Wall clock time and date at job start Tue Mar 31 2020 10:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 N 1.46501 * 109.46879 * 240.00352 * 2 1 3 5 5 C 1.39794 * 120.00252 * 85.00071 * 4 2 1 6 6 C 1.38867 * 120.03050 * 359.72284 * 5 4 2 7 7 C 1.38350 * 119.97172 * 179.79056 * 6 5 4 8 8 F 1.35093 * 119.98561 * 180.20902 * 7 6 5 9 9 C 1.38611 * 120.02951 * 0.46398 * 7 6 5 10 10 F 1.35096 * 119.97106 * 179.76373 * 9 7 6 11 11 C 1.38617 * 120.05979 * 359.78982 * 9 7 6 12 12 F 1.35097 * 119.98782 * 179.97438 * 11 9 7 13 13 C 1.38354 * 120.02692 * 359.97438 * 11 9 7 14 14 C 1.50700 * 109.47061 * 120.00380 * 2 1 3 15 15 O 1.21287 * 119.99958 * 106.21670 * 14 2 1 16 16 N 1.34771 * 119.99851 * 286.21007 * 14 2 1 17 17 C 1.46504 * 120.00213 * 4.74786 * 16 14 2 18 18 C 1.46505 * 120.00107 * 185.01327 * 16 14 2 19 19 C 1.50695 * 109.47465 * 269.72960 * 18 16 14 20 20 H 1.08009 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00010 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00293 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46856 * 59.99795 * 23 21 19 25 25 H 1.48493 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46798 * 299.99781 * 23 21 19 27 27 H 1.09000 * 109.47584 * 50.37189 * 1 2 3 28 28 H 1.09004 * 109.47464 * 170.37573 * 1 2 3 29 29 H 1.09003 * 109.47023 * 290.37507 * 1 2 3 30 30 H 0.96999 * 119.99835 * 264.99893 * 4 2 1 31 31 H 1.08003 * 120.00921 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.01005 * 179.97438 * 13 11 9 33 33 H 1.09004 * 109.46502 * 267.86644 * 17 16 14 34 34 H 1.08998 * 109.47030 * 27.86726 * 17 16 14 35 35 H 1.08998 * 109.47102 * 147.87074 * 17 16 14 36 36 H 1.09006 * 109.46596 * 29.73119 * 18 16 14 37 37 H 1.09001 * 109.46882 * 149.72472 * 18 16 14 38 38 H 0.96998 * 120.00444 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1517 0.0069 -2.4004 6 6 1.8162 1.3528 -2.4649 7 6 1.9530 2.0429 -3.6561 8 9 1.6307 3.3534 -3.7181 9 6 2.4155 1.3891 -4.7875 10 9 2.5440 2.0629 -5.9513 11 6 2.7457 0.0442 -4.7259 12 9 3.1959 -0.5918 -5.8295 13 6 2.6146 -0.6470 -3.5346 14 6 2.0323 -0.7105 1.2304 15 8 2.5110 -1.8209 1.1365 16 7 1.9497 -0.1119 2.4351 17 6 1.2783 1.1838 2.5648 18 6 2.5363 -0.7541 3.6140 19 6 1.5064 -1.6373 4.2697 20 1 0.5140 -1.7131 3.8501 21 6 1.8311 -2.3495 5.4048 22 7 3.0398 -2.2585 5.9149 23 14 0.5545 -3.4449 6.2173 24 1 0.1110 -4.4856 5.2553 25 1 1.1492 -4.0957 7.4122 26 1 -0.6116 -2.6235 6.6305 27 1 -0.3634 0.6554 -0.7915 28 1 -0.3634 -1.0132 -0.1718 29 1 -0.3633 0.3578 0.9634 30 1 2.2489 -1.6317 -1.1527 31 1 1.4524 1.8616 -1.5844 32 1 2.8715 -1.6949 -3.4870 33 1 2.0102 1.9844 2.4574 34 1 0.5191 1.2789 1.7885 35 1 0.8064 1.2520 3.5450 36 1 3.3922 -1.3573 3.3109 37 1 2.8620 0.0101 4.3197 38 1 3.2682 -2.7592 6.7137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153553294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:03 Heat of formation + Delta-G solvation = -130.712486 kcal Electronic energy + Delta-G solvation = -25973.233538 eV Core-core repulsion = 21594.841432 eV Total energy + Delta-G solvation = -4378.392106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.81703 -49.36337 -48.49002 -40.17817 -38.94910 -35.70021 -35.08036 -32.83152 -31.58691 -30.63402 -28.52132 -27.74002 -26.26752 -24.37404 -23.71861 -22.96579 -21.72706 -19.31609 -18.70782 -17.98681 -17.65957 -16.92320 -16.85699 -16.64064 -16.37815 -15.64780 -15.63587 -15.30024 -15.20025 -14.98065 -14.85191 -14.76419 -14.40439 -14.10086 -13.98514 -13.17075 -12.97860 -12.86316 -12.66672 -12.49852 -12.17034 -12.10190 -11.84873 -11.65499 -11.46861 -11.27478 -10.96775 -10.67414 -10.26456 -10.17006 -9.77219 -9.23289 -9.17253 -8.53299 -7.89039 -7.82980 -6.14441 -4.19945 0.55502 0.73723 2.73879 2.98496 3.08267 3.25066 3.30248 3.32425 3.36636 3.75822 3.96939 4.09271 4.30004 4.35079 4.59805 4.64258 4.85023 4.88775 5.00568 5.20255 5.29684 5.32837 5.42626 5.51576 5.57888 5.58750 5.69133 5.75344 5.98020 6.16085 6.31952 6.72375 6.91802 7.25243 7.33269 7.39390 7.80228 8.09890 8.16211 8.68178 8.86015 9.45409 10.93735 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.002736 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.070597 B =10232.248758 C =10731.217282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 H 0.102 0.898 4 N -0.707 5.707 5 C 0.279 3.721 6 C -0.227 4.227 7 C 0.153 3.847 8 F -0.120 7.120 9 C -0.042 4.042 10 F -0.128 7.128 11 C 0.152 3.848 12 F -0.120 7.120 13 C -0.218 4.218 14 C 0.502 3.498 15 O -0.534 6.534 16 N -0.593 5.593 17 C 0.066 3.934 18 C 0.246 3.754 19 C -0.529 4.529 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.419 0.581 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 9.114 -17.001 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.119 0.881 4 N -0.334 5.334 5 C 0.169 3.831 6 C -0.251 4.251 7 C 0.131 3.869 8 F -0.098 7.098 9 C -0.065 4.065 10 F -0.107 7.107 11 C 0.131 3.869 12 F -0.099 7.099 13 C -0.242 4.242 14 C 0.286 3.714 15 O -0.412 6.412 16 N -0.325 5.325 17 C -0.078 4.078 18 C 0.127 3.873 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.530 8.586 -16.723 19.127 hybrid contribution -0.533 -0.639 0.208 0.858 sum -4.063 7.946 -16.515 18.772 Atomic orbital electron populations 1.22397 0.93129 1.03954 1.03529 1.20974 0.95618 0.97315 0.84743 0.88066 1.44706 1.69804 1.13540 1.05383 1.17103 0.90005 0.89999 0.85950 1.20534 1.12660 0.93912 0.97993 1.16912 0.98627 0.78648 0.92667 1.91550 1.89881 1.31556 1.96856 1.17184 1.15629 0.90335 0.83320 1.91504 1.94681 1.79527 1.44947 1.16891 0.98022 0.88236 0.83785 1.91551 1.86154 1.81373 1.50785 1.20430 1.11366 1.02223 0.90213 1.20107 0.80326 0.86539 0.84400 1.90686 1.45987 1.18903 1.85583 1.48108 1.55157 1.20413 1.08817 1.22003 0.96973 0.85141 1.03683 1.19348 0.94503 0.93008 0.80402 1.21344 0.98253 1.26967 1.10243 0.92437 1.24938 0.95566 0.96614 0.96920 1.69911 1.18922 1.42084 1.22351 0.86543 0.81303 0.80765 0.78729 1.20152 1.21122 1.20197 0.91288 0.91082 0.89759 0.74185 0.83029 0.83006 0.93325 0.91310 0.90297 0.93880 0.94692 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.99 37.15 0.33 -1.44 16 2 C 0.12 1.49 1.86 -69.08 -0.13 1.36 16 3 H 0.10 1.02 6.07 -51.93 -0.32 0.71 16 4 N -0.71 -8.13 5.20 -53.28 -0.28 -8.41 16 5 C 0.28 2.84 6.64 -83.76 -0.56 2.29 16 6 C -0.23 -2.19 8.90 -39.31 -0.35 -2.54 16 7 C 0.15 1.63 7.30 -39.40 -0.29 1.34 16 8 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 9 C -0.04 -0.48 7.31 -39.30 -0.29 -0.77 16 10 F -0.13 -1.63 17.09 2.25 0.04 -1.59 16 11 C 0.15 1.65 7.30 -39.40 -0.29 1.36 16 12 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16 13 C -0.22 -2.14 9.87 -39.31 -0.39 -2.53 16 14 C 0.50 9.04 6.98 -10.99 -0.08 8.96 16 15 O -0.53 -11.92 15.48 5.55 0.09 -11.84 16 16 N -0.59 -11.19 2.86 -182.95 -0.52 -11.71 16 17 C 0.07 0.88 9.85 59.85 0.59 1.47 16 18 C 0.25 6.02 5.14 -5.19 -0.03 6.00 16 19 C -0.53 -14.23 9.39 -34.44 -0.32 -14.56 16 20 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 23 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.86 5.50 -51.93 -0.29 0.57 16 30 H 0.42 5.18 7.73 -40.82 -0.32 4.86 16 31 H 0.15 1.22 5.96 -52.48 -0.31 0.91 16 32 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.70 4.19 -51.93 -0.22 0.49 16 35 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 36 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 37 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -31.04 335.31 -5.60 -36.64 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.88 Total: 0.84 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.89 Total: 2.56 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.06 Total: -45.07 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.12 Total: -4.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.04 -5.60 -36.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153553294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.077 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds