Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47487 * 2 1 4 4 C 1.34849 * 117.00183 * 180.02562 * 3 2 1 5 5 O 1.21618 * 120.00244 * 0.02562 * 4 3 2 6 6 C 1.46638 * 120.00099 * 180.02562 * 4 3 2 7 7 C 1.43200 * 119.99720 * 6.31007 * 6 4 3 8 8 N 5.00724 * 99.53716 * 2.83789 * 2 1 3 9 9 C 1.37928 * 119.99893 * 186.30531 * 6 4 3 10 10 N 1.35113 * 120.00044 * 7.79865 * 9 6 4 11 11 C 1.46509 * 119.99678 * 175.87454 * 10 9 6 12 12 C 1.50701 * 109.46942 * 180.02562 * 11 10 9 13 13 C 1.38323 * 119.96106 * 269.71965 * 12 11 10 14 14 C 1.38284 * 120.13900 * 179.76772 * 13 12 11 15 15 C 1.38125 * 120.06553 * 0.50884 * 14 13 12 16 16 C 1.38861 * 119.93000 * 359.74859 * 15 14 13 17 17 O 1.35752 * 120.06887 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00011 * 354.42695 * 17 16 15 19 19 H 1.08003 * 119.99748 * 5.07152 * 18 17 16 20 20 C 1.38651 * 120.00034 * 185.07227 * 18 17 16 21 21 N 1.31560 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47415 * 89.99995 * 22 20 18 24 24 H 1.48505 * 109.46927 * 209.99849 * 22 20 18 25 25 H 1.48503 * 109.46888 * 329.99446 * 22 20 18 26 26 C 1.38078 * 119.96816 * 89.99800 * 12 11 10 27 27 H 1.09010 * 109.46799 * 299.99717 * 1 2 3 28 28 H 1.08995 * 109.47587 * 59.99174 * 1 2 3 29 29 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46799 * 240.00283 * 2 1 3 31 31 H 1.08995 * 109.47587 * 120.00826 * 2 1 3 32 32 H 1.07997 * 119.99715 * 187.79817 * 9 6 4 33 33 H 0.96993 * 120.00250 * 355.87061 * 10 9 6 34 34 H 1.09005 * 109.46802 * 299.99869 * 11 10 9 35 35 H 1.08994 * 109.47094 * 59.99613 * 11 10 9 36 36 H 1.08002 * 119.93216 * 0.02562 * 13 12 11 37 37 H 1.07990 * 119.97225 * 180.25693 * 14 13 12 38 38 H 1.07999 * 120.03992 * 179.76701 * 15 14 13 39 39 H 0.97003 * 119.99635 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.03253 * 359.95240 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3509 1.5456 -0.0005 5 8 4.0918 0.5811 -0.0015 6 6 3.9115 2.9006 0.0000 7 6 3.0461 4.0333 0.1374 8 7 2.3596 4.9320 0.2445 9 6 5.2721 3.0841 -0.1317 10 7 6.0709 2.0328 -0.4185 11 6 7.5028 2.2419 -0.6476 12 6 8.1619 0.9201 -0.9467 13 6 8.6796 0.1573 0.0846 14 6 9.2809 -1.0584 -0.1851 15 6 9.3756 -1.5098 -1.4871 16 6 8.8617 -0.7439 -2.5251 17 8 8.9537 -1.1845 -3.8058 18 6 9.6564 -2.3161 -4.0148 19 1 10.0455 -2.8729 -3.1751 20 6 9.8795 -2.7649 -5.3075 21 7 10.5656 -3.8688 -5.5114 22 14 9.2070 -1.8014 -6.7597 23 1 10.2131 -0.8013 -7.1988 24 1 8.9140 -2.7328 -7.8787 25 1 7.9594 -1.1044 -6.3562 26 6 8.2536 0.4743 -2.2503 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 5.6990 4.0681 -0.0057 33 1 5.6965 1.1397 -0.4726 34 1 7.6408 2.9158 -1.4932 35 1 7.9532 2.6796 0.2432 36 1 8.6103 0.5100 1.1030 37 1 9.6804 -1.6537 0.6225 38 1 9.8487 -2.4576 -1.6977 39 1 10.7219 -4.1825 -6.4159 40 1 7.8525 1.0721 -3.0554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113139496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = -41.667783 kcal Electronic energy + Delta-G solvation = -24633.514954 eV Core-core repulsion = 20800.840857 eV Total energy + Delta-G solvation = -3832.674098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61560 -39.52124 -38.28625 -36.95762 -36.44478 -35.89127 -32.68979 -32.47091 -31.81180 -30.25898 -29.42310 -26.23600 -25.24824 -24.32245 -22.66539 -22.01434 -21.54856 -21.02760 -19.30024 -17.93417 -17.56131 -16.89835 -16.72090 -16.56429 -15.69834 -15.52288 -15.22429 -14.61818 -14.35549 -14.21614 -13.96509 -13.76843 -13.62973 -13.59868 -13.23153 -12.95638 -12.82031 -12.75565 -12.49646 -12.44116 -12.27500 -12.11157 -11.73686 -11.54957 -11.24834 -11.04248 -10.94313 -10.88115 -10.64376 -10.45273 -10.27787 -9.54862 -8.99868 -8.49400 -8.15677 -7.58816 -6.52806 -4.20535 0.93883 1.62451 2.04237 2.39790 2.56114 2.82842 3.13856 3.18122 3.23187 3.32092 3.61832 4.13788 4.23856 4.27441 4.42148 4.46793 4.77350 4.77799 4.81504 4.96330 5.03484 5.08862 5.12149 5.26317 5.36090 5.46299 5.57348 5.59305 5.61560 5.77594 5.89460 6.02352 6.27429 6.29530 6.53603 6.62030 6.83230 6.96457 7.10138 7.25619 7.38802 7.61995 7.64890 7.86380 7.89889 8.81627 9.41132 10.54429 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.002913 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.066360 B = 9610.840796 C =10312.723015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.537 3.463 5 O -0.535 6.535 6 C -0.299 4.299 7 C 0.292 3.708 8 N -0.458 5.458 9 C 0.315 3.685 10 N -0.656 5.656 11 C 0.141 3.859 12 C -0.084 4.084 13 C -0.182 4.182 14 C -0.077 4.077 15 C -0.207 4.207 16 C 0.156 3.844 17 O -0.214 6.214 18 C -0.392 4.392 19 H 0.107 0.893 20 C 0.065 3.935 21 N -0.876 5.876 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.171 0.829 33 H 0.429 0.571 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.281 0.719 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 10.452 11.237 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.387 3.613 5 O -0.427 6.427 6 C -0.316 4.316 7 C -0.021 4.021 8 N -0.137 5.137 9 C 0.163 3.837 10 N -0.281 5.281 11 C 0.019 3.981 12 C -0.085 4.085 13 C -0.201 4.201 14 C -0.095 4.095 15 C -0.227 4.227 16 C 0.104 3.896 17 O -0.118 6.118 18 C -0.468 4.468 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.188 4.188 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.188 0.812 33 H 0.281 0.719 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.406 11.336 10.945 18.883 hybrid contribution 0.070 -0.784 -0.662 1.028 sum -10.336 10.552 10.283 17.998 Atomic orbital electron populations 1.21803 0.92850 1.02879 1.03438 1.23015 0.95163 0.80102 1.02841 1.86607 1.23772 1.32159 1.84544 1.20298 0.80501 0.88460 0.72068 1.90545 1.59066 1.42139 1.50982 1.15629 0.89725 0.85975 1.40285 1.24759 0.93281 0.92172 0.91916 1.81218 1.07979 1.10701 1.13774 1.21998 0.88406 0.93434 0.79820 1.46107 1.08919 1.12425 1.60615 1.20784 0.78538 0.96379 1.02390 1.19027 1.01004 0.95232 0.93194 1.20530 1.05397 0.96670 0.97535 1.20813 0.97398 0.95355 0.95918 1.21408 1.06327 1.02542 0.92413 1.19033 0.93676 0.92072 0.84868 1.83573 1.64836 1.41282 1.22134 1.20764 1.31675 0.98653 0.95682 0.87541 1.24476 0.95599 0.95892 0.97919 1.69642 1.37515 1.20882 1.23231 0.86181 0.80489 0.79667 0.80582 1.19789 1.20653 1.18337 1.20053 1.06773 0.96122 0.95866 0.91627 0.91536 0.90225 0.90972 0.91137 0.81209 0.71910 0.89422 0.89460 0.87159 0.86804 0.84698 0.90882 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.15 0.38 -0.80 16 2 C 0.06 0.64 6.20 37.15 0.23 0.87 16 3 O -0.35 -4.46 9.77 -40.90 -0.40 -4.86 16 4 C 0.54 6.84 7.82 34.12 0.27 7.11 16 5 O -0.53 -7.68 13.43 -19.36 -0.26 -7.94 16 6 C -0.30 -3.15 5.90 -104.70 -0.62 -3.76 16 7 C 0.29 3.53 14.98 -22.47 -0.34 3.19 16 8 N -0.46 -6.49 18.54 41.84 0.78 -5.71 16 9 C 0.32 2.40 10.21 -16.22 -0.17 2.24 16 10 N -0.66 -6.28 5.41 -61.80 -0.33 -6.62 16 11 C 0.14 1.25 6.36 -5.19 -0.03 1.22 16 12 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16 13 C -0.18 -2.56 9.70 -39.53 -0.38 -2.94 16 14 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 15 C -0.21 -4.10 9.17 -39.39 -0.36 -4.46 16 16 C 0.16 3.30 6.65 -39.11 -0.26 3.04 16 17 O -0.21 -5.30 8.59 0.04 0.00 -5.30 16 18 C -0.39 -10.55 9.95 30.88 0.31 -10.24 16 19 H 0.11 2.92 5.44 -52.48 -0.29 2.63 16 20 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -24.46 13.96 55.48 0.77 -23.69 16 22 Si 0.91 20.84 28.62 -169.99 -4.86 15.98 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.17 -2.89 9.65 -39.40 -0.38 -3.27 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.43 5.34 4.89 -41.31 -0.20 5.14 16 34 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.14 2.83 5.64 -52.49 -0.30 2.54 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -31.59 360.65 -5.83 -37.42 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.56 Total: 4.78 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.39 Total: -9.48 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 1.22 Total: -36.02 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.66 Total: -18.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.59 -5.83 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113139496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.248 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds