Wall clock time and date at job start Tue Mar 31 2020 10:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 117.00103 * 2 1 4 4 C 1.38766 * 119.98828 * 180.02562 * 3 2 1 5 5 C 1.38040 * 120.01151 * 179.97438 * 4 3 2 6 6 C 1.38874 * 119.98990 * 359.97438 * 5 4 3 7 7 N 1.40176 * 120.01263 * 179.97438 * 6 5 4 8 8 C 1.35855 * 124.95018 * 179.97438 * 7 6 5 9 9 C 1.35349 * 107.14178 * 179.74761 * 8 7 6 10 10 C 1.41559 * 105.55751 * 0.41549 * 9 8 7 11 11 C 1.47523 * 126.45407 * 179.83863 * 10 9 8 12 12 O 1.21498 * 119.99540 * 359.71648 * 11 10 9 13 13 O 1.34733 * 120.00143 * 179.71635 * 11 10 9 14 14 C 1.45203 * 116.99886 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47297 * 29.99215 * 14 13 11 16 16 C 1.53004 * 109.46646 * 269.99711 * 14 13 11 17 17 C 1.50699 * 109.47222 * 149.99827 * 14 13 11 18 18 H 1.07997 * 120.00215 * 34.99874 * 17 14 13 19 19 C 1.37882 * 119.99838 * 214.99107 * 17 14 13 20 20 N 1.31514 * 119.99909 * 184.91347 * 19 17 14 21 21 Si 1.86798 * 119.99902 * 4.91699 * 19 17 14 22 22 H 1.48504 * 109.47128 * 84.83287 * 21 19 17 23 23 H 1.48503 * 109.46913 * 204.83004 * 21 19 17 24 24 H 1.48497 * 109.47280 * 324.83247 * 21 19 17 25 25 N 1.28477 * 124.95398 * 0.03114 * 7 6 5 26 26 C 1.38868 * 119.97145 * 0.25484 * 6 5 4 27 27 C 1.38045 * 119.98582 * 359.49626 * 26 6 5 28 28 H 1.08999 * 109.47170 * 299.99968 * 1 2 3 29 29 H 1.08999 * 109.47464 * 60.00072 * 1 2 3 30 30 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99461 * 359.95108 * 4 3 2 32 32 H 1.08003 * 120.00801 * 180.02562 * 5 4 3 33 33 H 1.07996 * 126.42764 * 0.02562 * 8 7 6 34 34 H 1.08001 * 127.21833 * 180.25587 * 9 8 7 35 35 H 1.08998 * 109.47207 * 55.03095 * 16 14 13 36 36 H 1.09001 * 109.46759 * 175.03443 * 16 14 13 37 37 H 1.09003 * 109.46859 * 295.03136 * 16 14 13 38 38 H 0.97001 * 119.99767 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.00481 * 179.74608 * 26 6 5 40 40 H 1.08006 * 119.99232 * 180.25513 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4318 1.2834 -0.0005 5 6 4.0591 2.5131 -0.0011 6 6 3.3030 3.6779 -0.0016 7 7 3.9394 4.9269 -0.0016 8 6 3.3006 6.1259 -0.0026 9 6 4.2544 7.0861 0.0035 10 6 5.4895 6.3944 -0.0018 11 6 6.8341 7.0014 -0.0016 12 8 6.9548 8.2103 -0.0019 13 8 7.9282 6.2151 -0.0013 14 6 9.2185 6.8810 -0.0006 15 1 9.1330 7.8384 0.5132 16 6 9.6724 7.1150 -1.4429 17 6 10.2289 6.0179 0.7102 18 1 10.1737 4.9425 0.6277 19 6 11.2240 6.6012 1.4657 20 7 12.1620 5.8547 2.0065 21 14 11.2395 8.4515 1.7211 22 1 10.3584 8.8009 2.8643 23 1 12.6256 8.8997 2.0095 24 1 10.7470 9.1250 0.4927 25 7 5.2118 5.1046 -0.0017 26 6 1.9162 3.6049 0.0037 27 6 1.2901 2.3746 -0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0198 0.3774 -0.0002 32 1 5.1376 2.5693 -0.0019 33 1 2.2322 6.2833 -0.0031 34 1 4.1047 8.1557 0.0084 35 1 8.9006 7.6643 -1.9820 36 1 10.5970 7.6923 -1.4437 37 1 9.8429 6.1551 -1.9304 38 1 12.8618 6.2651 2.5383 39 1 1.3277 4.5105 0.0075 40 1 0.2115 2.3178 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:15 Heat of formation + Delta-G solvation = -27.807689 kcal Electronic energy + Delta-G solvation = -24953.496202 eV Core-core repulsion = 21121.423123 eV Total energy + Delta-G solvation = -3832.073079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.01229 -41.26461 -41.00616 -38.62561 -37.63728 -35.21344 -34.32826 -32.75654 -32.60246 -31.59432 -30.16040 -28.18555 -27.49890 -26.03063 -24.51432 -23.46050 -22.37096 -22.01869 -21.12998 -19.76823 -19.36023 -18.88381 -18.42122 -17.68975 -17.44996 -17.04889 -16.71285 -16.50152 -16.24430 -15.72505 -15.27735 -14.92399 -14.81786 -14.62891 -14.43128 -14.35492 -14.05163 -13.85387 -13.80679 -13.58755 -13.04631 -12.94029 -12.89395 -12.61172 -12.27356 -12.12165 -12.02275 -11.81639 -11.73525 -11.46951 -11.22625 -10.91020 -10.85171 -10.38773 -10.22645 -8.96518 -8.48673 -6.59242 -0.37091 0.14864 0.45971 1.19096 1.21681 1.26629 1.28575 1.39903 1.93781 2.06432 2.19395 2.29916 2.60591 2.87985 3.18771 3.64338 3.69534 3.80943 3.96971 4.04848 4.17923 4.25012 4.40259 4.46327 4.48703 4.53185 4.55365 4.57369 4.61747 4.74263 4.80971 4.86089 4.89066 5.08116 5.14223 5.24943 5.28281 5.34053 5.43293 5.52748 5.89986 6.09566 6.33732 6.48366 6.61942 6.90741 7.08479 8.66985 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.002707 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.895734 B =10341.204889 C =11233.554937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.131 3.869 4 C -0.143 4.143 5 C -0.083 4.083 6 C 0.064 3.936 7 N -0.224 5.224 8 C 0.004 3.996 9 C -0.175 4.175 10 C -0.026 4.026 11 C 0.537 3.463 12 O -0.534 6.534 13 O -0.351 6.351 14 C 0.181 3.819 15 H 0.042 0.958 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.043 0.957 19 C 0.034 3.966 20 N -0.923 5.923 21 Si 0.931 3.069 22 H -0.268 1.268 23 H -0.262 1.262 24 H -0.247 1.247 25 N -0.268 5.268 26 C -0.066 4.066 27 C -0.178 4.178 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.246 0.754 34 H 0.188 0.812 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.277 0.723 39 H 0.177 0.823 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.601 -6.422 -5.091 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.244 6.244 3 C 0.084 3.916 4 C -0.162 4.162 5 C -0.102 4.102 6 C -0.025 4.025 7 N -0.007 5.007 8 C -0.135 4.135 9 C -0.201 4.201 10 C -0.182 4.182 11 C 0.381 3.619 12 O -0.423 6.423 13 O -0.266 6.266 14 C 0.128 3.872 15 H 0.060 0.940 16 C -0.204 4.204 17 C -0.570 4.570 18 H 0.061 0.939 19 C -0.167 4.167 20 N -0.560 5.560 21 Si 0.753 3.247 22 H -0.194 1.194 23 H -0.187 1.187 24 H -0.170 1.170 25 N -0.104 5.104 26 C -0.086 4.086 27 C -0.197 4.197 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.262 0.738 34 H 0.205 0.795 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.194 0.806 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -30.754 -7.377 -4.986 32.017 hybrid contribution 0.606 1.362 0.384 1.539 sum -30.148 -6.015 -4.603 31.085 Atomic orbital electron populations 1.23469 0.75762 1.05937 1.02953 1.86105 1.24053 1.26282 1.87981 1.19259 0.92021 0.85510 0.94782 1.20417 0.92562 0.97771 1.05470 1.20812 1.00671 0.90747 0.98008 1.17930 0.92810 0.80989 1.10815 1.43076 1.02599 1.06799 1.48249 1.23805 1.02278 0.81639 1.05804 1.22126 0.88080 1.02365 1.07564 1.21059 0.92730 0.90600 1.13815 1.20178 0.84867 0.84740 0.72069 1.90735 1.87588 1.15506 1.48496 1.86786 1.16122 1.41945 1.81748 1.20941 0.76904 0.93279 0.96126 0.94025 1.22143 1.00946 1.01559 0.95744 1.20889 1.10249 0.94174 1.31705 0.93871 1.25721 0.94303 1.03406 0.93309 1.69964 1.14209 1.38226 1.33622 0.85980 0.78703 0.79611 0.80381 1.19362 1.18675 1.17021 1.73747 0.98252 1.19747 1.18657 1.21006 0.89581 1.00626 0.97374 1.21441 1.02114 0.89904 1.06233 0.90927 0.90834 0.86560 0.83658 0.85687 0.73764 0.79484 0.93269 0.91038 0.92255 0.91323 0.80572 0.80419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.59 10.50 -92.67 -0.97 -5.57 16 3 C 0.13 2.02 6.69 22.52 0.15 2.17 16 4 C -0.14 -2.83 9.98 22.35 0.22 -2.61 16 5 C -0.08 -2.01 9.59 22.38 0.21 -1.80 16 6 C 0.06 1.40 6.66 38.11 0.25 1.65 16 7 N -0.22 -6.01 3.52 -187.24 -0.66 -6.67 16 8 C 0.00 0.07 10.78 83.40 0.90 0.97 16 9 C -0.17 -4.72 10.80 22.42 0.24 -4.47 16 10 C -0.03 -0.98 7.16 42.40 0.30 -0.68 16 11 C 0.54 25.20 7.94 70.27 0.56 25.76 16 12 O -0.53 -25.80 16.18 19.84 0.32 -25.48 16 13 O -0.35 -18.62 9.87 -56.43 -0.56 -19.17 16 14 C 0.18 9.81 2.23 29.85 0.07 9.87 16 15 H 0.04 2.29 4.31 -2.39 -0.01 2.28 16 16 C -0.15 -6.85 9.53 71.98 0.69 -6.16 16 17 C -0.53 -32.87 9.25 25.60 0.24 -32.63 16 18 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 19 C 0.03 2.02 5.47 84.66 0.46 2.48 16 20 N -0.92 -57.75 13.96 21.45 0.30 -57.45 16 21 Si 0.93 45.49 26.99 68.60 1.85 47.34 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.25 -11.47 6.82 99.48 0.68 -10.79 16 25 N -0.27 -9.94 11.17 -48.22 -0.54 -10.48 16 26 C -0.07 -0.80 9.42 22.37 0.21 -0.59 16 27 C -0.18 -1.80 9.03 22.35 0.20 -1.60 16 28 H 0.07 0.12 7.66 -2.39 -0.02 0.11 16 29 H 0.07 0.11 7.66 -2.39 -0.02 0.09 16 30 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.13 3.67 7.64 -2.91 -0.02 3.65 16 33 H 0.25 1.48 6.95 -2.91 -0.02 1.46 16 34 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 37 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.18 0.68 6.64 -2.91 -0.02 0.66 16 40 H 0.18 0.43 6.29 -2.91 -0.02 0.41 16 Total: -1.00 -83.26 349.74 6.61 -76.64 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.05 Total: 7.30 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.82 Total: -6.47 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -0.90 Total: -74.60 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -1.21 Total: -50.22 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.85 Total: 47.34 kcal Total: -83.26 6.61 -76.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.836 kcal (2) G-P(sol) polarization free energy of solvation -83.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds