Wall clock time and date at job start Tue Mar 31 2020 11:14:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.45202 * 109.47487 * 2 1
4 4 C 1.34849 * 117.00183 * 180.02562 * 3 2 1
5 5 O 1.21618 * 120.00244 * 0.02562 * 4 3 2
6 6 C 1.46638 * 120.00099 * 180.02562 * 4 3 2
7 7 C 1.43200 * 119.99720 * 6.31007 * 6 4 3
8 8 N 5.00724 * 99.53716 * 2.83789 * 2 1 3
9 9 C 1.37928 * 119.99893 * 186.30531 * 6 4 3
10 10 N 1.35113 * 120.00044 * 7.79865 * 9 6 4
11 11 C 1.46509 * 119.99678 * 175.87454 * 10 9 6
12 12 C 1.50701 * 109.46942 * 180.02562 * 11 10 9
13 13 C 1.38323 * 119.96106 * 269.71965 * 12 11 10
14 14 C 1.38284 * 120.13900 * 179.76772 * 13 12 11
15 15 C 1.38125 * 120.06553 * 0.50884 * 14 13 12
16 16 C 1.38861 * 119.93000 * 359.74859 * 15 14 13
17 17 O 1.35752 * 120.06887 * 179.97438 * 16 15 14
18 18 C 1.34830 * 117.00011 * 354.42695 * 17 16 15
19 19 H 1.08003 * 119.99748 * 5.07152 * 18 17 16
20 20 C 1.38651 * 120.00034 * 185.07227 * 18 17 16
21 21 N 1.31560 * 119.99854 * 179.97438 * 20 18 17
22 22 Si 1.86801 * 119.99955 * 0.02562 * 20 18 17
23 23 H 1.48496 * 109.47415 * 89.99995 * 22 20 18
24 24 H 1.48505 * 109.46927 * 209.99849 * 22 20 18
25 25 H 1.48503 * 109.46888 * 329.99446 * 22 20 18
26 26 C 1.38078 * 119.96816 * 89.99800 * 12 11 10
27 27 H 1.09010 * 109.46799 * 299.99717 * 1 2 3
28 28 H 1.08995 * 109.47587 * 59.99174 * 1 2 3
29 29 H 1.08997 * 109.47540 * 179.97438 * 1 2 3
30 30 H 1.09010 * 109.46799 * 240.00283 * 2 1 3
31 31 H 1.08995 * 109.47587 * 120.00826 * 2 1 3
32 32 H 1.07997 * 119.99715 * 187.79817 * 9 6 4
33 33 H 0.96993 * 120.00250 * 355.87061 * 10 9 6
34 34 H 1.09005 * 109.46802 * 299.99869 * 11 10 9
35 35 H 1.08994 * 109.47094 * 59.99613 * 11 10 9
36 36 H 1.08002 * 119.93216 * 0.02562 * 13 12 11
37 37 H 1.07990 * 119.97225 * 180.25693 * 14 13 12
38 38 H 1.07999 * 120.03992 * 179.76701 * 15 14 13
39 39 H 0.97003 * 119.99635 * 180.02562 * 21 20 18
40 40 H 1.08002 * 120.03253 * 359.95240 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3509 1.5456 -0.0005
5 8 4.0918 0.5811 -0.0015
6 6 3.9115 2.9006 0.0000
7 6 3.0461 4.0333 0.1374
8 7 2.3596 4.9320 0.2445
9 6 5.2721 3.0841 -0.1317
10 7 6.0709 2.0328 -0.4185
11 6 7.5028 2.2419 -0.6476
12 6 8.1619 0.9201 -0.9467
13 6 8.6796 0.1573 0.0846
14 6 9.2809 -1.0584 -0.1851
15 6 9.3756 -1.5098 -1.4871
16 6 8.8617 -0.7439 -2.5251
17 8 8.9537 -1.1845 -3.8058
18 6 9.6564 -2.3161 -4.0148
19 1 10.0455 -2.8729 -3.1751
20 6 9.8795 -2.7649 -5.3075
21 7 10.5656 -3.8688 -5.5114
22 14 9.2070 -1.8014 -6.7597
23 1 10.2131 -0.8013 -7.1988
24 1 8.9140 -2.7328 -7.8787
25 1 7.9594 -1.1044 -6.3562
26 6 8.2536 0.4743 -2.2503
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5139 -0.8898
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8901
31 1 1.8933 -0.5139 0.8898
32 1 5.6990 4.0681 -0.0057
33 1 5.6965 1.1397 -0.4726
34 1 7.6408 2.9158 -1.4932
35 1 7.9532 2.6796 0.2432
36 1 8.6103 0.5100 1.1030
37 1 9.6804 -1.6537 0.6225
38 1 9.8487 -2.4576 -1.6977
39 1 10.7219 -4.1825 -6.4159
40 1 7.8525 1.0721 -3.0554
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000113139496.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:06
Heat of formation + Delta-G solvation = -60.959966 kcal
Electronic energy + Delta-G solvation = -24634.351526 eV
Core-core repulsion = 20800.840857 eV
Total energy + Delta-G solvation = -3833.510670 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.51536 -40.95574 -39.31322 -38.22951 -37.39644 -36.88883 -34.48390 -33.59718
-32.61494 -31.41442 -30.75263 -27.49411 -26.83910 -25.10686 -23.40290 -23.34432
-22.44780 -22.38470 -20.29383 -19.65308 -18.97987 -17.83981 -17.69217 -17.45740
-16.89087 -16.71364 -16.43497 -15.90757 -15.64965 -15.38404 -15.18570 -14.92346
-14.78190 -14.46748 -14.28651 -14.21485 -13.94672 -13.88773 -13.70623 -13.58041
-13.42587 -13.08255 -12.91245 -12.56101 -12.49985 -12.48484 -12.40419 -11.98617
-11.82873 -11.49869 -11.37378 -11.32241 -10.92836 -9.82241 -9.12757 -8.94757
-8.51418 -6.24489 0.25601 0.33107 0.65563 1.31248 1.34509 1.47485
1.50877 1.71976 1.99931 2.26501 2.33390 2.74535 2.80413 3.00454
3.14679 3.49372 3.72119 3.83260 4.02677 4.06206 4.10129 4.28212
4.32246 4.38709 4.41987 4.47789 4.56535 4.66617 4.71520 4.88015
4.90784 4.92699 5.13359 5.19583 5.36553 5.46987 5.59635 5.68405
5.73792 5.88515 5.94657 6.20479 6.35337 6.71714 6.83043 6.97031
7.56764 8.60209
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.012965 B = 0.002913 C = 0.002714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.066360 B = 9610.840796 C =10312.723015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.056 3.944
3 O -0.369 6.369
4 C 0.527 3.473
5 O -0.559 6.559
6 C -0.319 4.319
7 C 0.314 3.686
8 N -0.502 5.502
9 C 0.349 3.651
10 N -0.661 5.661
11 C 0.143 3.857
12 C -0.072 4.072
13 C -0.156 4.156
14 C -0.082 4.082
15 C -0.231 4.231
16 C 0.113 3.887
17 O -0.245 6.245
18 C -0.399 4.399
19 H 0.081 0.919
20 C 0.010 3.990
21 N -0.924 5.924
22 Si 0.970 3.030
23 H -0.263 1.263
24 H -0.270 1.270
25 H -0.263 1.263
26 C -0.168 4.168
27 H 0.066 0.934
28 H 0.063 0.937
29 H 0.099 0.901
30 H 0.065 0.935
31 H 0.071 0.929
32 H 0.224 0.776
33 H 0.416 0.584
34 H 0.115 0.885
35 H 0.132 0.868
36 H 0.156 0.844
37 H 0.139 0.861
38 H 0.105 0.895
39 H 0.285 0.715
40 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.352 13.846 13.117 21.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.018 4.018
3 O -0.286 6.286
4 C 0.379 3.621
5 O -0.454 6.454
6 C -0.336 4.336
7 C 0.002 3.998
8 N -0.183 5.183
9 C 0.196 3.804
10 N -0.281 5.281
11 C 0.022 3.978
12 C -0.072 4.072
13 C -0.175 4.175
14 C -0.100 4.100
15 C -0.250 4.250
16 C 0.065 3.935
17 O -0.153 6.153
18 C -0.475 4.475
19 H 0.098 0.902
20 C -0.189 4.189
21 N -0.565 5.565
22 Si 0.793 3.207
23 H -0.188 1.188
24 H -0.195 1.195
25 H -0.187 1.187
26 C -0.188 4.188
27 H 0.085 0.915
28 H 0.082 0.918
29 H 0.118 0.882
30 H 0.084 0.916
31 H 0.089 0.911
32 H 0.241 0.759
33 H 0.266 0.734
34 H 0.133 0.867
35 H 0.150 0.850
36 H 0.174 0.826
37 H 0.157 0.843
38 H 0.123 0.877
39 H 0.094 0.906
40 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -10.966 14.766 12.872 22.450
hybrid contribution 0.237 -1.742 -0.873 1.963
sum -10.729 13.024 12.000 20.706
Atomic orbital electron populations
1.21815 0.91021 1.04213 1.03355 1.23200 0.96678 0.79339 1.02547
1.86613 1.24133 1.33314 1.84523 1.20761 0.80368 0.89214 0.71726
1.90531 1.59358 1.42986 1.52524 1.15630 0.90832 0.84260 1.42869
1.24855 0.92567 0.91705 0.90653 1.81244 1.08986 1.12201 1.15819
1.22556 0.86903 0.94642 0.76328 1.46153 1.09483 1.12494 1.60014
1.21020 0.77527 0.93485 1.05771 1.19570 0.99289 0.97052 0.91331
1.21142 1.01707 0.94840 0.99821 1.21164 0.97341 0.96751 0.94714
1.21417 1.07394 1.01893 0.94339 1.19670 0.95740 0.94128 0.84005
1.83512 1.66593 1.40899 1.24272 1.20684 1.31978 0.99536 0.95299
0.90188 1.25280 0.96182 0.96934 1.00473 1.69732 1.40029 1.22780
1.23939 0.85219 0.79627 0.78476 0.77419 1.18816 1.19492 1.18703
1.20420 1.05636 0.94585 0.98154 0.91473 0.91777 0.88194 0.91639
0.91064 0.75916 0.73449 0.86711 0.84976 0.82647 0.84314 0.87720
0.90584 0.85155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.14 10.29 71.98 0.74 -1.40 16
2 C 0.06 1.12 6.20 71.98 0.45 1.57 16
3 O -0.37 -9.10 9.77 -57.62 -0.56 -9.67 16
4 C 0.53 12.69 7.82 70.01 0.55 13.24 16
5 O -0.56 -15.30 13.43 19.45 0.26 -15.04 16
6 C -0.32 -5.75 5.90 -19.91 -0.12 -5.86 16
7 C 0.31 6.88 14.98 88.33 1.32 8.21 16
8 N -0.50 -13.50 18.54 19.00 0.35 -13.15 16
9 C 0.35 3.41 10.21 84.11 0.86 4.26 16
10 N -0.66 -9.07 5.41 -349.43 -1.89 -10.96 16
11 C 0.14 1.54 6.36 85.63 0.55 2.09 16
12 C -0.07 -1.64 5.25 -19.88 -0.10 -1.74 16
13 C -0.16 -3.63 9.70 22.30 0.22 -3.41 16
14 C -0.08 -2.47 10.04 22.25 0.22 -2.24 16
15 C -0.23 -9.44 9.17 22.39 0.21 -9.23 16
16 C 0.11 4.91 6.65 22.58 0.15 5.06 16
17 O -0.25 -12.75 8.59 -22.76 -0.20 -12.94 16
18 C -0.40 -22.90 9.95 67.92 0.68 -22.22 16
19 H 0.08 4.83 5.44 -2.91 -0.02 4.81 16
20 C 0.01 0.55 5.49 84.83 0.47 1.02 16
21 N -0.92 -54.50 13.96 21.61 0.30 -54.19 16
22 Si 0.97 44.40 28.62 68.60 1.96 46.36 16
23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16
24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
26 C -0.17 -5.46 9.65 22.39 0.22 -5.24 16
27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16
28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16
31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16
33 H 0.42 8.77 4.89 -100.39 -0.49 8.28 16
34 H 0.11 0.79 8.08 -2.38 -0.02 0.77 16
35 H 0.13 0.45 8.08 -2.39 -0.02 0.43 16
36 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16
37 H 0.14 3.43 8.06 -2.92 -0.02 3.41 16
38 H 0.10 4.84 5.64 -2.91 -0.02 4.83 16
39 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
40 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16
Total: -1.00 -77.03 360.65 7.22 -69.82
By element:
Atomic # 1 Polarization: 15.11 SS G_CDS: 0.60 Total: 15.71 kcal
Atomic # 6 Polarization: -22.33 SS G_CDS: 6.39 Total: -15.93 kcal
Atomic # 7 Polarization: -77.06 SS G_CDS: -1.24 Total: -78.30 kcal
Atomic # 8 Polarization: -37.15 SS G_CDS: -0.50 Total: -37.65 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.36 kcal
Total: -77.03 7.22 -69.82 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113139496.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.855 kcal
(2) G-P(sol) polarization free energy of solvation -77.034 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds