Wall clock time and date at job start Tue Mar 31 2020 10:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21252 * 119.99649 * 2 1 4 4 C 1.47185 * 120.00053 * 180.02562 * 2 1 3 5 5 C 1.39871 * 120.14739 * 0.02562 * 4 2 1 6 6 C 1.37892 * 119.94035 * 180.02562 * 5 4 2 7 7 C 1.38328 * 120.23016 * 0.02562 * 6 5 4 8 8 C 1.38844 * 120.30110 * 0.02562 * 7 6 5 9 9 O 1.35912 * 119.97776 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99443 * 359.42822 * 9 8 7 11 11 H 1.08996 * 109.47538 * 33.87580 * 10 9 8 12 12 C 1.53003 * 109.46830 * 273.87541 * 10 9 8 13 13 C 1.50701 * 109.46949 * 153.88040 * 10 9 8 14 14 O 1.21288 * 120.00257 * 15.38144 * 13 10 9 15 15 N 1.34776 * 119.99645 * 195.38911 * 13 10 9 16 16 C 1.37098 * 120.00107 * 185.29315 * 15 13 10 17 17 H 1.08008 * 119.99947 * 25.36909 * 16 15 13 18 18 C 1.38945 * 120.00507 * 205.37490 * 16 15 13 19 19 N 1.31420 * 119.99706 * 9.49099 * 18 16 15 20 20 Si 1.86801 * 120.00404 * 189.48876 * 18 16 15 21 21 H 1.48496 * 109.46975 * 59.99983 * 20 18 16 22 22 H 1.48496 * 109.47179 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47186 * 300.00138 * 20 18 16 24 24 C 1.46503 * 120.00202 * 5.29107 * 15 13 10 25 25 C 1.47193 * 109.47187 * 83.78805 * 24 15 13 26 26 N 8.56482 * 123.59046 * 205.18223 * 2 1 3 27 27 C 1.38426 * 120.05668 * 0.25327 * 8 7 6 28 28 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47333 * 299.99668 * 1 2 3 30 30 H 1.09007 * 109.47563 * 60.00180 * 1 2 3 31 31 H 1.08009 * 120.02665 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.88273 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.85235 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47092 * 175.39114 * 12 10 9 35 35 H 1.08993 * 109.47381 * 55.38861 * 12 10 9 36 36 H 1.09004 * 109.47246 * 295.38336 * 12 10 9 37 37 H 0.97001 * 119.99526 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.46853 * 203.78703 * 24 15 13 39 39 H 1.08995 * 109.46832 * 323.78571 * 24 15 13 40 40 H 1.08002 * 120.12077 * 179.72058 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1131 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5467 -2.4878 -0.0017 6 6 2.2404 -3.6795 -0.0016 7 6 3.6237 -3.6800 0.0000 8 6 4.3247 -2.4815 0.0021 9 8 5.6838 -2.4897 0.0042 10 6 6.3247 -3.7669 0.0168 11 1 5.7260 -4.4795 -0.5504 12 6 6.4642 -4.2533 1.4607 13 6 7.6912 -3.6493 -0.6078 14 8 8.1932 -2.5568 -0.7672 15 7 8.3553 -4.7583 -0.9894 16 6 9.6404 -4.6610 -1.4568 17 1 10.2623 -3.8300 -1.1578 18 6 10.1429 -5.6311 -2.3153 19 7 9.3388 -6.5357 -2.8271 20 14 11.9615 -5.6496 -2.7418 21 1 12.7592 -5.8205 -1.5010 22 1 12.2412 -6.7756 -3.6685 23 1 12.3299 -4.3675 -3.3944 24 6 7.7039 -6.0678 -0.9048 25 6 6.8828 -6.2860 -2.1068 26 7 6.2455 -6.4565 -3.0358 27 6 3.6406 -1.2782 0.0080 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.4666 -2.4911 -0.0025 32 1 1.7019 -4.6156 -0.0021 33 1 4.1609 -4.6169 -0.0005 34 1 6.8779 -5.2617 1.4661 35 1 5.4843 -4.2601 1.9381 36 1 7.1298 -3.5847 2.0067 37 1 9.6895 -7.2128 -3.4267 38 1 8.4627 -6.8473 -0.8367 39 1 7.0685 -6.1010 -0.0198 40 1 4.1848 -0.3453 0.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126556794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:42 Heat of formation + Delta-G solvation = -53.856828 kcal Electronic energy + Delta-G solvation = -25845.353612 eV Core-core repulsion = 22012.150957 eV Total energy + Delta-G solvation = -3833.202654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79729 -40.85739 -39.96964 -38.17881 -37.54851 -36.16641 -34.18649 -32.86520 -32.74206 -31.31212 -29.80336 -29.22836 -27.21257 -25.55746 -24.49745 -23.37132 -21.69299 -20.38529 -19.81810 -19.31857 -18.42303 -17.89916 -17.42326 -16.97487 -16.83099 -16.60486 -16.17870 -16.02754 -16.00356 -15.58961 -15.32983 -14.85768 -14.72910 -14.57122 -14.16603 -13.95347 -13.62756 -13.48878 -13.30640 -13.24304 -13.16569 -13.03614 -12.91012 -12.87735 -12.54182 -12.43701 -12.18694 -12.14344 -12.05144 -11.88066 -11.16306 -10.85504 -10.49853 -10.11260 -9.98245 -9.30476 -8.43443 -6.11419 -0.44329 0.37201 1.34060 1.37381 1.43715 1.51980 1.62255 1.86224 2.05837 2.18732 2.34408 2.74050 2.96850 2.97639 3.17271 3.45978 3.57235 3.73532 3.79808 3.91867 3.98805 4.04006 4.15218 4.27899 4.37697 4.47076 4.66999 4.68229 4.69003 4.83823 4.87128 4.88673 5.06874 5.16904 5.25977 5.26406 5.38397 5.40654 5.66248 5.93954 6.25135 6.40646 6.49259 6.95995 7.02476 7.20899 7.76169 8.58785 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003182 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.163120 B = 8798.560141 C = 9286.146130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.394 3.606 3 O -0.508 6.508 4 C -0.149 4.149 5 C -0.096 4.096 6 C -0.082 4.082 7 C -0.185 4.185 8 C 0.097 3.903 9 O -0.318 6.318 10 C 0.075 3.925 11 H 0.099 0.901 12 C -0.167 4.167 13 C 0.451 3.549 14 O -0.605 6.605 15 N -0.445 5.445 16 C -0.337 4.337 17 H 0.081 0.919 18 C 0.008 3.992 19 N -0.896 5.896 20 Si 0.992 3.008 21 H -0.256 1.256 22 H -0.277 1.277 23 H -0.287 1.287 24 C 0.216 3.784 25 C 0.254 3.746 26 N -0.503 5.503 27 C -0.127 4.127 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.276 0.724 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -2.481 10.910 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.275 3.725 3 O -0.387 6.387 4 C -0.150 4.150 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.203 4.203 8 C 0.052 3.948 9 O -0.231 6.231 10 C 0.016 3.984 11 H 0.116 0.884 12 C -0.224 4.224 13 C 0.239 3.761 14 O -0.489 6.489 15 N -0.166 5.166 16 C -0.464 4.464 17 H 0.099 0.901 18 C -0.194 4.194 19 N -0.534 5.534 20 Si 0.816 3.184 21 H -0.180 1.180 22 H -0.202 1.202 23 H -0.213 1.213 24 C 0.090 3.910 25 C -0.064 4.064 26 N -0.184 5.184 27 C -0.146 4.146 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.200 0.800 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.168 -1.666 9.340 20.496 hybrid contribution 1.966 0.247 -0.556 2.058 sum -16.201 -1.419 8.784 18.484 Atomic orbital electron populations 1.22277 0.89001 1.07343 1.06042 1.23294 0.93978 0.86306 0.68890 1.90547 1.73592 1.35860 1.38717 1.20583 0.92136 0.97021 1.05223 1.21876 1.02198 0.89636 0.97694 1.21442 0.92160 1.00250 0.96108 1.21869 0.97060 0.96726 1.04651 1.19254 0.82274 0.95192 0.98049 1.86210 1.17097 1.31344 1.88465 1.22324 0.91227 0.84541 1.00318 0.88355 1.22378 1.05029 1.03462 0.91546 1.20628 0.87324 0.84441 0.83661 1.90551 1.70159 1.28155 1.60026 1.43594 1.12586 1.04070 1.56330 1.19612 0.87599 1.11386 1.27781 0.90096 1.25982 1.03929 0.95553 0.93953 1.69739 1.36055 1.17188 1.30457 0.85000 0.77476 0.77255 0.78699 1.18014 1.20165 1.21324 1.19273 0.95023 0.88138 0.88540 1.29844 0.89970 0.91750 0.94795 1.81055 1.16615 1.09717 1.11051 1.20668 0.94453 0.96131 1.03393 0.86526 0.87279 0.87681 0.79963 0.80849 0.83511 0.87141 0.88468 0.91912 0.91326 0.84812 0.84525 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 10.19 71.23 0.73 -1.15 16 2 C 0.39 8.75 7.23 28.04 0.20 8.95 16 3 O -0.51 -16.29 17.09 -2.94 -0.05 -16.34 16 4 C -0.15 -3.50 5.87 -20.16 -0.12 -3.62 16 5 C -0.10 -1.45 9.45 22.58 0.21 -1.24 16 6 C -0.08 -1.32 10.02 22.21 0.22 -1.10 16 7 C -0.18 -4.37 8.44 22.44 0.19 -4.18 16 8 C 0.10 3.15 6.57 22.46 0.15 3.30 16 9 O -0.32 -12.65 9.37 -73.99 -0.69 -13.34 16 10 C 0.08 2.65 1.81 29.85 0.05 2.71 16 11 H 0.10 3.09 4.50 -2.39 -0.01 3.08 16 12 C -0.17 -4.16 9.03 71.98 0.65 -3.51 16 13 C 0.45 21.20 6.84 87.66 0.60 21.80 16 14 O -0.61 -35.02 16.33 15.52 0.25 -34.77 16 15 N -0.44 -20.32 2.59 -645.43 -1.67 -21.99 16 16 C -0.34 -17.29 9.21 84.04 0.77 -16.51 16 17 H 0.08 4.48 7.51 -2.91 -0.02 4.45 16 18 C 0.01 0.38 5.10 84.92 0.43 0.81 16 19 N -0.90 -43.41 9.13 21.66 0.20 -43.21 16 20 Si 0.99 39.86 29.56 68.60 2.03 41.89 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.22 7.75 4.78 84.57 0.40 8.15 16 25 C 0.25 10.49 12.64 89.40 1.13 11.62 16 26 N -0.50 -22.79 18.56 20.05 0.37 -22.42 16 27 C -0.13 -4.10 9.54 22.69 0.22 -3.88 16 28 H 0.12 0.37 5.60 -2.39 -0.01 0.36 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.18 0.94 5.92 -2.91 -0.02 0.92 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.15 3.04 5.71 -2.91 -0.02 3.02 16 34 H 0.11 2.08 6.06 -2.38 -0.01 2.07 16 35 H 0.10 1.86 7.53 -2.39 -0.02 1.85 16 36 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 38 H 0.13 4.84 6.63 -2.39 -0.02 4.83 16 39 H 0.14 3.30 4.76 -2.39 -0.01 3.29 16 40 H 0.11 4.06 7.65 -2.91 -0.02 4.04 16 Total: -1.00 -80.91 343.34 7.39 -73.52 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.11 Total: 14.51 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 5.84 Total: 22.16 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -1.10 Total: -87.62 kcal Atomic # 8 Polarization: -63.96 SS G_CDS: -0.49 Total: -64.45 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -80.91 7.39 -73.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126556794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.663 kcal (2) G-P(sol) polarization free energy of solvation -80.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds