Wall clock time and date at job start Tue Mar 31 2020 11:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35661 * 117.00539 * 2 1 4 4 C 1.39077 * 119.88651 * 179.97438 * 3 2 1 5 5 C 1.37116 * 120.11591 * 180.02562 * 4 3 2 6 6 C 1.40047 * 119.88418 * 359.97438 * 5 4 3 7 7 C 1.46847 * 120.11494 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00611 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00211 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47701 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47696 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99595 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00524 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00279 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00102 * 17.72321 * 14 13 11 16 16 C 1.38947 * 120.00249 * 197.72183 * 14 13 11 17 17 N 1.31414 * 119.99658 * 21.39435 * 16 14 13 18 18 Si 1.86793 * 120.00363 * 201.39847 * 16 14 13 19 19 H 1.48502 * 109.47388 * 59.99750 * 18 16 14 20 20 H 1.48503 * 109.47455 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47171 * 300.00006 * 18 16 14 22 22 C 1.46500 * 120.00025 * 359.97438 * 13 11 10 23 23 C 1.47200 * 109.47330 * 84.23109 * 22 13 11 24 24 N 9.85781 * 143.87093 * 155.16657 * 3 1 2 25 25 C 1.40043 * 119.76858 * 0.27817 * 6 5 4 26 26 C 1.37118 * 119.88262 * 359.46426 * 25 6 5 27 27 H 1.09003 * 109.46730 * 59.99651 * 1 2 3 28 28 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47003 * 300.00363 * 1 2 3 30 30 H 1.07995 * 119.94555 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.06352 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47164 * 300.00514 * 9 7 6 33 33 H 1.09002 * 109.46949 * 59.99875 * 9 7 6 34 34 H 1.09002 * 109.46589 * 300.00078 * 10 9 7 35 35 H 1.09002 * 109.47211 * 59.99803 * 10 9 7 36 36 H 0.97003 * 120.00075 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47287 * 204.23478 * 22 13 11 38 38 H 1.09005 * 109.46586 * 324.23509 * 22 13 11 39 39 H 1.07997 * 120.05658 * 179.69446 * 25 6 5 40 40 H 1.07998 * 119.94388 * 180.25446 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4340 1.2786 0.0005 5 6 4.0615 2.4978 0.0011 6 6 3.3012 3.6739 0.0005 7 6 3.9679 4.9822 0.0005 8 8 5.1792 5.0458 0.0005 9 6 3.1473 6.2462 0.0005 10 6 4.0793 7.4596 -0.0001 11 6 3.2587 8.7235 -0.0008 12 8 2.0473 8.6600 -0.0012 13 7 3.8705 9.9243 -0.0009 14 6 3.1239 11.0741 -0.0020 15 1 2.0824 11.0420 0.2820 16 6 3.7071 12.2809 -0.3684 17 7 4.8004 12.2876 -1.0975 18 14 2.9373 13.8936 0.1755 19 1 2.9001 13.9490 1.6590 20 1 3.7454 15.0271 -0.3416 21 1 1.5545 13.9868 -0.3581 22 6 5.3335 10.0009 0.0002 23 6 5.8319 9.8866 -1.3801 24 7 6.2153 9.8009 -2.4410 25 6 1.9028 3.5978 0.0053 26 6 1.2852 2.3736 -0.0006 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0194 0.3711 0.0005 31 1 5.1402 2.5511 0.0019 32 1 2.5184 6.2711 -0.8894 33 1 2.5184 6.2711 0.8905 34 1 4.7084 7.4348 0.8897 35 1 4.7078 7.4345 -0.8903 36 1 5.2074 13.1300 -1.3537 37 1 5.6471 10.9560 0.4218 38 1 5.7395 9.1874 0.6016 39 1 1.3120 4.5018 0.0099 40 1 0.2069 2.3139 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126554127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:12 Heat of formation + Delta-G solvation = -65.154646 kcal Electronic energy + Delta-G solvation = -24922.192234 eV Core-core repulsion = 21088.499670 eV Total energy + Delta-G solvation = -3833.692565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45927 -40.76656 -40.09069 -38.03993 -37.65266 -36.24744 -34.10683 -33.53518 -32.23134 -31.46931 -29.22545 -28.58015 -27.47844 -25.74985 -24.15206 -23.12398 -21.01373 -20.36943 -19.72448 -19.26360 -18.40437 -18.03586 -17.43801 -17.13285 -16.77937 -16.62317 -16.39083 -15.93341 -15.72016 -15.38427 -15.28930 -14.74140 -14.64067 -14.57710 -14.15583 -14.06305 -13.75480 -13.69202 -13.47830 -13.32791 -13.12475 -12.93122 -12.82879 -12.70349 -12.33116 -12.22373 -12.12058 -12.02815 -11.95666 -11.79800 -11.09293 -10.70813 -10.40908 -10.14647 -9.91300 -9.29801 -8.38517 -5.94572 -0.31072 0.34638 1.42156 1.42482 1.49937 1.58999 1.82911 2.07437 2.26718 2.27663 2.36895 2.77378 2.87323 3.02267 3.32686 3.60959 3.69990 3.84562 3.86308 4.08622 4.16393 4.21110 4.31648 4.39562 4.41364 4.48718 4.54134 4.62132 4.75761 4.78056 4.88807 4.96329 4.98668 5.05382 5.13322 5.25363 5.40670 5.50335 5.62214 6.04439 6.31975 6.40402 6.55936 6.99817 7.12987 7.37148 7.93078 8.65260 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.002557 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.203918 B =10945.683961 C =11794.135921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.156 3.844 4 C -0.174 4.174 5 C -0.028 4.028 6 C -0.226 4.226 7 C 0.407 3.593 8 O -0.488 6.488 9 C -0.141 4.141 10 C -0.118 4.118 11 C 0.452 3.548 12 O -0.610 6.610 13 N -0.456 5.456 14 C -0.341 4.341 15 H 0.087 0.913 16 C 0.002 3.998 17 N -0.895 5.895 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.221 3.779 23 C 0.259 3.741 24 N -0.508 5.508 25 C -0.027 4.027 26 C -0.222 4.222 27 H 0.068 0.932 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.274 0.726 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.151 0.849 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -20.785 6.903 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.109 3.891 4 C -0.193 4.193 5 C -0.046 4.046 6 C -0.227 4.227 7 C 0.288 3.712 8 O -0.367 6.367 9 C -0.178 4.178 10 C -0.158 4.158 11 C 0.243 3.757 12 O -0.496 6.496 13 N -0.176 5.176 14 C -0.468 4.468 15 H 0.105 0.895 16 C -0.199 4.199 17 N -0.533 5.533 18 Si 0.813 3.187 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.094 3.906 23 C -0.059 4.059 24 N -0.189 5.189 25 C -0.045 4.045 26 C -0.240 4.240 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.769 -20.948 5.264 22.119 hybrid contribution -0.620 1.379 0.096 1.515 sum -5.389 -19.569 5.360 20.993 Atomic orbital electron populations 1.23457 0.75902 1.05968 1.02733 1.86022 1.23943 1.26583 1.87388 1.19574 0.92600 0.84888 0.92048 1.20449 0.91812 0.98951 1.08049 1.21188 1.00767 0.90667 0.91990 1.20394 0.95122 0.94258 1.12956 1.22511 0.88572 0.90369 0.69708 1.90505 1.17428 1.90074 1.38654 1.21694 0.98924 0.90890 1.06323 1.21352 0.98445 0.91263 1.04742 1.20878 0.88463 0.85373 0.81030 1.90495 1.15844 1.87391 1.55833 1.43816 1.04491 1.05363 1.63947 1.19620 0.96637 0.84666 1.45869 0.89542 1.25936 0.97237 1.02260 0.94514 1.69955 1.22366 1.28734 1.32280 0.85056 0.77619 0.76751 0.79284 1.18436 1.20738 1.20681 1.19054 0.80741 1.06209 0.84580 1.29588 0.91496 0.89018 0.95820 1.80683 1.11209 1.13760 1.13242 1.21422 0.92880 0.98960 0.91256 1.21389 1.01794 0.91384 1.09451 0.91386 0.86056 0.91196 0.83286 0.84275 0.87984 0.86386 0.87069 0.90561 0.91621 0.85730 0.84886 0.83112 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.12 10.48 -89.78 -0.94 -6.06 16 3 C 0.16 2.77 6.70 22.67 0.15 2.92 16 4 C -0.17 -3.26 9.95 22.21 0.22 -3.04 16 5 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 6 C -0.23 -5.27 5.87 -20.15 -0.12 -5.39 16 7 C 0.41 11.24 7.11 27.94 0.20 11.44 16 8 O -0.49 -15.96 15.97 -3.07 -0.05 -16.01 16 9 C -0.14 -4.03 3.59 29.85 0.11 -3.92 16 10 C -0.12 -4.00 3.59 29.84 0.11 -3.89 16 11 C 0.45 19.84 7.57 87.66 0.66 20.51 16 12 O -0.61 -30.45 15.63 -3.09 -0.05 -30.50 16 13 N -0.46 -21.10 2.60 -645.41 -1.68 -22.77 16 14 C -0.34 -17.51 9.32 84.04 0.78 -16.73 16 15 H 0.09 4.73 7.39 -2.91 -0.02 4.71 16 16 C 0.00 0.12 4.87 84.93 0.41 0.54 16 17 N -0.89 -45.08 9.48 21.66 0.21 -44.87 16 18 Si 0.99 39.82 29.60 68.60 2.03 41.85 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.22 8.67 4.91 84.57 0.42 9.09 16 23 C 0.26 11.61 12.93 89.50 1.16 12.76 16 24 N -0.51 -24.83 18.51 19.95 0.37 -24.46 16 25 C -0.03 -0.52 9.44 22.44 0.21 -0.30 16 26 C -0.22 -3.59 8.99 22.21 0.20 -3.39 16 27 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 28 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.40 7.65 -2.39 -0.02 0.39 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.14 2.95 7.64 -2.91 -0.02 2.93 16 32 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 33 H 0.12 3.07 8.03 -2.39 -0.02 3.05 16 34 H 0.11 3.23 7.37 -2.39 -0.02 3.21 16 35 H 0.08 2.75 7.47 -2.39 -0.02 2.73 16 36 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 37 H 0.13 4.99 6.46 -2.39 -0.02 4.97 16 38 H 0.13 3.90 6.68 -2.38 -0.02 3.88 16 39 H 0.15 2.50 7.04 -2.91 -0.02 2.48 16 40 H 0.16 1.68 6.27 -2.91 -0.02 1.66 16 Total: -1.00 -70.16 350.00 6.81 -63.35 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.08 Total: 18.05 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.84 Total: 21.41 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -1.10 Total: -92.10 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.04 Total: -52.56 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -70.16 6.81 -63.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126554127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.801 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds