Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46716 * 2 1 4 4 C 1.46504 * 120.00372 * 269.99765 * 3 2 1 5 5 C 1.50699 * 109.47349 * 270.00466 * 4 3 2 6 6 H 1.08003 * 119.99948 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00159 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99891 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46949 * 90.00404 * 9 7 5 11 11 H 1.48499 * 109.47417 * 210.00214 * 9 7 5 12 12 H 1.48501 * 109.47606 * 330.00582 * 9 7 5 13 13 C 1.34774 * 119.99943 * 90.00530 * 3 2 1 14 14 O 1.21277 * 120.00370 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99729 * 359.97438 * 13 3 2 16 16 N 1.46505 * 109.46947 * 179.97438 * 15 13 3 17 17 C 1.39799 * 119.99946 * 179.97438 * 16 15 13 18 18 C 1.38869 * 120.02960 * 359.72639 * 17 16 15 19 19 C 1.38343 * 119.96626 * 180.27741 * 18 17 16 20 20 F 1.35105 * 119.97938 * 180.02562 * 19 18 17 21 21 C 1.38613 * 120.03563 * 359.97438 * 19 18 17 22 22 F 1.35103 * 119.97061 * 179.97438 * 21 19 18 23 23 C 1.38615 * 120.05578 * 0.02562 * 21 19 18 24 24 F 1.35095 * 119.98171 * 179.97438 * 23 21 19 25 25 C 1.38338 * 120.03087 * 0.02562 * 23 21 19 26 26 H 1.08995 * 109.46947 * 299.99648 * 1 2 3 27 27 H 1.09003 * 109.47308 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46667 * 240.00262 * 2 1 3 30 30 H 1.08999 * 109.47256 * 120.00393 * 2 1 3 31 31 H 1.08999 * 109.46604 * 30.00306 * 4 3 2 32 32 H 1.09002 * 109.46911 * 150.00325 * 4 3 2 33 33 H 0.96994 * 120.00221 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47019 * 60.00778 * 15 13 3 35 35 H 1.09000 * 109.47164 * 299.99759 * 15 13 3 36 36 H 0.96995 * 120.00000 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.01176 * 0.27414 * 18 17 16 38 38 H 1.07998 * 120.01416 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3899 -2.8779 8 7 5.3909 2.1829 -3.2579 9 14 3.0123 3.4342 -3.9298 10 1 3.1146 4.8547 -3.5090 11 1 3.4056 3.3110 -5.3564 12 1 1.6128 2.9674 -3.7601 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9914 1.3061 2.4723 16 7 2.3094 2.2034 3.5859 17 6 2.1534 1.7643 4.9039 18 6 1.6915 0.4796 5.1583 19 6 1.5321 0.0484 6.4631 20 9 1.0833 -1.2016 6.7109 21 6 1.8336 0.8977 7.5163 22 9 1.6770 0.4753 8.7900 23 6 2.2947 2.1802 7.2637 24 9 2.5877 3.0069 8.2913 25 6 2.4541 2.6144 5.9599 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5817 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 5.7170 2.5734 -4.0837 34 1 2.6214 0.4186 2.5302 35 1 0.9433 1.0124 2.5299 36 1 2.6276 3.1024 3.4087 37 1 1.4568 -0.1824 4.3379 38 1 2.8129 3.6139 5.7634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121898578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -156.191108 kcal Electronic energy + Delta-G solvation = -25708.666351 eV Core-core repulsion = 21329.169409 eV Total energy + Delta-G solvation = -4379.496942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.69351 -50.20852 -49.38598 -41.14748 -40.07975 -37.17895 -36.11104 -34.83867 -32.03275 -31.65742 -30.94082 -29.63273 -27.57913 -24.67123 -24.37488 -24.00108 -23.02353 -20.34581 -19.59704 -19.12482 -18.93431 -18.57741 -18.01066 -17.73131 -17.55362 -16.80860 -16.70351 -16.48641 -16.35736 -16.12896 -15.94717 -15.88188 -15.50962 -15.30284 -14.74781 -14.70107 -14.60391 -14.22788 -13.78224 -13.63256 -13.49531 -13.40335 -13.19333 -12.98056 -12.63436 -12.53012 -12.37084 -12.04327 -11.89316 -11.74086 -11.00003 -10.83749 -10.80965 -10.02195 -9.47439 -8.70404 -8.33993 -6.39163 -0.23294 -0.10783 1.33553 1.36895 1.44895 1.65351 1.78487 2.20021 2.30595 2.33482 2.62427 3.00909 3.15077 3.23561 3.46469 3.52491 3.87575 3.99673 4.12305 4.25726 4.32788 4.44968 4.53146 4.60161 4.66597 4.78404 4.81617 4.89908 4.91603 5.03586 5.05775 5.42981 5.45885 5.48049 5.60449 5.92356 6.21998 6.41417 6.62926 6.66122 7.18404 7.31474 8.82719 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.002780 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.821564 B =10070.051878 C =10774.816441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.535 4.535 6 H 0.032 0.968 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.236 1.236 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.108 3.892 16 N -0.719 5.719 17 C 0.276 3.724 18 C -0.211 4.211 19 C 0.150 3.850 20 F -0.123 7.123 21 C -0.055 4.055 22 F -0.139 7.139 23 C 0.144 3.856 24 F -0.127 7.127 25 C -0.210 4.210 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.414 0.586 37 H 0.178 0.822 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 -5.808 16.509 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.323 5.323 4 C 0.103 3.897 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.159 1.159 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.168 3.832 18 C -0.234 4.234 19 C 0.128 3.872 20 F -0.101 7.101 21 C -0.078 4.078 22 F -0.118 7.118 23 C 0.123 3.877 24 F -0.105 7.105 25 C -0.234 4.234 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.253 0.747 37 H 0.195 0.805 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.760 -5.369 16.236 21.337 hybrid contribution 0.485 0.817 -0.330 1.006 sum -12.275 -4.552 15.906 20.601 Atomic orbital electron populations 1.22188 0.93816 1.03835 1.02294 1.21896 0.95699 0.80728 1.04599 1.47986 1.63444 1.15326 1.05585 1.19316 0.94745 0.93143 0.82509 1.21566 0.97118 1.32013 1.06667 0.95014 1.25829 0.96601 0.97237 0.99027 1.70043 1.17468 1.46566 1.24490 0.85753 0.80596 0.79054 0.77774 1.20262 1.20402 1.15943 1.21037 0.77437 0.86693 0.86661 1.90656 1.48035 1.20494 1.87620 1.21413 1.04871 0.93291 0.82321 1.44605 1.71432 1.17744 1.00952 1.17067 0.90595 0.91401 0.84186 1.20682 1.10276 0.97020 0.95454 1.16940 0.98284 0.79735 0.92205 1.91549 1.86256 1.37297 1.95026 1.17441 1.16307 0.94539 0.79493 1.91473 1.94511 1.90164 1.35653 1.16935 0.99577 0.86239 0.84959 1.91534 1.90731 1.70686 1.57582 1.20556 1.11035 1.03335 0.88476 0.91470 0.93702 0.88705 0.90864 0.87696 0.93259 0.96179 0.92331 0.86516 0.85242 0.74689 0.80513 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 71.98 0.74 -1.95 16 2 C 0.09 2.12 5.93 86.38 0.51 2.63 16 3 N -0.59 -20.25 2.46 -826.14 -2.03 -22.28 16 4 C 0.23 9.98 4.23 85.63 0.36 10.34 16 5 C -0.54 -29.63 9.94 25.60 0.25 -29.37 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.63 5.47 84.65 0.46 1.09 16 8 N -0.95 -58.03 13.96 21.45 0.30 -57.73 16 9 Si 0.95 42.51 27.47 68.60 1.88 44.40 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 13 C 0.49 16.21 7.74 87.66 0.68 16.89 16 14 O -0.59 -25.03 15.25 -3.02 -0.05 -25.07 16 15 C 0.11 2.09 3.95 85.63 0.34 2.43 16 16 N -0.72 -14.37 5.71 -343.08 -1.96 -16.33 16 17 C 0.28 4.78 6.65 38.17 0.25 5.04 16 18 C -0.21 -3.22 9.29 22.45 0.21 -3.01 16 19 C 0.15 2.81 7.30 22.38 0.16 2.98 16 20 F -0.12 -2.44 17.18 44.97 0.77 -1.67 16 21 C -0.05 -1.19 7.31 22.45 0.16 -1.02 16 22 F -0.14 -3.45 17.09 44.97 0.77 -2.68 16 23 C 0.14 2.95 7.30 22.38 0.16 3.11 16 24 F -0.13 -2.83 17.18 44.97 0.77 -2.06 16 25 C -0.21 -3.73 9.87 22.44 0.22 -3.51 16 26 H 0.07 0.93 7.22 -2.39 -0.02 0.91 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 30 H 0.10 1.64 6.44 -2.39 -0.02 1.63 16 31 H 0.05 2.02 7.13 -2.39 -0.02 2.00 16 32 H 0.02 0.96 6.85 -2.39 -0.02 0.95 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.12 1.80 7.22 -2.39 -0.02 1.78 16 35 H 0.13 1.60 6.98 -2.39 -0.02 1.59 16 36 H 0.41 9.68 7.45 -92.71 -0.69 8.99 16 37 H 0.18 1.75 6.73 -2.91 -0.02 1.73 16 38 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.91 337.04 5.36 -67.55 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.38 Total: 10.24 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 4.52 Total: 5.64 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -3.69 Total: -96.34 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 2.31 Total: -6.41 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.40 kcal Total: -72.91 5.36 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121898578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.641 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds