Wall clock time and date at job start Tue Mar 31 2020 10:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3 5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1 6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1 7 7 N 1.31509 * 119.99777 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47335 * 300.00814 * 8 6 4 11 11 H 1.48501 * 109.46885 * 60.00435 * 8 6 4 12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1 14 14 O 1.21591 * 119.99580 * 0.02562 * 13 12 2 15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.39947 * 119.99714 * 175.38250 * 15 13 12 17 17 C 1.38876 * 120.06683 * 214.80980 * 16 15 13 18 18 C 1.38108 * 119.92754 * 179.76996 * 17 16 15 19 19 C 1.38281 * 120.07179 * 0.50055 * 18 17 16 20 20 C 1.50704 * 119.93135 * 179.72447 * 19 18 17 21 21 C 1.52996 * 109.46975 * 270.02987 * 20 19 18 22 22 F 1.39898 * 109.47589 * 60.00042 * 21 20 19 23 23 F 1.39904 * 109.46985 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.47258 * 299.99621 * 21 20 19 25 25 C 1.38282 * 120.13776 * 359.75204 * 19 18 17 26 26 C 1.38110 * 120.07079 * 359.97438 * 25 19 18 27 27 H 1.09008 * 109.47079 * 60.00032 * 1 2 3 28 28 H 1.09000 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47414 * 300.00406 * 1 2 3 30 30 H 0.97000 * 119.99971 * 179.97438 * 7 6 4 31 31 H 0.96998 * 119.99499 * 265.00519 * 12 2 1 32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12 33 33 H 1.08001 * 120.03183 * 359.97438 * 17 16 15 34 34 H 1.08006 * 119.96469 * 180.25454 * 18 17 16 35 35 H 1.09000 * 109.46529 * 30.02559 * 20 19 18 36 36 H 1.09000 * 109.46892 * 150.02672 * 20 19 18 37 37 H 1.08001 * 119.96440 * 180.02562 * 25 19 18 38 38 H 1.08001 * 120.03276 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.8259 -0.4204 5.2205 10 1 1.8259 -2.5201 4.0078 11 1 3.8063 -1.1207 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1616 -2.4116 15 7 2.5959 -0.6537 -3.4576 16 6 2.6382 0.0175 -4.6848 17 6 2.3836 -0.6710 -5.8637 18 6 2.4215 -0.0047 -7.0728 19 6 2.7227 1.3444 -7.1114 20 6 2.7693 2.0670 -8.4330 21 6 4.1867 1.9943 -9.0043 22 9 4.5459 0.6553 -9.1920 23 9 4.2301 2.6656 -10.2310 24 9 5.0806 2.5962 -8.1121 25 6 2.9819 2.0317 -5.9397 26 6 2.9400 1.3723 -4.7269 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7081 1.1609 3.4844 31 1 2.2490 -1.6317 -1.1525 32 1 2.8897 -1.5763 -3.3990 33 1 2.1530 -1.7257 -5.8346 34 1 2.2195 -0.5387 -7.9896 35 1 2.0729 1.5980 -9.1282 36 1 2.4895 3.1103 -8.2867 37 1 3.2164 3.0854 -5.9731 38 1 3.1429 1.9096 -3.8123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160975776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:27 Heat of formation + Delta-G solvation = -164.031076 kcal Electronic energy + Delta-G solvation = -25600.804590 eV Core-core repulsion = 21220.967682 eV Total energy + Delta-G solvation = -4379.836909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.25900 -47.78721 -47.71329 -40.31178 -38.68371 -35.50208 -34.49752 -32.80549 -32.06784 -30.94061 -29.10014 -27.48815 -25.29076 -23.96432 -22.98929 -22.06222 -20.89353 -19.89424 -18.69611 -18.66908 -18.24600 -17.69260 -17.48194 -16.04073 -15.56440 -15.37223 -15.04268 -14.67855 -14.60203 -14.40739 -14.22032 -14.16576 -13.92224 -13.90860 -13.75653 -13.46981 -13.23955 -13.02412 -12.67925 -12.43864 -12.23059 -11.79124 -11.70874 -11.20221 -11.13755 -11.01417 -10.79600 -10.38431 -10.26847 -10.07161 -9.46527 -9.10042 -8.89625 -8.60718 -8.18517 -7.80443 -6.16321 -4.25881 1.15612 1.42804 2.63635 3.09918 3.23100 3.28767 3.30573 3.47592 3.74652 3.80010 3.83673 4.02550 4.28944 4.60214 4.67227 4.85584 4.96787 5.02340 5.12940 5.16359 5.38179 5.59809 5.69493 6.00340 6.21290 6.39985 6.48753 6.63958 6.75879 6.93337 7.06929 7.12984 7.18618 7.39850 7.57674 7.77924 7.94112 8.10872 8.66866 8.78820 9.16223 9.42248 10.89697 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.037066 B = 0.002293 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.237117 B =12205.602626 C =12272.433544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.718 5.718 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.697 5.697 16 C 0.194 3.806 17 C -0.158 4.158 18 C -0.078 4.078 19 C -0.142 4.142 20 C -0.115 4.115 21 C 0.453 3.547 22 F -0.182 7.182 23 F -0.189 7.189 24 F -0.180 7.180 25 C -0.077 4.077 26 C -0.122 4.122 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.404 0.596 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -1.453 -22.208 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.393 3.607 14 O -0.458 6.458 15 N -0.345 5.345 16 C 0.097 3.903 17 C -0.179 4.179 18 C -0.096 4.096 19 C -0.143 4.143 20 C -0.153 4.153 21 C 0.399 3.601 22 F -0.164 7.164 23 F -0.170 7.170 24 F -0.162 7.162 25 C -0.095 4.095 26 C -0.143 4.143 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.239 0.761 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.514 -0.257 -21.943 22.224 hybrid contribution 0.717 -1.442 0.821 1.808 sum 4.231 -1.699 -21.122 21.608 Atomic orbital electron populations 1.22110 0.98494 0.99123 1.00974 1.18692 0.90881 0.93750 0.78783 0.93231 1.21162 1.32681 1.13343 0.90241 0.92113 1.24881 0.94780 0.94958 0.99048 1.69888 1.35641 1.22374 1.24094 0.86482 0.79160 0.79558 0.81733 1.21088 1.20160 1.20162 1.45890 1.68390 1.13356 1.09212 1.16169 0.78654 0.85514 0.80403 1.90874 1.56996 1.14031 1.83919 1.42909 1.68372 1.16425 1.06761 1.17671 0.95734 0.92419 0.84441 1.20837 1.05152 1.00521 0.91390 1.20705 0.98393 0.93168 0.97382 1.19172 1.07715 0.94466 0.92968 1.21703 0.91160 1.05314 0.97109 1.20641 0.90264 0.73570 0.75664 1.93183 1.93384 1.34591 1.95215 1.93181 1.97107 1.80757 1.45984 1.93202 1.71374 1.83542 1.68070 1.20940 0.97567 0.99785 0.91248 1.21439 0.99860 0.93913 0.99077 0.96584 0.95502 0.89045 0.92434 0.78111 0.76140 0.85578 0.85719 0.86738 0.86626 0.85632 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.28 7.00 2.56 -69.09 -0.18 6.83 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.72 -14.49 5.07 -59.82 -0.30 -14.79 16 13 C 0.69 13.60 8.37 -86.92 -0.73 12.87 16 14 O -0.58 -13.56 13.44 5.29 0.07 -13.49 16 15 N -0.70 -10.30 5.34 -14.22 -0.08 -10.38 16 16 C 0.19 2.79 6.30 -83.69 -0.53 2.26 16 17 C -0.16 -1.80 9.97 -39.39 -0.39 -2.20 16 18 C -0.08 -0.79 9.41 -39.61 -0.37 -1.17 16 19 C -0.14 -1.48 4.74 -104.59 -0.50 -1.97 16 20 C -0.11 -0.85 5.39 -27.88 -0.15 -1.00 16 21 C 0.45 4.13 3.15 37.16 0.12 4.25 16 22 F -0.18 -1.85 16.78 2.25 0.04 -1.81 16 23 F -0.19 -1.73 17.32 2.25 0.04 -1.69 16 24 F -0.18 -1.96 16.78 2.25 0.04 -1.92 16 25 C -0.08 -0.94 9.41 -39.61 -0.37 -1.32 16 26 C -0.12 -1.86 8.69 -39.40 -0.34 -2.20 16 27 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16 32 H 0.40 4.53 8.84 -40.82 -0.36 4.17 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.12 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -30.93 338.14 -7.22 -38.15 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.24 Total: 8.92 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.49 Total: 0.52 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.25 Total: -49.07 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.49 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.93 -7.22 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160975776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.880 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds