Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47456 * 2 1 4 4 C 1.50705 * 109.47130 * 120.00144 * 2 1 3 5 5 O 1.21282 * 120.00533 * 119.99624 * 4 2 1 6 6 N 1.34782 * 119.99468 * 299.99547 * 4 2 1 7 7 C 1.39921 * 119.99512 * 176.14179 * 6 4 2 8 8 C 1.38878 * 120.06937 * 214.99465 * 7 6 4 9 9 C 1.38114 * 119.92684 * 179.79455 * 8 7 6 10 10 C 1.38277 * 120.07130 * 0.48799 * 9 8 7 11 11 C 1.50701 * 119.93071 * 179.76699 * 10 9 8 12 12 F 1.39905 * 109.47095 * 269.97617 * 11 10 9 13 13 F 1.39895 * 109.47161 * 29.97664 * 11 10 9 14 14 F 1.39903 * 109.47293 * 149.97481 * 11 10 9 15 15 C 1.38286 * 120.14268 * 359.74173 * 10 9 8 16 16 C 1.38112 * 120.07093 * 0.02562 * 15 10 9 17 17 N 1.46500 * 109.46756 * 239.99593 * 2 1 3 18 18 C 1.46503 * 120.00457 * 300.00031 * 17 2 1 19 19 C 1.36937 * 119.99750 * 120.00458 * 17 2 1 20 20 H 1.08003 * 120.00320 * 33.35949 * 19 17 2 21 21 C 1.38818 * 120.00002 * 213.35686 * 19 17 2 22 22 N 1.31617 * 119.99627 * 5.74308 * 21 19 17 23 23 Si 1.86799 * 119.99970 * 185.73765 * 21 19 17 24 24 H 1.48503 * 109.46894 * 90.00585 * 23 21 19 25 25 H 1.48507 * 109.46981 * 210.00213 * 23 21 19 26 26 H 1.48490 * 109.47417 * 330.00160 * 23 21 19 27 27 H 1.09001 * 109.47004 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.46975 * 59.99775 * 1 2 3 29 29 H 1.09000 * 109.47456 * 180.02562 * 1 2 3 30 30 H 0.96992 * 120.00126 * 356.14696 * 6 4 2 31 31 H 1.07994 * 120.03669 * 0.02786 * 8 7 6 32 32 H 1.07993 * 119.96223 * 180.22777 * 9 8 7 33 33 H 1.07996 * 119.96659 * 179.97438 * 15 10 9 34 34 H 1.07996 * 120.03634 * 179.97438 * 16 15 10 35 35 H 1.09004 * 109.46812 * 85.37096 * 18 17 2 36 36 H 1.08995 * 109.47495 * 205.37720 * 18 17 2 37 37 H 1.09004 * 109.46684 * 325.37818 * 18 17 2 38 38 H 0.97004 * 119.99667 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1052 -0.9545 3.5959 8 6 1.2810 -0.9929 4.7130 9 6 1.6752 -1.6928 5.8365 10 6 2.8936 -2.3466 5.8534 11 6 3.3229 -3.1050 7.0828 12 9 4.0339 -2.2512 7.9329 13 9 2.1930 -3.5914 7.7490 14 9 4.1405 -4.1767 6.7079 15 6 3.7187 -2.3064 4.7444 16 6 3.3281 -1.6122 3.6161 17 7 2.0183 -0.6907 -1.1961 18 6 1.6643 -2.0933 -1.4280 19 6 2.8056 -0.0253 -2.0975 20 1 3.4947 0.7331 -1.7563 21 6 2.7181 -0.3255 -3.4500 22 7 1.8012 -1.1665 -3.8794 23 14 3.9014 0.4643 -4.6605 24 1 5.1074 -0.3904 -4.8030 25 1 3.2369 0.6068 -5.9810 26 1 4.3005 1.8042 -4.1601 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.1963 0.5699 2.5443 31 1 0.3311 -0.4790 4.7019 32 1 1.0331 -1.7261 6.7041 33 1 4.6698 -2.8177 4.7608 34 1 3.9731 -1.5808 2.7505 35 1 0.6967 -2.1461 -1.9270 36 1 2.4230 -2.5605 -2.0558 37 1 1.6099 -2.6168 -0.4734 38 1 1.7403 -1.3766 -4.8245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120773145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = -131.979514 kcal Electronic energy + Delta-G solvation = -26136.720334 eV Core-core repulsion = 21758.273285 eV Total energy + Delta-G solvation = -4378.447049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.27815 -47.79752 -47.74209 -40.49196 -38.66424 -35.65197 -34.70743 -32.28600 -31.23399 -30.74737 -29.11907 -26.05756 -25.81854 -24.19633 -23.27624 -22.53902 -21.25694 -19.60396 -18.63744 -18.57044 -18.43895 -17.69247 -16.90710 -16.39159 -15.25580 -15.00481 -14.97209 -14.63972 -14.58029 -14.40399 -14.21209 -14.14160 -13.99487 -13.90898 -13.66449 -13.47749 -13.27913 -13.06125 -12.77005 -12.48411 -11.89005 -11.67240 -11.54328 -11.37982 -10.97267 -10.89783 -10.70084 -10.50445 -10.31627 -10.15273 -9.99789 -9.31777 -9.09041 -8.57697 -8.33255 -6.73057 -5.83278 -3.39041 0.79155 1.15910 2.55505 2.92701 3.13565 3.33954 3.40259 3.40914 3.49283 3.64222 3.91474 4.31583 4.41348 4.65940 4.69968 5.08966 5.10205 5.24909 5.33515 5.39889 5.45730 5.74725 5.82656 5.84394 5.86535 6.08342 6.14057 6.19623 6.34938 6.43914 6.75450 6.84490 6.98090 7.39670 7.53047 7.68806 7.74763 8.33227 8.52682 9.14734 9.72184 10.26308 11.22159 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.002735 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.048958 B =10235.950970 C =10619.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.094 0.906 4 C 0.491 3.509 5 O -0.500 6.500 6 N -0.685 5.685 7 C 0.195 3.805 8 C -0.158 4.158 9 C -0.051 4.051 10 C -0.215 4.215 11 C 0.511 3.489 12 F -0.180 7.180 13 F -0.180 7.180 14 F -0.179 7.179 15 C -0.050 4.050 16 C -0.127 4.127 17 N -0.567 5.567 18 C 0.162 3.838 19 C -0.269 4.269 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.898 5.898 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.410 0.590 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.018 0.982 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 1.241 20.459 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.112 0.888 4 C 0.278 3.722 5 O -0.371 6.371 6 N -0.332 5.332 7 C 0.098 3.902 8 C -0.178 4.178 9 C -0.070 4.070 10 C -0.217 4.217 11 C 0.457 3.543 12 F -0.162 7.162 13 F -0.162 7.162 14 F -0.160 7.160 15 C -0.069 4.069 16 C -0.148 4.148 17 N -0.287 5.287 18 C 0.018 3.982 19 C -0.399 4.399 20 H 0.082 0.918 21 C -0.185 4.185 22 N -0.540 5.540 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.491 0.423 20.029 20.089 hybrid contribution 0.376 0.526 -0.407 0.764 sum -1.114 0.949 19.622 19.676 Atomic orbital electron populations 1.22222 0.95895 1.01982 1.01251 1.20301 0.93573 0.96100 0.85402 0.88814 1.23433 0.79266 0.85199 0.84346 1.90635 1.35071 1.25560 1.85822 1.44303 1.56928 1.27452 1.04544 1.18152 0.92092 0.93040 0.86929 1.20893 1.00025 1.03591 0.93314 1.20635 0.94011 0.94047 0.98307 1.19840 0.99685 1.07602 0.94607 1.18308 0.74700 0.77474 0.83783 1.93214 1.79230 1.70488 1.73224 1.93171 1.51666 1.88728 1.82612 1.93188 1.73686 1.57814 1.91306 1.20838 0.98838 0.96119 0.91064 1.21381 0.95579 0.98959 0.98845 1.43562 1.57515 1.08210 1.19403 1.20787 0.99001 0.83076 0.95353 1.19122 1.14778 1.19491 0.86505 0.91819 1.25248 0.97343 0.98693 0.97175 1.70031 1.33492 1.36215 1.14254 0.86224 0.80305 0.79209 0.80550 1.21251 1.21527 1.20273 0.93819 0.91032 0.92820 0.75344 0.84623 0.84714 0.84669 0.83083 0.96385 0.93312 0.97221 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.09 37.16 0.34 -2.13 16 2 C 0.16 3.02 3.13 -69.08 -0.22 2.80 16 3 H 0.09 1.65 7.89 -51.93 -0.41 1.24 16 4 C 0.49 8.63 6.76 -10.98 -0.07 8.55 16 5 O -0.50 -10.66 11.89 5.56 0.07 -10.59 16 6 N -0.69 -8.81 5.20 -9.86 -0.05 -8.86 16 7 C 0.19 2.50 6.29 -83.69 -0.53 1.97 16 8 C -0.16 -1.61 9.97 -39.39 -0.39 -2.00 16 9 C -0.05 -0.51 9.39 -39.61 -0.37 -0.89 16 10 C -0.22 -2.44 5.46 -104.59 -0.57 -3.01 16 11 C 0.51 5.62 3.36 36.01 0.12 5.74 16 12 F -0.18 -2.00 17.30 2.25 0.04 -1.96 16 13 F -0.18 -1.95 16.46 2.25 0.04 -1.92 16 14 F -0.18 -2.08 16.46 2.25 0.04 -2.04 16 15 C -0.05 -0.61 9.39 -39.61 -0.37 -0.98 16 16 C -0.13 -1.78 8.69 -39.39 -0.34 -2.12 16 17 N -0.57 -13.94 2.55 -174.80 -0.45 -14.38 16 18 C 0.16 4.10 7.70 59.85 0.46 4.56 16 19 C -0.27 -7.23 9.46 -15.06 -0.14 -7.37 16 20 H 0.06 1.67 7.83 -52.48 -0.41 1.25 16 21 C 0.02 0.43 5.17 -17.43 -0.09 0.34 16 22 N -0.90 -25.65 11.07 55.49 0.61 -25.03 16 23 Si 0.91 21.32 29.56 -169.99 -5.02 16.30 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.41 3.82 8.36 -40.82 -0.34 3.47 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 33 H 0.14 1.46 7.60 -52.49 -0.40 1.06 16 34 H 0.15 2.44 6.26 -52.49 -0.33 2.11 16 35 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 36 H 0.05 1.35 7.22 -51.93 -0.37 0.98 16 37 H 0.01 0.23 6.16 -51.93 -0.32 -0.09 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -31.15 332.15 -6.06 -37.22 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.16 Total: 0.81 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.18 Total: 5.46 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.12 Total: -48.28 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.15 -6.06 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120773145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.763 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds