Wall clock time and date at job start Tue Mar 31 2020 11:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46716 * 2 1 4 4 C 1.46504 * 120.00372 * 269.99765 * 3 2 1 5 5 C 1.50699 * 109.47349 * 270.00466 * 4 3 2 6 6 H 1.08003 * 119.99948 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00159 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99891 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46949 * 90.00404 * 9 7 5 11 11 H 1.48499 * 109.47417 * 210.00214 * 9 7 5 12 12 H 1.48501 * 109.47606 * 330.00582 * 9 7 5 13 13 C 1.34774 * 119.99943 * 90.00530 * 3 2 1 14 14 O 1.21277 * 120.00370 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99729 * 359.97438 * 13 3 2 16 16 N 1.46505 * 109.46947 * 179.97438 * 15 13 3 17 17 C 1.39799 * 119.99946 * 179.97438 * 16 15 13 18 18 C 1.38869 * 120.02960 * 359.72639 * 17 16 15 19 19 C 1.38343 * 119.96626 * 180.27741 * 18 17 16 20 20 F 1.35105 * 119.97938 * 180.02562 * 19 18 17 21 21 C 1.38613 * 120.03563 * 359.97438 * 19 18 17 22 22 F 1.35103 * 119.97061 * 179.97438 * 21 19 18 23 23 C 1.38615 * 120.05578 * 0.02562 * 21 19 18 24 24 F 1.35095 * 119.98171 * 179.97438 * 23 21 19 25 25 C 1.38338 * 120.03087 * 0.02562 * 23 21 19 26 26 H 1.08995 * 109.46947 * 299.99648 * 1 2 3 27 27 H 1.09003 * 109.47308 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46667 * 240.00262 * 2 1 3 30 30 H 1.08999 * 109.47256 * 120.00393 * 2 1 3 31 31 H 1.08999 * 109.46604 * 30.00306 * 4 3 2 32 32 H 1.09002 * 109.46911 * 150.00325 * 4 3 2 33 33 H 0.96994 * 120.00221 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47019 * 60.00778 * 15 13 3 35 35 H 1.09000 * 109.47164 * 299.99759 * 15 13 3 36 36 H 0.96995 * 120.00000 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.01176 * 0.27414 * 18 17 16 38 38 H 1.07998 * 120.01416 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3899 -2.8779 8 7 5.3909 2.1829 -3.2579 9 14 3.0123 3.4342 -3.9298 10 1 3.1146 4.8547 -3.5090 11 1 3.4056 3.3110 -5.3564 12 1 1.6128 2.9674 -3.7601 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9914 1.3061 2.4723 16 7 2.3094 2.2034 3.5859 17 6 2.1534 1.7643 4.9039 18 6 1.6915 0.4796 5.1583 19 6 1.5321 0.0484 6.4631 20 9 1.0833 -1.2016 6.7109 21 6 1.8336 0.8977 7.5163 22 9 1.6770 0.4753 8.7900 23 6 2.2947 2.1802 7.2637 24 9 2.5877 3.0069 8.2913 25 6 2.4541 2.6144 5.9599 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5817 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 5.7170 2.5734 -4.0837 34 1 2.6214 0.4186 2.5302 35 1 0.9433 1.0124 2.5299 36 1 2.6276 3.1024 3.4087 37 1 1.4568 -0.1824 4.3379 38 1 2.8129 3.6139 5.7634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121898578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:57 Heat of formation + Delta-G solvation = -135.778608 kcal Electronic energy + Delta-G solvation = -25707.781198 eV Core-core repulsion = 21329.169409 eV Total energy + Delta-G solvation = -4378.611790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.82438 -49.36999 -48.49762 -40.01823 -39.06147 -35.88026 -35.11595 -32.84913 -30.93189 -30.58548 -30.00173 -28.24398 -26.39713 -23.69498 -23.18898 -22.80080 -21.92754 -19.25034 -18.59152 -18.02397 -17.71290 -17.10408 -16.89202 -16.87189 -16.40765 -15.71797 -15.64497 -15.53369 -15.33359 -15.15549 -14.97599 -14.63589 -14.40894 -14.20960 -13.70629 -13.58977 -13.16542 -12.82896 -12.70936 -12.60544 -12.40781 -12.18300 -11.93744 -11.81930 -11.57512 -11.12556 -10.92432 -10.62673 -10.29024 -10.14060 -9.69196 -9.40092 -9.23771 -8.70056 -7.99806 -7.87003 -6.19619 -4.19877 0.54466 0.72321 2.72030 2.93907 3.00647 3.20444 3.26116 3.28115 3.33535 3.63628 3.95693 4.08194 4.29163 4.29757 4.56969 4.61809 4.82087 4.99782 5.08469 5.13477 5.20014 5.31525 5.36828 5.41775 5.53147 5.55507 5.64988 5.80120 5.98787 6.22932 6.28928 6.50440 6.72545 6.79801 7.08170 7.35319 7.47117 7.95759 8.31620 8.59815 8.82758 9.39508 10.93527 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.002780 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.821564 B =10070.051878 C =10774.816441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.584 5.584 4 C 0.217 3.783 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.503 3.497 14 O -0.536 6.536 15 C 0.096 3.904 16 N -0.712 5.712 17 C 0.276 3.724 18 C -0.226 4.226 19 C 0.153 3.847 20 F -0.120 7.120 21 C -0.041 4.041 22 F -0.127 7.127 23 C 0.152 3.848 24 F -0.120 7.120 25 C -0.217 4.217 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.420 0.580 37 H 0.152 0.848 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -4.898 16.286 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.315 5.315 4 C 0.096 3.904 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.289 3.711 14 O -0.413 6.413 15 C -0.032 4.032 16 N -0.341 5.341 17 C 0.167 3.833 18 C -0.250 4.250 19 C 0.131 3.869 20 F -0.098 7.098 21 C -0.064 4.064 22 F -0.106 7.106 23 C 0.130 3.870 24 F -0.098 7.098 25 C -0.241 4.241 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.260 0.740 37 H 0.169 0.831 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.337 -4.398 15.979 19.532 hybrid contribution -0.331 0.586 -0.326 0.748 sum -10.667 -3.812 15.653 19.322 Atomic orbital electron populations 1.22248 0.96378 1.01966 1.02383 1.21549 0.93662 0.83447 1.03592 1.47906 1.63274 1.13535 1.06825 1.19713 0.97582 0.93382 0.79679 1.21280 0.95209 1.33338 1.07367 0.90711 1.24853 0.95005 0.95736 0.97313 1.69884 1.15129 1.44677 1.23564 0.86853 0.81371 0.81566 0.79896 1.19877 1.20970 1.19066 1.20057 0.78904 0.87059 0.85105 1.90683 1.45950 1.18034 1.86680 1.21365 1.02251 0.93814 0.85748 1.44613 1.70936 1.17938 1.00657 1.17082 0.90345 0.91077 0.84793 1.20496 1.11883 0.97237 0.95351 1.16913 0.97990 0.79935 0.92028 1.91555 1.86166 1.37148 1.94962 1.17190 1.15562 0.93972 0.79646 1.91508 1.94346 1.90002 1.34776 1.16882 0.98962 0.86365 0.84751 1.91553 1.90570 1.70512 1.57202 1.20434 1.11948 1.02778 0.88959 0.92934 0.92023 0.91613 0.89200 0.91214 0.94932 0.94465 0.92415 0.88764 0.88939 0.73994 0.83074 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.10 1.30 5.93 -4.04 -0.02 1.28 16 3 N -0.58 -10.39 2.46 -175.05 -0.43 -10.82 16 4 C 0.22 4.85 4.23 -5.19 -0.02 4.83 16 5 C -0.53 -14.43 9.94 -34.44 -0.34 -14.78 16 6 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 13 C 0.50 8.63 7.74 -10.98 -0.09 8.55 16 14 O -0.54 -11.39 15.25 5.56 0.08 -11.30 16 15 C 0.10 1.10 3.95 -5.19 -0.02 1.08 16 16 N -0.71 -8.04 5.71 -59.79 -0.34 -8.38 16 17 C 0.28 2.78 6.65 -83.76 -0.56 2.22 16 18 C -0.23 -2.12 9.29 -39.31 -0.37 -2.49 16 19 C 0.15 1.61 7.30 -39.40 -0.29 1.32 16 20 F -0.12 -1.33 17.18 2.25 0.04 -1.29 16 21 C -0.04 -0.46 7.31 -39.30 -0.29 -0.75 16 22 F -0.13 -1.61 17.09 2.25 0.04 -1.58 16 23 C 0.15 1.64 7.30 -39.41 -0.29 1.35 16 24 F -0.12 -1.37 17.18 2.25 0.04 -1.33 16 25 C -0.22 -2.12 9.87 -39.31 -0.39 -2.51 16 26 H 0.05 0.49 7.22 -51.93 -0.37 0.12 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 0.94 7.22 -51.93 -0.37 0.57 16 35 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 36 H 0.42 5.18 7.45 -40.82 -0.30 4.87 16 37 H 0.15 1.15 6.73 -52.49 -0.35 0.80 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -31.73 337.04 -5.88 -37.60 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.11 Total: 1.26 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.38 Total: 0.69 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.00 Total: -45.05 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.12 Total: -4.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.73 -5.88 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121898578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.175 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds