Wall clock time and date at job start Tue Mar 31 2020 10:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47426 * 2 1 4 4 C 1.50699 * 109.47082 * 120.00162 * 2 1 3 5 5 O 1.21278 * 120.00406 * 120.00081 * 4 2 1 6 6 N 1.34783 * 120.00040 * 299.99797 * 4 2 1 7 7 C 1.39236 * 120.00430 * 176.69098 * 6 4 2 8 8 C 1.39480 * 119.83613 * 217.49823 * 7 6 4 9 9 C 1.36375 * 120.16684 * 179.76094 * 8 7 6 10 10 C 1.40867 * 119.82860 * 0.50949 * 9 8 7 11 11 C 1.41154 * 120.16141 * 179.72283 * 10 9 8 12 12 H 1.08003 * 119.99780 * 158.00589 * 11 10 9 13 13 C 1.39904 * 119.99835 * 338.00214 * 11 10 9 14 14 N 1.30873 * 120.00385 * 327.57890 * 13 11 10 15 15 Si 1.86801 * 119.99802 * 147.58365 * 13 11 10 16 16 H 1.48501 * 109.47149 * 94.98718 * 15 13 11 17 17 H 1.48498 * 109.47186 * 214.98255 * 15 13 11 18 18 H 1.48506 * 109.47220 * 334.98611 * 15 13 11 19 19 C 1.40862 * 119.67445 * 359.74169 * 10 9 8 20 20 C 1.36384 * 119.82984 * 0.02562 * 19 10 9 21 21 N 1.46502 * 109.47553 * 240.00183 * 2 1 3 22 22 C 1.33870 * 122.76561 * 119.99873 * 21 2 1 23 23 O 1.21222 * 125.39339 * 359.97438 * 22 21 2 24 24 C 1.51318 * 109.20632 * 179.97438 * 22 21 2 25 25 C 1.54224 * 103.69407 * 359.92537 * 24 22 21 26 26 C 1.33876 * 122.75670 * 299.99928 * 21 2 1 27 27 O 1.21227 * 125.40136 * 0.02562 * 26 21 2 28 28 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47575 * 300.00125 * 1 2 3 30 30 H 1.09003 * 109.46918 * 60.00238 * 1 2 3 31 31 H 0.97002 * 119.99706 * 356.69650 * 6 4 2 32 32 H 1.07996 * 119.91239 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.08133 * 180.25475 * 9 8 7 34 34 H 0.96995 * 120.00001 * 180.02562 * 14 13 11 35 35 H 1.07998 * 120.08773 * 179.97438 * 19 10 9 36 36 H 1.07996 * 119.91896 * 179.97438 * 20 19 10 37 37 H 1.09000 * 110.60006 * 118.51877 * 24 22 21 38 38 H 1.08998 * 110.60348 * 241.32463 * 24 22 21 39 39 H 1.09004 * 110.60789 * 118.59622 * 25 24 22 40 40 H 1.09000 * 110.60240 * 241.55769 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1128 -0.9450 3.5907 8 6 1.2631 -1.0290 4.6936 9 6 1.6522 -1.7121 5.8080 10 6 2.9201 -2.3247 5.8473 11 6 3.3322 -3.0286 6.9993 12 1 4.1074 -3.7771 6.9263 13 6 2.7366 -2.7566 8.2357 14 7 2.3208 -1.5463 8.5096 15 14 2.5348 -4.1210 9.4955 16 1 3.6799 -4.0951 10.4408 17 1 1.2692 -3.9190 10.2456 18 1 2.4952 -5.4335 8.8018 19 6 3.7747 -2.2311 4.7315 20 6 3.3699 -1.5485 3.6223 21 7 2.0184 -0.6906 -1.1962 22 6 2.7905 -0.0939 -2.1126 23 8 3.1702 1.0565 -2.0694 24 6 3.1143 -1.0832 -3.2110 25 6 2.3904 -2.3708 -2.7677 26 6 1.7292 -1.9703 -1.4627 27 8 1.0480 -2.6953 -0.7699 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1893 0.5656 2.5442 32 1 0.2930 -0.5554 4.6633 33 1 0.9915 -1.7798 6.6596 34 1 1.9081 -1.3577 9.3669 35 1 4.7483 -2.6978 4.7546 36 1 4.0242 -1.4755 2.7662 37 1 2.7256 -0.7346 -4.1678 38 1 4.1897 -1.2494 -3.2727 39 1 1.6417 -2.6629 -3.5040 40 1 3.1061 -3.1769 -2.6062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073697046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:14 Heat of formation + Delta-G solvation = -95.776949 kcal Electronic energy + Delta-G solvation = -25967.929078 eV Core-core repulsion = 22132.908630 eV Total energy + Delta-G solvation = -3835.020447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.08981 -41.08311 -39.62756 -39.08016 -36.93320 -36.26154 -35.44228 -34.72404 -31.72623 -31.44328 -30.58112 -27.14128 -27.06292 -25.63312 -23.63173 -23.33024 -22.76636 -21.64879 -20.31929 -19.35995 -18.93204 -18.29794 -17.84670 -17.58905 -17.09356 -17.02381 -16.28202 -15.92163 -15.78845 -15.39760 -15.25820 -14.95014 -14.86578 -14.59363 -14.51497 -14.05151 -13.98807 -13.81219 -13.64075 -13.33565 -13.26550 -12.96642 -12.87006 -12.70811 -12.36358 -12.09654 -11.95009 -11.63993 -11.55254 -11.39676 -11.10730 -11.00922 -10.67774 -10.45982 -9.53326 -9.07077 -8.77263 -6.27750 0.55238 0.75996 1.08522 1.30308 1.34255 1.39485 1.52167 1.67147 1.74330 2.17787 2.29863 2.60516 3.20809 3.28298 3.54968 3.64741 3.67617 3.76237 3.85681 4.14968 4.19413 4.34118 4.41315 4.58759 4.68248 4.75392 4.84284 4.90361 4.92576 5.01606 5.05329 5.09976 5.22456 5.37711 5.58732 5.80536 5.81721 5.96425 6.02986 6.30028 6.34625 6.54174 6.59890 6.78123 6.84669 6.93419 7.26984 8.17070 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.002864 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.914629 B = 9772.592171 C = 9980.452668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 H 0.143 0.857 4 C 0.490 3.510 5 O -0.561 6.561 6 N -0.635 5.635 7 C -0.011 4.011 8 C -0.097 4.097 9 C -0.189 4.189 10 C 0.086 3.914 11 C -0.504 4.504 12 H 0.075 0.925 13 C 0.052 3.948 14 N -0.796 5.796 15 Si 0.973 3.027 16 H -0.258 1.258 17 H -0.259 1.259 18 H -0.262 1.262 19 C -0.247 4.247 20 C -0.075 4.075 21 N -0.566 5.566 22 C 0.523 3.477 23 O -0.522 6.522 24 C -0.138 4.138 25 C -0.141 4.141 26 C 0.516 3.484 27 O -0.513 6.513 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.296 0.704 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 3.967 -20.604 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 H 0.160 0.840 4 C 0.277 3.723 5 O -0.439 6.439 6 N -0.281 5.281 7 C -0.104 4.104 8 C -0.117 4.117 9 C -0.209 4.209 10 C 0.083 3.917 11 C -0.532 4.532 12 H 0.093 0.907 13 C -0.168 4.168 14 N -0.419 5.419 15 Si 0.793 3.207 16 H -0.183 1.183 17 H -0.183 1.183 18 H -0.186 1.186 19 C -0.267 4.267 20 C -0.095 4.095 21 N -0.309 5.309 22 C 0.315 3.685 23 O -0.397 6.397 24 C -0.176 4.176 25 C -0.180 4.180 26 C 0.308 3.692 27 O -0.386 6.386 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.254 0.746 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.513 3.691 -20.128 20.955 hybrid contribution -0.026 -0.069 1.288 1.290 sum -4.540 3.622 -18.840 19.715 Atomic orbital electron populations 1.22094 0.89260 1.03887 1.05802 1.21258 0.98394 0.97951 0.81877 0.83990 1.21223 0.80836 0.84705 0.85565 1.90676 1.38794 1.27690 1.86706 1.42690 1.54899 1.27156 1.03326 1.17090 0.95330 1.09083 0.88906 1.20440 0.98021 1.00127 0.93092 1.20658 0.96875 1.05381 0.97974 1.17899 0.91385 0.89808 0.92614 1.19721 1.20558 1.19935 0.92945 0.90707 1.26741 0.91577 0.97617 1.00824 1.69933 1.26659 1.21171 1.24141 0.85354 0.79395 0.78882 0.77111 1.18272 1.18330 1.18637 1.20704 0.99822 1.09586 0.96562 1.20356 0.94623 0.98178 0.96348 1.46786 1.47558 1.14878 1.21718 1.21750 0.74645 0.88183 0.83917 1.90754 1.52477 1.18660 1.77770 1.22588 1.05806 0.91009 0.98227 1.22649 1.02550 0.99981 0.92814 1.21863 0.78762 0.79866 0.88755 1.90764 1.38009 1.55153 1.54653 0.92551 0.88195 0.88497 0.74627 0.85699 0.88137 0.89349 0.89086 0.88566 0.82365 0.84229 0.82876 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.07 71.98 0.65 -2.40 16 2 C 0.11 2.85 3.11 44.24 0.14 2.99 16 3 H 0.14 3.15 7.41 -2.39 -0.02 3.13 16 4 C 0.49 17.69 6.60 87.66 0.58 18.27 16 5 O -0.56 -25.32 12.42 12.51 0.16 -25.16 16 6 N -0.64 -22.58 5.17 -303.11 -1.57 -24.15 16 7 C -0.01 -0.51 6.25 38.57 0.24 -0.27 16 8 C -0.10 -4.49 9.90 22.13 0.22 -4.27 16 9 C -0.19 -10.02 8.74 22.48 0.20 -9.82 16 10 C 0.09 4.84 5.57 -21.28 -0.12 4.73 16 11 C -0.50 -28.05 8.94 23.39 0.21 -27.84 16 12 H 0.07 4.09 8.02 -2.91 -0.02 4.07 16 13 C 0.05 2.64 4.77 85.24 0.41 3.04 16 14 N -0.80 -40.74 11.78 21.82 0.26 -40.49 16 15 Si 0.97 37.81 29.66 68.60 2.03 39.84 16 16 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 C -0.25 -13.53 9.74 22.48 0.22 -13.31 16 20 C -0.08 -3.85 8.59 22.14 0.19 -3.66 16 21 N -0.57 -13.62 2.28 -737.69 -1.68 -15.30 16 22 C 0.52 10.51 8.08 87.99 0.71 11.22 16 23 O -0.52 -13.69 17.23 -2.85 -0.05 -13.74 16 24 C -0.14 -1.15 7.02 30.46 0.21 -0.94 16 25 C -0.14 -1.53 7.05 30.58 0.22 -1.31 16 26 C 0.52 12.77 6.71 88.11 0.59 13.36 16 27 O -0.51 -17.80 15.12 12.67 0.19 -17.61 16 28 H 0.06 1.45 6.64 -2.38 -0.02 1.43 16 29 H 0.10 1.59 7.64 -2.39 -0.02 1.58 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.42 11.02 8.34 -92.71 -0.77 10.25 16 32 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.10 5.37 6.52 -2.91 -0.02 5.35 16 34 H 0.30 13.37 8.30 -92.71 -0.77 12.60 16 35 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.10 4.93 6.45 -2.91 -0.02 4.91 16 37 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.15 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.17 341.27 4.33 -76.84 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.32 Total: 29.97 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.66 Total: -10.21 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.99 Total: -79.93 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.51 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -81.17 4.33 -76.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073697046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.933 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds