Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47487 * 2 1 4 4 C 1.34849 * 117.00183 * 180.02562 * 3 2 1 5 5 O 1.21618 * 120.00244 * 0.02562 * 4 3 2 6 6 C 1.46638 * 120.00099 * 180.02562 * 4 3 2 7 7 C 1.43200 * 119.99720 * 6.31007 * 6 4 3 8 8 N 5.00724 * 99.53716 * 2.83789 * 2 1 3 9 9 C 1.37928 * 119.99893 * 186.30531 * 6 4 3 10 10 N 1.35113 * 120.00044 * 7.79865 * 9 6 4 11 11 C 1.46509 * 119.99678 * 175.87454 * 10 9 6 12 12 C 1.50701 * 109.46942 * 180.02562 * 11 10 9 13 13 C 1.38323 * 119.96106 * 269.71965 * 12 11 10 14 14 C 1.38284 * 120.13900 * 179.76772 * 13 12 11 15 15 C 1.38125 * 120.06553 * 0.50884 * 14 13 12 16 16 C 1.38861 * 119.93000 * 359.74859 * 15 14 13 17 17 O 1.35752 * 120.06887 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00011 * 354.42695 * 17 16 15 19 19 H 1.08003 * 119.99748 * 5.07152 * 18 17 16 20 20 C 1.38651 * 120.00034 * 185.07227 * 18 17 16 21 21 N 1.31560 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47415 * 89.99995 * 22 20 18 24 24 H 1.48505 * 109.46927 * 209.99849 * 22 20 18 25 25 H 1.48503 * 109.46888 * 329.99446 * 22 20 18 26 26 C 1.38078 * 119.96816 * 89.99800 * 12 11 10 27 27 H 1.09010 * 109.46799 * 299.99717 * 1 2 3 28 28 H 1.08995 * 109.47587 * 59.99174 * 1 2 3 29 29 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46799 * 240.00283 * 2 1 3 31 31 H 1.08995 * 109.47587 * 120.00826 * 2 1 3 32 32 H 1.07997 * 119.99715 * 187.79817 * 9 6 4 33 33 H 0.96993 * 120.00250 * 355.87061 * 10 9 6 34 34 H 1.09005 * 109.46802 * 299.99869 * 11 10 9 35 35 H 1.08994 * 109.47094 * 59.99613 * 11 10 9 36 36 H 1.08002 * 119.93216 * 0.02562 * 13 12 11 37 37 H 1.07990 * 119.97225 * 180.25693 * 14 13 12 38 38 H 1.07999 * 120.03992 * 179.76701 * 15 14 13 39 39 H 0.97003 * 119.99635 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.03253 * 359.95240 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3509 1.5456 -0.0005 5 8 4.0918 0.5811 -0.0015 6 6 3.9115 2.9006 0.0000 7 6 3.0461 4.0333 0.1374 8 7 2.3596 4.9320 0.2445 9 6 5.2721 3.0841 -0.1317 10 7 6.0709 2.0328 -0.4185 11 6 7.5028 2.2419 -0.6476 12 6 8.1619 0.9201 -0.9467 13 6 8.6796 0.1573 0.0846 14 6 9.2809 -1.0584 -0.1851 15 6 9.3756 -1.5098 -1.4871 16 6 8.8617 -0.7439 -2.5251 17 8 8.9537 -1.1845 -3.8058 18 6 9.6564 -2.3161 -4.0148 19 1 10.0455 -2.8729 -3.1751 20 6 9.8795 -2.7649 -5.3075 21 7 10.5656 -3.8688 -5.5114 22 14 9.2070 -1.8014 -6.7597 23 1 10.2131 -0.8013 -7.1988 24 1 8.9140 -2.7328 -7.8787 25 1 7.9594 -1.1044 -6.3562 26 6 8.2536 0.4743 -2.2503 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 5.6990 4.0681 -0.0057 33 1 5.6965 1.1397 -0.4726 34 1 7.6408 2.9158 -1.4932 35 1 7.9532 2.6796 0.2432 36 1 8.6103 0.5100 1.1030 37 1 9.6804 -1.6537 0.6225 38 1 9.8487 -2.4576 -1.6977 39 1 10.7219 -4.1825 -6.4159 40 1 7.8525 1.0721 -3.0554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113139496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = -60.959966 kcal Electronic energy + Delta-G solvation = -24634.351526 eV Core-core repulsion = 20800.840857 eV Total energy + Delta-G solvation = -3833.510670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51536 -40.95574 -39.31322 -38.22951 -37.39644 -36.88883 -34.48390 -33.59718 -32.61494 -31.41442 -30.75263 -27.49411 -26.83910 -25.10686 -23.40290 -23.34432 -22.44780 -22.38470 -20.29383 -19.65308 -18.97987 -17.83981 -17.69217 -17.45740 -16.89087 -16.71364 -16.43497 -15.90757 -15.64965 -15.38404 -15.18570 -14.92346 -14.78190 -14.46748 -14.28651 -14.21485 -13.94672 -13.88773 -13.70623 -13.58041 -13.42587 -13.08255 -12.91245 -12.56101 -12.49985 -12.48484 -12.40419 -11.98617 -11.82873 -11.49869 -11.37378 -11.32241 -10.92836 -9.82241 -9.12757 -8.94757 -8.51418 -6.24489 0.25601 0.33107 0.65563 1.31248 1.34509 1.47485 1.50877 1.71976 1.99931 2.26501 2.33390 2.74535 2.80413 3.00454 3.14679 3.49372 3.72119 3.83260 4.02677 4.06206 4.10129 4.28212 4.32246 4.38709 4.41987 4.47789 4.56535 4.66617 4.71520 4.88015 4.90784 4.92699 5.13359 5.19583 5.36553 5.46987 5.59635 5.68405 5.73792 5.88515 5.94657 6.20479 6.35337 6.71714 6.83043 6.97031 7.56764 8.60209 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.002913 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.066360 B = 9610.840796 C =10312.723015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.369 6.369 4 C 0.527 3.473 5 O -0.559 6.559 6 C -0.319 4.319 7 C 0.314 3.686 8 N -0.502 5.502 9 C 0.349 3.651 10 N -0.661 5.661 11 C 0.143 3.857 12 C -0.072 4.072 13 C -0.156 4.156 14 C -0.082 4.082 15 C -0.231 4.231 16 C 0.113 3.887 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.263 1.263 26 C -0.168 4.168 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.416 0.584 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.285 0.715 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 13.846 13.117 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.286 6.286 4 C 0.379 3.621 5 O -0.454 6.454 6 C -0.336 4.336 7 C 0.002 3.998 8 N -0.183 5.183 9 C 0.196 3.804 10 N -0.281 5.281 11 C 0.022 3.978 12 C -0.072 4.072 13 C -0.175 4.175 14 C -0.100 4.100 15 C -0.250 4.250 16 C 0.065 3.935 17 O -0.153 6.153 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.187 1.187 26 C -0.188 4.188 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.266 0.734 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.174 0.826 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.966 14.766 12.872 22.450 hybrid contribution 0.237 -1.742 -0.873 1.963 sum -10.729 13.024 12.000 20.706 Atomic orbital electron populations 1.21815 0.91021 1.04213 1.03355 1.23200 0.96678 0.79339 1.02547 1.86613 1.24133 1.33314 1.84523 1.20761 0.80368 0.89214 0.71726 1.90531 1.59358 1.42986 1.52524 1.15630 0.90832 0.84260 1.42869 1.24855 0.92567 0.91705 0.90653 1.81244 1.08986 1.12201 1.15819 1.22556 0.86903 0.94642 0.76328 1.46153 1.09483 1.12494 1.60014 1.21020 0.77527 0.93485 1.05771 1.19570 0.99289 0.97052 0.91331 1.21142 1.01707 0.94840 0.99821 1.21164 0.97341 0.96751 0.94714 1.21417 1.07394 1.01893 0.94339 1.19670 0.95740 0.94128 0.84005 1.83512 1.66593 1.40899 1.24272 1.20684 1.31978 0.99536 0.95299 0.90188 1.25280 0.96182 0.96934 1.00473 1.69732 1.40029 1.22780 1.23939 0.85219 0.79627 0.78476 0.77419 1.18816 1.19492 1.18703 1.20420 1.05636 0.94585 0.98154 0.91473 0.91777 0.88194 0.91639 0.91064 0.75916 0.73449 0.86711 0.84976 0.82647 0.84314 0.87720 0.90584 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.29 71.98 0.74 -1.40 16 2 C 0.06 1.12 6.20 71.98 0.45 1.57 16 3 O -0.37 -9.10 9.77 -57.62 -0.56 -9.67 16 4 C 0.53 12.69 7.82 70.01 0.55 13.24 16 5 O -0.56 -15.30 13.43 19.45 0.26 -15.04 16 6 C -0.32 -5.75 5.90 -19.91 -0.12 -5.86 16 7 C 0.31 6.88 14.98 88.33 1.32 8.21 16 8 N -0.50 -13.50 18.54 19.00 0.35 -13.15 16 9 C 0.35 3.41 10.21 84.11 0.86 4.26 16 10 N -0.66 -9.07 5.41 -349.43 -1.89 -10.96 16 11 C 0.14 1.54 6.36 85.63 0.55 2.09 16 12 C -0.07 -1.64 5.25 -19.88 -0.10 -1.74 16 13 C -0.16 -3.63 9.70 22.30 0.22 -3.41 16 14 C -0.08 -2.47 10.04 22.25 0.22 -2.24 16 15 C -0.23 -9.44 9.17 22.39 0.21 -9.23 16 16 C 0.11 4.91 6.65 22.58 0.15 5.06 16 17 O -0.25 -12.75 8.59 -22.76 -0.20 -12.94 16 18 C -0.40 -22.90 9.95 67.92 0.68 -22.22 16 19 H 0.08 4.83 5.44 -2.91 -0.02 4.81 16 20 C 0.01 0.55 5.49 84.83 0.47 1.02 16 21 N -0.92 -54.50 13.96 21.61 0.30 -54.19 16 22 Si 0.97 44.40 28.62 68.60 1.96 46.36 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 C -0.17 -5.46 9.65 22.39 0.22 -5.24 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.42 8.77 4.89 -100.39 -0.49 8.28 16 34 H 0.11 0.79 8.08 -2.38 -0.02 0.77 16 35 H 0.13 0.45 8.08 -2.39 -0.02 0.43 16 36 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 3.43 8.06 -2.92 -0.02 3.41 16 38 H 0.10 4.84 5.64 -2.91 -0.02 4.83 16 39 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -77.03 360.65 7.22 -69.82 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.60 Total: 15.71 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 6.39 Total: -15.93 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.24 Total: -78.30 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.50 Total: -37.65 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.36 kcal Total: -77.03 7.22 -69.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113139496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.855 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds