16 3 H 0.13 1.50 7.41 -51.93 -0.38 1.11 16 4 C 0.49 8.95 6.60 -10.98 -0.07 8.87 16 5 O -0.52 -11.43 12.42 -10.69 -0.13 -11.56 16 6 N -0.64 -11.61 5.17 -9.74 -0.05 -11.66 16 7 C -0.02 -0.51 6.25 -83.57 -0.52 -1.03 16 8 C -0.10 -2.30 9.90 -39.79 -0.39 -2.69 16 9 C -0.17 -4.42 8.74 -39.26 -0.34 -4.76 16 10 C 0.11 3.09 5.57 -106.80 -0.60 2.49 16 11 C -0.46 -12.41 8.94 -37.85 -0.34 -12.75 16 12 H 0.08 2.12 8.02 -52.48 -0.42 1.70 16 13 C 0.09 2.19 4.77 -17.34 -0.08 2.11 16 14 N -0.77 -19.46 11.78 55.55 0.65 -18.81 16 15 Si 0.90 18.32 29.66 -169.99 -5.04 13.28 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 C -0.22 -5.84 9.74 -39.26 -0.38 -6.22 16 20 C -0.06 -1.58 8.59 -39.79 -0.34 -1.92 16 21 N -0.56 -7.07 2.28 -109.34 -0.25 -7.32 16 22 C 0.53 5.91 8.08 -11.09 -0.09 5.82 16 23 O -0.49 -6.84 17.23 5.61 0.10 -6.74 16 24 C -0.15 -0.95 7.02 -26.94 -0.19 -1.14 16 25 C -0.15 -1.08 7.05 -26.76 -0.19 -1.27 16 26 C 0.53 6.82 6.71 -10.90 -0.07 6.75 16 27 O -0.46 -7.86 15.12 -10.64 -0.16 -8.02 16 28 H 0.08 1.07 6.64 -51.93 -0.34 0.72 16 29 H 0.08 0.76 7.64 -51.93 -0.40 0.36 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.39 5.57 8.34 -40.82 -0.34 5.23 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.11 2.81 6.52 -52.49 -0.34 2.46 16 34 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 35 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.10 2.45 6.45 -52.49 -0.34 2.11 16 37 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -34.77 341.27 -7.89 -42.66 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.66 Total: 8.94 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -3.49 Total: -5.92 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.35 Total: -37.79 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.20 Total: -26.32 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.77 -7.89 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073697046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.328 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds