Wall clock time and date at job start Tue Mar 31 2020 11:14:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.45202 * 109.47487 * 2 1
4 4 C 1.34849 * 117.00183 * 180.02562 * 3 2 1
5 5 O 1.21618 * 120.00244 * 0.02562 * 4 3 2
6 6 C 1.46638 * 120.00099 * 180.02562 * 4 3 2
7 7 C 1.43200 * 119.99720 * 6.31007 * 6 4 3
8 8 N 5.00724 * 99.53716 * 2.83789 * 2 1 3
9 9 C 1.37928 * 119.99893 * 186.30531 * 6 4 3
10 10 N 1.35113 * 120.00044 * 7.79865 * 9 6 4
11 11 C 1.46509 * 119.99678 * 175.87454 * 10 9 6
12 12 C 1.50701 * 109.46942 * 180.02562 * 11 10 9
13 13 C 1.38323 * 119.96106 * 269.71965 * 12 11 10
14 14 C 1.38284 * 120.13900 * 179.76772 * 13 12 11
15 15 C 1.38125 * 120.06553 * 0.50884 * 14 13 12
16 16 C 1.38861 * 119.93000 * 359.74859 * 15 14 13
17 17 O 1.35752 * 120.06887 * 179.97438 * 16 15 14
18 18 C 1.34830 * 117.00011 * 354.42695 * 17 16 15
19 19 H 1.08003 * 119.99748 * 5.07152 * 18 17 16
20 20 C 1.38651 * 120.00034 * 185.07227 * 18 17 16
21 21 N 1.31560 * 119.99854 * 179.97438 * 20 18 17
22 22 Si 1.86801 * 119.99955 * 0.02562 * 20 18 17
23 23 H 1.48496 * 109.47415 * 89.99995 * 22 20 18
24 24 H 1.48505 * 109.46927 * 209.99849 * 22 20 18
25 25 H 1.48503 * 109.46888 * 329.99446 * 22 20 18
26 26 C 1.38078 * 119.96816 * 89.99800 * 12 11 10
27 27 H 1.09010 * 109.46799 * 299.99717 * 1 2 3
28 28 H 1.08995 * 109.47587 * 59.99174 * 1 2 3
29 29 H 1.08997 * 109.47540 * 179.97438 * 1 2 3
30 30 H 1.09010 * 109.46799 * 240.00283 * 2 1 3
31 31 H 1.08995 * 109.47587 * 120.00826 * 2 1 3
32 32 H 1.07997 * 119.99715 * 187.79817 * 9 6 4
33 33 H 0.96993 * 120.00250 * 355.87061 * 10 9 6
34 34 H 1.09005 * 109.46802 * 299.99869 * 11 10 9
35 35 H 1.08994 * 109.47094 * 59.99613 * 11 10 9
36 36 H 1.08002 * 119.93216 * 0.02562 * 13 12 11
37 37 H 1.07990 * 119.97225 * 180.25693 * 14 13 12
38 38 H 1.07999 * 120.03992 * 179.76701 * 15 14 13
39 39 H 0.97003 * 119.99635 * 180.02562 * 21 20 18
40 40 H 1.08002 * 120.03253 * 359.95240 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3509 1.5456 -0.0005
5 8 4.0918 0.5811 -0.0015
6 6 3.9115 2.9006 0.0000
7 6 3.0461 4.0333 0.1374
8 7 2.3596 4.9320 0.2445
9 6 5.2721 3.0841 -0.1317
10 7 6.0709 2.0328 -0.4185
11 6 7.5028 2.2419 -0.6476
12 6 8.1619 0.9201 -0.9467
13 6 8.6796 0.1573 0.0846
14 6 9.2809 -1.0584 -0.1851
15 6 9.3756 -1.5098 -1.4871
16 6 8.8617 -0.7439 -2.5251
17 8 8.9537 -1.1845 -3.8058
18 6 9.6564 -2.3161 -4.0148
19 1 10.0455 -2.8729 -3.1751
20 6 9.8795 -2.7649 -5.3075
21 7 10.5656 -3.8688 -5.5114
22 14 9.2070 -1.8014 -6.7597
23 1 10.2131 -0.8013 -7.1988
24 1 8.9140 -2.7328 -7.8787
25 1 7.9594 -1.1044 -6.3562
26 6 8.2536 0.4743 -2.2503
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5139 -0.8898
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8901
31 1 1.8933 -0.5139 0.8898
32 1 5.6990 4.0681 -0.0057
33 1 5.6965 1.1397 -0.4726
34 1 7.6408 2.9158 -1.4932
35 1 7.9532 2.6796 0.2432
36 1 8.6103 0.5100 1.1030
37 1 9.6804 -1.6537 0.6225
38 1 9.8487 -2.4576 -1.6977
39 1 10.7219 -4.1825 -6.4159
40 1 7.8525 1.0721 -3.0554
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000113139496.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:06
Heat of formation + Delta-G solvation = -41.667783 kcal
Electronic energy + Delta-G solvation = -24633.514954 eV
Core-core repulsion = 20800.840857 eV
Total energy + Delta-G solvation = -3832.674098 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.61560 -39.52124 -38.28625 -36.95762 -36.44478 -35.89127 -32.68979 -32.47091
-31.81180 -30.25898 -29.42310 -26.23600 -25.24824 -24.32245 -22.66539 -22.01434
-21.54856 -21.02760 -19.30024 -17.93417 -17.56131 -16.89835 -16.72090 -16.56429
-15.69834 -15.52288 -15.22429 -14.61818 -14.35549 -14.21614 -13.96509 -13.76843
-13.62973 -13.59868 -13.23153 -12.95638 -12.82031 -12.75565 -12.49646 -12.44116
-12.27500 -12.11157 -11.73686 -11.54957 -11.24834 -11.04248 -10.94313 -10.88115
-10.64376 -10.45273 -10.27787 -9.54862 -8.99868 -8.49400 -8.15677 -7.58816
-6.52806 -4.20535 0.93883 1.62451 2.04237 2.39790 2.56114 2.82842
3.13856 3.18122 3.23187 3.32092 3.61832 4.13788 4.23856 4.27441
4.42148 4.46793 4.77350 4.77799 4.81504 4.96330 5.03484 5.08862
5.12149 5.26317 5.36090 5.46299 5.57348 5.59305 5.61560 5.77594
5.89460 6.02352 6.27429 6.29530 6.53603 6.62030 6.83230 6.96457
7.10138 7.25619 7.38802 7.61995 7.64890 7.86380 7.89889 8.81627
9.41132 10.54429
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.012965 B = 0.002913 C = 0.002714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.066360 B = 9610.840796 C =10312.723015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.063 3.937
3 O -0.354 6.354
4 C 0.537 3.463
5 O -0.535 6.535
6 C -0.299 4.299
7 C 0.292 3.708
8 N -0.458 5.458
9 C 0.315 3.685
10 N -0.656 5.656
11 C 0.141 3.859
12 C -0.084 4.084
13 C -0.182 4.182
14 C -0.077 4.077
15 C -0.207 4.207
16 C 0.156 3.844
17 O -0.214 6.214
18 C -0.392 4.392
19 H 0.107 0.893
20 C 0.065 3.935
21 N -0.876 5.876
22 Si 0.906 3.094
23 H -0.272 1.272
24 H -0.281 1.281
25 H -0.259 1.259
26 C -0.168 4.168
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.070 0.930
32 H 0.171 0.829
33 H 0.429 0.571
34 H 0.088 0.912
35 H 0.087 0.913
36 H 0.110 0.890
37 H 0.114 0.886
38 H 0.135 0.865
39 H 0.281 0.719
40 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.801 10.452 11.237 18.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.011 4.011
3 O -0.271 6.271
4 C 0.387 3.613
5 O -0.427 6.427
6 C -0.316 4.316
7 C -0.021 4.021
8 N -0.137 5.137
9 C 0.163 3.837
10 N -0.281 5.281
11 C 0.019 3.981
12 C -0.085 4.085
13 C -0.201 4.201
14 C -0.095 4.095
15 C -0.227 4.227
16 C 0.104 3.896
17 O -0.118 6.118
18 C -0.468 4.468
19 H 0.125 0.875
20 C -0.139 4.139
21 N -0.513 5.513
22 Si 0.731 3.269
23 H -0.198 1.198
24 H -0.207 1.207
25 H -0.183 1.183
26 C -0.188 4.188
27 H 0.084 0.916
28 H 0.085 0.915
29 H 0.098 0.902
30 H 0.090 0.910
31 H 0.089 0.911
32 H 0.188 0.812
33 H 0.281 0.719
34 H 0.106 0.894
35 H 0.105 0.895
36 H 0.128 0.872
37 H 0.132 0.868
38 H 0.153 0.847
39 H 0.091 0.909
40 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -10.406 11.336 10.945 18.883
hybrid contribution 0.070 -0.784 -0.662 1.028
sum -10.336 10.552 10.283 17.998
Atomic orbital electron populations
1.21803 0.92850 1.02879 1.03438 1.23015 0.95163 0.80102 1.02841
1.86607 1.23772 1.32159 1.84544 1.20298 0.80501 0.88460 0.72068
1.90545 1.59066 1.42139 1.50982 1.15629 0.89725 0.85975 1.40285
1.24759 0.93281 0.92172 0.91916 1.81218 1.07979 1.10701 1.13774
1.21998 0.88406 0.93434 0.79820 1.46107 1.08919 1.12425 1.60615
1.20784 0.78538 0.96379 1.02390 1.19027 1.01004 0.95232 0.93194
1.20530 1.05397 0.96670 0.97535 1.20813 0.97398 0.95355 0.95918
1.21408 1.06327 1.02542 0.92413 1.19033 0.93676 0.92072 0.84868
1.83573 1.64836 1.41282 1.22134 1.20764 1.31675 0.98653 0.95682
0.87541 1.24476 0.95599 0.95892 0.97919 1.69642 1.37515 1.20882
1.23231 0.86181 0.80489 0.79667 0.80582 1.19789 1.20653 1.18337
1.20053 1.06773 0.96122 0.95866 0.91627 0.91536 0.90225 0.90972
0.91137 0.81209 0.71910 0.89422 0.89460 0.87159 0.86804 0.84698
0.90882 0.86283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 10.29 37.15 0.38 -0.80 16
2 C 0.06 0.64 6.20 37.15 0.23 0.87 16
3 O -0.35 -4.46 9.77 -40.90 -0.40 -4.86 16
4 C 0.54 6.84 7.82 34.12 0.27 7.11 16
5 O -0.53 -7.68 13.43 -19.36 -0.26 -7.94 16
6 C -0.30 -3.15 5.90 -104.70 -0.62 -3.76 16
7 C 0.29 3.53 14.98 -22.47 -0.34 3.19 16
8 N -0.46 -6.49 18.54 41.84 0.78 -5.71 16
9 C 0.32 2.40 10.21 -16.22 -0.17 2.24 16
10 N -0.66 -6.28 5.41 -61.80 -0.33 -6.62 16
11 C 0.14 1.25 6.36 -5.19 -0.03 1.22 16
12 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16
13 C -0.18 -2.56 9.70 -39.53 -0.38 -2.94 16
14 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16
15 C -0.21 -4.10 9.17 -39.39 -0.36 -4.46 16
16 C 0.16 3.30 6.65 -39.11 -0.26 3.04 16
17 O -0.21 -5.30 8.59 0.04 0.00 -5.30 16
18 C -0.39 -10.55 9.95 30.88 0.31 -10.24 16
19 H 0.11 2.92 5.44 -52.48 -0.29 2.63 16
20 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16
21 N -0.88 -24.46 13.96 55.48 0.77 -23.69 16
22 Si 0.91 20.84 28.62 -169.99 -4.86 15.98 16
23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
25 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16
26 C -0.17 -2.89 9.65 -39.40 -0.38 -3.27 16
27 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16
33 H 0.43 5.34 4.89 -41.31 -0.20 5.14 16
34 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16
35 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16
36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16
37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16
38 H 0.14 2.83 5.64 -52.49 -0.30 2.54 16
39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16
40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16
LS Contribution 360.65 15.07 5.43 5.43
Total: -1.00 -31.59 360.65 -5.83 -37.42
By element:
Atomic # 1 Polarization: 9.34 SS G_CDS: -4.56 Total: 4.78 kcal
Atomic # 6 Polarization: -7.09 SS G_CDS: -2.39 Total: -9.48 kcal
Atomic # 7 Polarization: -37.24 SS G_CDS: 1.22 Total: -36.02 kcal
Atomic # 8 Polarization: -17.45 SS G_CDS: -0.66 Total: -18.11 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.98 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -31.59 -5.83 -37.42 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113139496.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.248 kcal
(2) G-P(sol) polarization free energy of solvation -31.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.840 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds