Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47456 * 2 1 4 4 C 1.50705 * 109.47130 * 120.00144 * 2 1 3 5 5 O 1.21282 * 120.00533 * 119.99624 * 4 2 1 6 6 N 1.34782 * 119.99468 * 299.99547 * 4 2 1 7 7 C 1.39921 * 119.99512 * 176.14179 * 6 4 2 8 8 C 1.38878 * 120.06937 * 214.99465 * 7 6 4 9 9 C 1.38114 * 119.92684 * 179.79455 * 8 7 6 10 10 C 1.38277 * 120.07130 * 0.48799 * 9 8 7 11 11 C 1.50701 * 119.93071 * 179.76699 * 10 9 8 12 12 F 1.39905 * 109.47095 * 269.97617 * 11 10 9 13 13 F 1.39895 * 109.47161 * 29.97664 * 11 10 9 14 14 F 1.39903 * 109.47293 * 149.97481 * 11 10 9 15 15 C 1.38286 * 120.14268 * 359.74173 * 10 9 8 16 16 C 1.38112 * 120.07093 * 0.02562 * 15 10 9 17 17 N 1.46500 * 109.46756 * 239.99593 * 2 1 3 18 18 C 1.46503 * 120.00457 * 300.00031 * 17 2 1 19 19 C 1.36937 * 119.99750 * 120.00458 * 17 2 1 20 20 H 1.08003 * 120.00320 * 33.35949 * 19 17 2 21 21 C 1.38818 * 120.00002 * 213.35686 * 19 17 2 22 22 N 1.31617 * 119.99627 * 5.74308 * 21 19 17 23 23 Si 1.86799 * 119.99970 * 185.73765 * 21 19 17 24 24 H 1.48503 * 109.46894 * 90.00585 * 23 21 19 25 25 H 1.48507 * 109.46981 * 210.00213 * 23 21 19 26 26 H 1.48490 * 109.47417 * 330.00160 * 23 21 19 27 27 H 1.09001 * 109.47004 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.46975 * 59.99775 * 1 2 3 29 29 H 1.09000 * 109.47456 * 180.02562 * 1 2 3 30 30 H 0.96992 * 120.00126 * 356.14696 * 6 4 2 31 31 H 1.07994 * 120.03669 * 0.02786 * 8 7 6 32 32 H 1.07993 * 119.96223 * 180.22777 * 9 8 7 33 33 H 1.07996 * 119.96659 * 179.97438 * 15 10 9 34 34 H 1.07996 * 120.03634 * 179.97438 * 16 15 10 35 35 H 1.09004 * 109.46812 * 85.37096 * 18 17 2 36 36 H 1.08995 * 109.47495 * 205.37720 * 18 17 2 37 37 H 1.09004 * 109.46684 * 325.37818 * 18 17 2 38 38 H 0.97004 * 119.99667 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1052 -0.9545 3.5959 8 6 1.2810 -0.9929 4.7130 9 6 1.6752 -1.6928 5.8365 10 6 2.8936 -2.3466 5.8534 11 6 3.3229 -3.1050 7.0828 12 9 4.0339 -2.2512 7.9329 13 9 2.1930 -3.5914 7.7490 14 9 4.1405 -4.1767 6.7079 15 6 3.7187 -2.3064 4.7444 16 6 3.3281 -1.6122 3.6161 17 7 2.0183 -0.6907 -1.1961 18 6 1.6643 -2.0933 -1.4280 19 6 2.8056 -0.0253 -2.0975 20 1 3.4947 0.7331 -1.7563 21 6 2.7181 -0.3255 -3.4500 22 7 1.8012 -1.1665 -3.8794 23 14 3.9014 0.4643 -4.6605 24 1 5.1074 -0.3904 -4.8030 25 1 3.2369 0.6068 -5.9810 26 1 4.3005 1.8042 -4.1601 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.1963 0.5699 2.5443 31 1 0.3311 -0.4790 4.7019 32 1 1.0331 -1.7261 6.7041 33 1 4.6698 -2.8177 4.7608 34 1 3.9731 -1.5808 2.7505 35 1 0.6967 -2.1461 -1.9270 36 1 2.4230 -2.5605 -2.0558 37 1 1.6099 -2.6168 -0.4734 38 1 1.7403 -1.3766 -4.8245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120773145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = -150.525749 kcal Electronic energy + Delta-G solvation = -26137.524559 eV Core-core repulsion = 21758.273285 eV Total energy + Delta-G solvation = -4379.251274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.15835 -48.68011 -48.62103 -41.67512 -39.82445 -37.34647 -35.97005 -34.04920 -32.13423 -32.02338 -30.67168 -28.02087 -26.89782 -25.73471 -24.30565 -23.85836 -22.49722 -20.97103 -19.52491 -19.45926 -19.34716 -19.06269 -18.54133 -17.79369 -16.88962 -16.41364 -15.98782 -15.80611 -15.67663 -15.51053 -15.38699 -15.11529 -15.04110 -14.84832 -14.78919 -14.71411 -14.46159 -14.34167 -14.19207 -13.95035 -13.18861 -13.12841 -12.85892 -12.71988 -12.68725 -12.49884 -12.36025 -12.20497 -12.12934 -11.87910 -11.50557 -10.78756 -10.56820 -10.07590 -9.37480 -8.70111 -7.88192 -5.46347 -0.16188 0.26689 1.46234 1.48424 1.56697 1.61628 1.66732 2.00202 2.49520 2.52692 2.75515 3.03720 3.28881 3.43970 3.58197 3.74764 3.87050 3.95221 4.22646 4.34402 4.37026 4.44055 4.50302 4.84763 4.85840 4.94400 4.96879 5.02730 5.16976 5.24441 5.31025 5.36414 5.41605 5.60172 5.62730 5.83638 6.30874 6.46988 7.09860 7.22789 7.77426 8.27267 9.16228 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.002735 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.048958 B =10235.950970 C =10619.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 H 0.108 0.892 4 C 0.498 3.502 5 O -0.545 6.545 6 N -0.663 5.663 7 C 0.175 3.825 8 C -0.139 4.139 9 C -0.046 4.046 10 C -0.216 4.216 11 C 0.516 3.484 12 F -0.180 7.180 13 F -0.176 7.176 14 F -0.184 7.184 15 C -0.057 4.057 16 C -0.148 4.148 17 N -0.588 5.588 18 C 0.187 3.813 19 C -0.277 4.277 20 H 0.068 0.932 21 C -0.039 4.039 22 N -0.931 5.931 23 Si 0.971 3.029 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.262 1.262 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.430 0.570 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.001 0.999 36 H 0.011 0.989 37 H 0.018 0.982 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 2.826 22.935 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.041 3.959 3 H 0.126 0.874 4 C 0.285 3.715 5 O -0.420 6.420 6 N -0.311 5.311 7 C 0.079 3.921 8 C -0.159 4.159 9 C -0.065 4.065 10 C -0.218 4.218 11 C 0.462 3.538 12 F -0.161 7.161 13 F -0.158 7.158 14 F -0.166 7.166 15 C -0.076 4.076 16 C -0.169 4.169 17 N -0.309 5.309 18 C 0.042 3.958 19 C -0.407 4.407 20 H 0.085 0.915 21 C -0.236 4.236 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.186 1.186 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.271 0.729 31 H 0.191 0.809 32 H 0.183 0.817 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.019 0.981 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.655 2.068 22.591 22.840 hybrid contribution 0.744 0.030 -0.970 1.223 sum -1.911 2.098 21.621 21.806 Atomic orbital electron populations 1.22080 0.93318 1.01609 1.03106 1.20590 0.95381 0.96287 0.83657 0.87389 1.22812 0.78763 0.84478 0.85452 1.90637 1.37142 1.27578 1.86641 1.43776 1.56193 1.27897 1.03202 1.18285 0.92413 0.93798 0.87582 1.21217 1.00550 1.02452 0.91672 1.21037 0.93535 0.92727 0.99199 1.19978 1.00141 1.07517 0.94197 1.18223 0.74669 0.77260 0.83666 1.93217 1.79265 1.70462 1.73196 1.93179 1.51407 1.88681 1.82512 1.93182 1.73901 1.58120 1.91371 1.20865 0.99471 0.96185 0.91064 1.21225 0.96403 1.00670 0.98569 1.43693 1.58171 1.07991 1.21083 1.20374 0.96684 0.84159 0.94603 1.19464 1.15040 1.18973 0.87206 0.91451 1.26008 0.99088 0.99555 0.98924 1.70179 1.35328 1.37875 1.14118 0.85230 0.77921 0.78812 0.78192 1.21785 1.21687 1.18629 0.88365 0.92675 0.94281 0.72948 0.80899 0.81701 0.84275 0.86081 0.98120 0.96973 0.96391 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.09 71.98 0.65 -3.62 16 2 C 0.15 5.60 3.13 44.25 0.14 5.74 16 3 H 0.11 3.61 7.89 -2.39 -0.02 3.59 16 4 C 0.50 17.08 6.76 87.66 0.59 17.67 16 5 O -0.54 -23.71 11.89 -3.04 -0.04 -23.74 16 6 N -0.66 -15.39 5.20 -303.49 -1.58 -16.96 16 7 C 0.18 4.11 6.29 38.16 0.24 4.35 16 8 C -0.14 -2.25 9.97 22.39 0.22 -2.03 16 9 C -0.05 -0.75 9.39 22.25 0.21 -0.54 16 10 C -0.22 -4.42 5.46 -19.84 -0.11 -4.53 16 11 C 0.52 10.27 3.36 71.24 0.24 10.51 16 12 F -0.18 -3.64 17.30 44.97 0.78 -2.86 16 13 F -0.18 -3.34 16.46 44.97 0.74 -2.60 16 14 F -0.18 -4.07 16.46 44.97 0.74 -3.33 16 15 C -0.06 -1.36 9.39 22.25 0.21 -1.15 16 16 C -0.15 -4.13 8.69 22.39 0.19 -3.93 16 17 N -0.59 -29.39 2.55 -706.95 -1.80 -31.19 16 18 C 0.19 9.83 7.70 127.77 0.98 10.82 16 19 C -0.28 -15.05 9.46 84.03 0.80 -14.25 16 20 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 21 C -0.04 -2.17 5.17 84.86 0.44 -1.73 16 22 N -0.93 -54.86 11.07 21.65 0.24 -54.62 16 23 Si 0.97 44.45 29.56 68.60 2.03 46.47 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 27 H 0.10 1.86 7.66 -2.39 -0.02 1.84 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.29 7.67 -2.39 -0.02 1.27 16 30 H 0.43 6.25 8.36 -92.71 -0.78 5.48 16 31 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.17 1.72 7.60 -2.91 -0.02 1.70 16 33 H 0.14 3.05 7.60 -2.91 -0.02 3.03 16 34 H 0.12 4.12 6.26 -2.91 -0.02 4.10 16 35 H 0.00 0.03 7.73 -2.38 -0.02 0.01 16 36 H 0.01 0.67 7.22 -2.39 -0.02 0.66 16 37 H 0.02 0.89 6.16 -2.38 -0.01 0.88 16 38 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -70.61 332.15 6.26 -64.36 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.34 Total: 7.18 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 4.81 Total: 17.29 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.14 Total: -102.78 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.26 Total: -8.78 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.61 6.26 -64.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120773145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.169 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds