Wall clock time and date at job start Tue Mar 31 2020 10:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 N 1.46501 * 109.46879 * 240.00352 * 2 1 3 5 5 C 1.39794 * 120.00252 * 85.00071 * 4 2 1 6 6 C 1.38867 * 120.03050 * 359.72284 * 5 4 2 7 7 C 1.38350 * 119.97172 * 179.79056 * 6 5 4 8 8 F 1.35093 * 119.98561 * 180.20902 * 7 6 5 9 9 C 1.38611 * 120.02951 * 0.46398 * 7 6 5 10 10 F 1.35096 * 119.97106 * 179.76373 * 9 7 6 11 11 C 1.38617 * 120.05979 * 359.78982 * 9 7 6 12 12 F 1.35097 * 119.98782 * 179.97438 * 11 9 7 13 13 C 1.38354 * 120.02692 * 359.97438 * 11 9 7 14 14 C 1.50700 * 109.47061 * 120.00380 * 2 1 3 15 15 O 1.21287 * 119.99958 * 106.21670 * 14 2 1 16 16 N 1.34771 * 119.99851 * 286.21007 * 14 2 1 17 17 C 1.46504 * 120.00213 * 4.74786 * 16 14 2 18 18 C 1.46505 * 120.00107 * 185.01327 * 16 14 2 19 19 C 1.50695 * 109.47465 * 269.72960 * 18 16 14 20 20 H 1.08009 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00010 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00293 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46856 * 59.99795 * 23 21 19 25 25 H 1.48493 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46798 * 299.99781 * 23 21 19 27 27 H 1.09000 * 109.47584 * 50.37189 * 1 2 3 28 28 H 1.09004 * 109.47464 * 170.37573 * 1 2 3 29 29 H 1.09003 * 109.47023 * 290.37507 * 1 2 3 30 30 H 0.96999 * 119.99835 * 264.99893 * 4 2 1 31 31 H 1.08003 * 120.00921 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.01005 * 179.97438 * 13 11 9 33 33 H 1.09004 * 109.46502 * 267.86644 * 17 16 14 34 34 H 1.08998 * 109.47030 * 27.86726 * 17 16 14 35 35 H 1.08998 * 109.47102 * 147.87074 * 17 16 14 36 36 H 1.09006 * 109.46596 * 29.73119 * 18 16 14 37 37 H 1.09001 * 109.46882 * 149.72472 * 18 16 14 38 38 H 0.96998 * 120.00444 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1517 0.0069 -2.4004 6 6 1.8162 1.3528 -2.4649 7 6 1.9530 2.0429 -3.6561 8 9 1.6307 3.3534 -3.7181 9 6 2.4155 1.3891 -4.7875 10 9 2.5440 2.0629 -5.9513 11 6 2.7457 0.0442 -4.7259 12 9 3.1959 -0.5918 -5.8295 13 6 2.6146 -0.6470 -3.5346 14 6 2.0323 -0.7105 1.2304 15 8 2.5110 -1.8209 1.1365 16 7 1.9497 -0.1119 2.4351 17 6 1.2783 1.1838 2.5648 18 6 2.5363 -0.7541 3.6140 19 6 1.5064 -1.6373 4.2697 20 1 0.5140 -1.7131 3.8501 21 6 1.8311 -2.3495 5.4048 22 7 3.0398 -2.2585 5.9149 23 14 0.5545 -3.4449 6.2173 24 1 0.1110 -4.4856 5.2553 25 1 1.1492 -4.0957 7.4122 26 1 -0.6116 -2.6235 6.6305 27 1 -0.3634 0.6554 -0.7915 28 1 -0.3634 -1.0132 -0.1718 29 1 -0.3633 0.3578 0.9634 30 1 2.2489 -1.6317 -1.1527 31 1 1.4524 1.8616 -1.5844 32 1 2.8715 -1.6949 -3.4870 33 1 2.0102 1.9844 2.4574 34 1 0.5191 1.2789 1.7885 35 1 0.8064 1.2520 3.5450 36 1 3.3922 -1.3573 3.3109 37 1 2.8620 0.0101 4.3197 38 1 3.2682 -2.7592 6.7137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153553294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:02 Heat of formation + Delta-G solvation = -150.086335 kcal Electronic energy + Delta-G solvation = -25974.073651 eV Core-core repulsion = 21594.841432 eV Total energy + Delta-G solvation = -4379.232219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.69483 -50.21026 -49.38664 -41.31894 -40.04207 -36.85474 -36.50216 -34.75885 -32.61703 -31.47904 -29.79196 -29.07891 -27.54104 -25.77454 -24.68405 -24.17279 -22.83463 -20.47360 -19.70265 -18.93489 -18.67180 -18.54599 -18.02156 -17.72535 -17.53789 -16.79339 -16.48741 -16.45809 -16.36048 -16.18162 -15.97730 -15.88602 -15.45310 -15.30105 -14.95112 -14.50944 -14.18950 -13.89441 -13.69166 -13.64699 -13.50572 -13.26094 -13.20403 -12.94541 -12.70295 -12.63709 -12.49928 -12.28360 -12.13429 -11.70223 -11.06257 -10.63995 -10.61274 -10.02212 -9.45907 -8.71401 -8.22390 -6.36791 -0.23711 -0.10924 1.38082 1.41444 1.48621 1.67051 1.80267 2.19062 2.33181 2.43342 2.62435 3.07954 3.14553 3.23533 3.47787 3.49977 3.83612 3.97299 4.01270 4.07943 4.33196 4.52803 4.58015 4.72081 4.72771 4.76237 4.79742 4.90700 4.99385 5.00978 5.21656 5.31186 5.47224 5.54422 5.79135 5.95072 6.05066 6.43208 6.67670 6.75422 7.24789 7.39304 8.84412 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.002736 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.070597 B =10232.248758 C =10731.217282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.133 0.867 4 N -0.712 5.712 5 C 0.278 3.722 6 C -0.213 4.213 7 C 0.151 3.849 8 F -0.122 7.122 9 C -0.054 4.054 10 F -0.139 7.139 11 C 0.145 3.855 12 F -0.127 7.127 13 C -0.210 4.210 14 C 0.492 3.508 15 O -0.588 6.588 16 N -0.602 5.602 17 C 0.059 3.941 18 C 0.260 3.740 19 C -0.541 4.541 20 H 0.056 0.944 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.260 1.260 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.414 0.586 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.068 0.932 36 H -0.002 1.002 37 H 0.026 0.974 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 10.327 -17.476 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 H 0.150 0.850 4 N -0.339 5.339 5 C 0.169 3.831 6 C -0.236 4.236 7 C 0.130 3.870 8 F -0.101 7.101 9 C -0.077 4.077 10 F -0.118 7.118 11 C 0.124 3.876 12 F -0.105 7.105 13 C -0.233 4.233 14 C 0.280 3.720 15 O -0.469 6.469 16 N -0.332 5.332 17 C -0.083 4.083 18 C 0.138 3.862 19 C -0.579 4.579 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.569 5.569 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.184 1.184 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.252 0.748 31 H 0.193 0.807 32 H 0.182 0.818 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.016 0.984 37 H 0.044 0.956 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.422 9.859 -17.226 20.575 hybrid contribution 0.091 -0.997 0.314 1.050 sum -5.331 8.862 -16.912 19.824 Atomic orbital electron populations 1.22416 0.91177 1.04068 1.04959 1.20939 0.96776 0.97540 0.81811 0.84992 1.44676 1.70360 1.13359 1.05537 1.17091 0.90303 0.90230 0.85431 1.20692 1.11337 0.93392 0.98225 1.16915 0.98835 0.78585 0.92685 1.91547 1.89934 1.31728 1.96872 1.17429 1.16279 0.90677 0.83348 1.91472 1.94833 1.79788 1.45678 1.16937 0.98572 0.88148 0.83946 1.91535 1.86331 1.81462 1.51171 1.20547 1.10294 1.02805 0.89701 1.21177 0.79081 0.86110 0.85666 1.90655 1.48171 1.21538 1.86539 1.48079 1.55360 1.22091 1.07686 1.22333 0.98298 0.82967 1.04684 1.18776 0.92965 0.92244 0.82189 1.21670 0.98558 1.27303 1.10393 0.92552 1.25835 0.97534 0.98059 0.97709 1.70034 1.20815 1.43165 1.22886 0.85508 0.79165 0.78828 0.77573 1.20313 1.20702 1.18407 0.87944 0.92458 0.89375 0.74805 0.80708 0.81813 0.90717 0.87398 0.91298 0.98427 0.95621 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.99 71.98 0.65 -2.18 16 2 C 0.14 2.95 1.86 44.24 0.08 3.04 16 3 H 0.13 2.04 6.07 -2.39 -0.01 2.02 16 4 N -0.71 -14.83 5.20 -322.49 -1.68 -16.50 16 5 C 0.28 4.91 6.64 38.17 0.25 5.17 16 6 C -0.21 -3.34 8.90 22.45 0.20 -3.14 16 7 C 0.15 2.84 7.30 22.39 0.16 3.01 16 8 F -0.12 -2.43 17.18 44.97 0.77 -1.66 16 9 C -0.05 -1.17 7.31 22.45 0.16 -1.01 16 10 F -0.14 -3.43 17.09 44.97 0.77 -2.66 16 11 C 0.15 2.96 7.30 22.39 0.16 3.12 16 12 F -0.13 -2.81 17.18 44.97 0.77 -2.03 16 13 C -0.21 -3.73 9.87 22.45 0.22 -3.51 16 14 C 0.49 17.41 6.98 87.66 0.61 18.02 16 15 O -0.59 -26.92 15.48 -3.05 -0.05 -26.97 16 16 N -0.60 -22.36 2.86 -851.11 -2.43 -24.79 16 17 C 0.06 1.42 9.85 127.77 1.26 2.68 16 18 C 0.26 13.09 5.14 85.63 0.44 13.53 16 19 C -0.54 -29.52 9.39 25.60 0.24 -29.28 16 20 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 23 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 H 0.10 1.10 7.62 -2.39 -0.02 1.08 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.43 5.50 -2.39 -0.01 1.42 16 30 H 0.41 9.85 7.73 -92.71 -0.72 9.13 16 31 H 0.18 1.88 5.96 -2.91 -0.02 1.87 16 32 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.11 1.74 4.19 -2.39 -0.01 1.73 16 35 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 36 H 0.00 -0.14 7.49 -2.38 -0.02 -0.16 16 37 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 38 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -70.40 335.31 5.80 -64.60 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.42 Total: 8.72 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.91 Total: 10.34 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.82 Total: -95.60 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 2.31 Total: -6.35 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.40 5.80 -64.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153553294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.482 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds