Wall clock time and date at job start Tue Mar 31 2020 11:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99863 * 2 1 4 4 C 1.52995 * 109.47256 * 269.99728 * 3 2 1 5 5 C 1.52996 * 109.47248 * 180.02562 * 4 3 2 6 6 F 1.39898 * 109.46990 * 60.00505 * 5 4 3 7 7 F 1.39905 * 109.47382 * 180.02562 * 5 4 3 8 8 F 1.39900 * 109.47590 * 300.00026 * 5 4 3 9 9 C 1.34770 * 119.99744 * 179.97438 * 2 1 3 10 10 O 1.21584 * 120.00180 * 179.97438 * 9 2 1 11 11 N 1.34784 * 120.00251 * 0.02562 * 9 2 1 12 12 C 1.39239 * 120.00089 * 184.27245 * 11 9 2 13 13 C 1.39478 * 119.83437 * 324.72553 * 12 11 9 14 14 C 1.36378 * 120.16590 * 180.25662 * 13 12 11 15 15 C 1.40867 * 119.82838 * 359.49092 * 14 13 12 16 16 C 1.41161 * 120.16530 * 180.23135 * 15 14 13 17 17 H 1.07996 * 119.99921 * 215.05694 * 16 15 14 18 18 C 1.39889 * 119.99514 * 35.05563 * 16 15 14 19 19 N 1.30888 * 120.00533 * 355.51407 * 18 16 15 20 20 Si 1.86804 * 119.99709 * 175.51022 * 18 16 15 21 21 H 1.48503 * 109.47035 * 90.00527 * 20 18 16 22 22 H 1.48504 * 109.47056 * 210.00096 * 20 18 16 23 23 H 1.48489 * 109.47285 * 330.00320 * 20 18 16 24 24 C 1.40874 * 119.67409 * 0.53005 * 15 14 13 25 25 C 1.36370 * 119.82443 * 359.72458 * 24 15 14 26 26 H 1.09003 * 109.47395 * 270.00065 * 1 2 3 27 27 H 1.09004 * 109.46952 * 29.99656 * 1 2 3 28 28 H 1.08998 * 109.47418 * 149.99961 * 1 2 3 29 29 H 1.08994 * 109.47477 * 30.00508 * 3 2 1 30 30 H 1.09008 * 109.46825 * 150.00154 * 3 2 1 31 31 H 1.09000 * 109.47476 * 300.00313 * 4 3 2 32 32 H 1.09000 * 109.47093 * 60.00383 * 4 3 2 33 33 H 0.97002 * 119.99442 * 4.27550 * 11 9 2 34 34 H 1.07998 * 119.91667 * 359.97438 * 13 12 11 35 35 H 1.07998 * 120.08489 * 179.74678 * 14 13 12 36 36 H 0.97000 * 120.00073 * 179.97438 * 19 18 16 37 37 H 1.07991 * 120.08638 * 179.71011 * 24 15 14 38 38 H 1.08003 * 119.91689 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2180 3.0351 -1.4424 6 9 4.4405 2.8672 -0.7832 7 9 3.4508 3.4392 -2.7615 8 9 2.4625 4.0104 -0.7828 9 6 2.1388 -1.1672 0.0005 10 8 3.3547 -1.1673 0.0001 11 7 1.4649 -2.3344 0.0005 12 6 2.1581 -3.5386 0.0909 13 6 3.4032 -3.6703 -0.5238 14 6 4.0857 -4.8483 -0.4440 15 6 3.5349 -5.9302 0.2705 16 6 4.2374 -7.1512 0.3618 17 1 3.6967 -8.0860 0.3695 18 6 5.6340 -7.1501 0.4422 19 7 6.2944 -6.0243 0.3446 20 14 6.5565 -8.7556 0.6891 21 1 6.8811 -9.3484 -0.6332 22 1 7.8130 -8.4947 1.4365 23 1 5.7089 -9.7000 1.4603 24 6 2.2767 -5.7897 0.8883 25 6 1.6038 -4.6072 0.7954 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5139 31 1 3.0416 0.9508 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 0.4969 -2.3355 -0.0625 34 1 3.8258 -2.8388 -1.0682 35 1 5.0478 -4.9502 -0.9239 36 1 7.2628 -6.0236 0.4007 37 1 1.8461 -6.6163 1.4338 38 1 0.6388 -4.4980 1.2681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104986035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:03 Heat of formation + Delta-G solvation = -173.280350 kcal Electronic energy + Delta-G solvation = -25919.189507 eV Core-core repulsion = 21538.951520 eV Total energy + Delta-G solvation = -4380.237987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.11966 -48.62820 -48.59291 -41.60101 -39.36869 -37.12747 -36.18514 -34.82529 -33.24601 -31.38646 -30.65918 -28.05209 -27.30547 -25.89802 -23.68508 -23.12556 -22.49316 -20.80462 -19.67349 -19.52627 -19.19267 -19.05368 -18.49868 -18.02148 -17.08965 -16.58254 -16.22749 -15.88726 -15.72458 -15.49930 -15.25338 -15.04154 -14.92290 -14.77203 -14.73810 -14.57079 -14.41747 -14.24568 -13.94377 -13.57673 -13.41854 -13.40196 -13.11662 -12.84786 -12.84234 -12.63822 -12.30491 -12.23287 -11.77697 -11.67199 -11.29169 -10.88583 -10.52606 -9.81586 -9.41463 -8.68027 -8.46817 -6.29734 0.87748 1.16610 1.39755 1.43127 1.51181 1.55924 1.87919 2.15680 2.25597 2.80187 2.86322 2.99752 3.06580 3.14854 3.72508 3.86501 3.89656 4.27097 4.31040 4.45567 4.51447 4.55815 4.65184 4.84359 4.91765 5.02079 5.12813 5.18238 5.35102 5.42627 5.50609 5.69627 5.79626 6.04731 6.14503 6.18690 6.40125 6.74699 6.99098 7.00613 7.06323 7.62118 8.46065 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002811 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.179249 B = 9958.581470 C =11010.949343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.624 5.624 3 C 0.132 3.868 4 C -0.177 4.177 5 C 0.461 3.539 6 F -0.195 7.195 7 F -0.189 7.189 8 F -0.180 7.180 9 C 0.688 3.312 10 O -0.621 6.621 11 N -0.655 5.655 12 C 0.039 3.961 13 C -0.108 4.108 14 C -0.167 4.167 15 C 0.064 3.936 16 C -0.497 4.497 17 H 0.079 0.921 18 C 0.022 3.978 19 N -0.848 5.848 20 Si 0.990 3.010 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.255 1.255 24 C -0.208 4.208 25 C -0.108 4.108 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.415 0.585 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.281 0.719 37 H 0.113 0.887 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.689 16.037 -2.124 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.361 5.361 3 C 0.008 3.992 4 C -0.216 4.216 5 C 0.406 3.594 6 F -0.176 7.176 7 F -0.171 7.171 8 F -0.161 7.161 9 C 0.390 3.610 10 O -0.500 6.500 11 N -0.305 5.305 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.187 4.187 15 C 0.062 3.938 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.477 5.477 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.179 1.179 24 C -0.228 4.228 25 C -0.128 4.128 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.254 0.746 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.631 16.200 -2.100 20.649 hybrid contribution 0.769 -0.353 -0.043 0.847 sum -11.862 15.847 -2.143 19.911 Atomic orbital electron populations 1.22135 0.76393 1.05120 1.03663 1.46930 1.08135 1.02996 1.78078 1.21267 0.98895 0.85042 0.94040 1.23270 1.03822 0.91988 1.02532 1.20525 0.78008 0.87806 0.73070 1.93201 1.47375 1.95652 1.81401 1.93185 1.94930 1.92183 1.36760 1.93184 1.75594 1.66224 1.81118 1.16248 0.85045 0.81506 0.78153 1.90937 1.13957 1.86442 1.58706 1.42003 1.10014 1.02314 1.76186 1.17133 0.95409 0.86394 1.06567 1.20670 0.95517 0.96567 1.00118 1.21156 1.00708 0.94235 1.02617 1.18051 0.92185 0.93925 0.89645 1.19753 0.92195 0.93954 1.46914 0.90255 1.26834 0.98725 1.01267 0.92107 1.69925 1.09420 1.29159 1.39165 0.85087 0.77388 0.77201 0.79259 1.18732 1.19893 1.17888 1.20950 0.97984 0.98165 1.05706 1.20401 1.00571 0.92732 0.99121 0.90939 0.87479 0.90449 0.85751 0.91449 0.88776 0.84019 0.74589 0.88557 0.87981 0.90876 0.86899 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.24 127.77 1.31 2.02 16 2 N -0.62 -13.32 2.87 -864.92 -2.48 -15.81 16 3 C 0.13 2.50 5.16 86.38 0.45 2.95 16 4 C -0.18 -2.98 5.58 30.59 0.17 -2.81 16 5 C 0.46 8.73 3.16 71.98 0.23 8.95 16 6 F -0.19 -4.78 16.80 44.97 0.76 -4.02 16 7 F -0.19 -3.87 17.32 44.97 0.78 -3.09 16 8 F -0.18 -3.04 16.80 44.97 0.76 -2.28 16 9 C 0.69 23.20 8.11 179.05 1.45 24.65 16 10 O -0.62 -28.01 13.34 -3.98 -0.05 -28.06 16 11 N -0.66 -21.15 5.18 -316.78 -1.64 -22.79 16 12 C 0.04 1.68 6.31 38.57 0.24 1.92 16 13 C -0.11 -5.58 8.61 22.13 0.19 -5.39 16 14 C -0.17 -9.46 8.61 22.48 0.19 -9.27 16 15 C 0.06 3.55 5.55 -21.27 -0.12 3.44 16 16 C -0.50 -27.44 9.02 23.39 0.21 -27.22 16 17 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 18 C 0.02 1.15 5.42 85.23 0.46 1.61 16 19 N -0.85 -47.94 10.61 21.82 0.23 -47.71 16 20 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.21 -9.88 9.74 22.48 0.22 -9.66 16 25 C -0.11 -4.42 9.90 22.13 0.22 -4.20 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.46 8.07 -2.38 -0.02 0.44 16 28 H 0.08 0.71 6.30 -2.39 -0.02 0.69 16 29 H 0.12 1.46 7.73 -2.39 -0.02 1.44 16 30 H 0.07 1.76 7.08 -2.38 -0.02 1.74 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.41 9.36 6.51 -92.71 -0.60 8.75 16 34 H 0.10 5.11 6.22 -2.91 -0.02 5.10 16 35 H 0.10 6.24 6.15 -2.91 -0.02 6.22 16 36 H 0.28 14.60 8.30 -92.71 -0.77 13.83 16 37 H 0.11 4.88 8.06 -2.92 -0.02 4.86 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -73.95 333.97 6.11 -67.84 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.51 Total: 26.67 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 5.22 Total: -13.00 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.90 Total: -86.31 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 9 Polarization: -11.69 SS G_CDS: 2.29 Total: -9.40 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -73.95 6.11 -67.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104986035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.436 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds