Wall clock time and date at job start Tue Mar 31 2020 10:52:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09005 * 109.46995 * 2 1
4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3
5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1
6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1
7 7 N 1.31509 * 119.99777 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00208 * 179.97438 * 6 4 2
9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4
10 10 H 1.48498 * 109.47335 * 300.00814 * 8 6 4
11 11 H 1.48501 * 109.46885 * 60.00435 * 8 6 4
12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3
13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1
14 14 O 1.21591 * 119.99580 * 0.02562 * 13 12 2
15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2
16 16 C 1.39947 * 119.99714 * 175.38250 * 15 13 12
17 17 C 1.38876 * 120.06683 * 214.80980 * 16 15 13
18 18 C 1.38108 * 119.92754 * 179.76996 * 17 16 15
19 19 C 1.38281 * 120.07179 * 0.50055 * 18 17 16
20 20 C 1.50704 * 119.93135 * 179.72447 * 19 18 17
21 21 C 1.52996 * 109.46975 * 270.02987 * 20 19 18
22 22 F 1.39898 * 109.47589 * 60.00042 * 21 20 19
23 23 F 1.39904 * 109.46985 * 180.02562 * 21 20 19
24 24 F 1.39904 * 109.47258 * 299.99621 * 21 20 19
25 25 C 1.38282 * 120.13776 * 359.75204 * 19 18 17
26 26 C 1.38110 * 120.07079 * 359.97438 * 25 19 18
27 27 H 1.09008 * 109.47079 * 60.00032 * 1 2 3
28 28 H 1.09000 * 109.47383 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.47414 * 300.00406 * 1 2 3
30 30 H 0.97000 * 119.99971 * 179.97438 * 7 6 4
31 31 H 0.96998 * 119.99499 * 265.00519 * 12 2 1
32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12
33 33 H 1.08001 * 120.03183 * 359.97438 * 17 16 15
34 34 H 1.08006 * 119.96469 * 180.25454 * 18 17 16
35 35 H 1.09000 * 109.46529 * 30.02559 * 20 19 18
36 36 H 1.09000 * 109.46892 * 150.02672 * 20 19 18
37 37 H 1.08001 * 119.96440 * 180.02562 * 25 19 18
38 38 H 1.08001 * 120.03276 * 179.97438 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2304
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2392 2.4828
7 7 0.9427 0.8297 2.6034
8 14 2.3213 -1.1202 4.0080
9 1 1.8259 -0.4204 5.2205
10 1 1.8259 -2.5201 4.0078
11 1 3.8063 -1.1207 4.0082
12 7 2.0183 -0.6906 -1.1962
13 6 2.1471 -0.0183 -2.3571
14 8 1.8583 1.1616 -2.4116
15 7 2.5959 -0.6537 -3.4576
16 6 2.6382 0.0175 -4.6848
17 6 2.3836 -0.6710 -5.8637
18 6 2.4215 -0.0047 -7.0728
19 6 2.7227 1.3444 -7.1114
20 6 2.7693 2.0670 -8.4330
21 6 4.1867 1.9943 -9.0043
22 9 4.5459 0.6553 -9.1920
23 9 4.2301 2.6656 -10.2310
24 9 5.0806 2.5962 -8.1121
25 6 2.9819 2.0317 -5.9397
26 6 2.9400 1.3723 -4.7269
27 1 -0.3634 0.5139 -0.8901
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 0.7081 1.1609 3.4844
31 1 2.2490 -1.6317 -1.1525
32 1 2.8897 -1.5763 -3.3990
33 1 2.1530 -1.7257 -5.8346
34 1 2.2195 -0.5387 -7.9896
35 1 2.0729 1.5980 -9.1282
36 1 2.4895 3.1103 -8.2867
37 1 3.2164 3.0854 -5.9731
38 1 3.1429 1.9096 -3.8123
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000160975776.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:27
Heat of formation + Delta-G solvation = -164.031076 kcal
Electronic energy + Delta-G solvation = -25600.804590 eV
Core-core repulsion = 21220.967682 eV
Total energy + Delta-G solvation = -4379.836909 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.114 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-50.25900 -47.78721 -47.71329 -40.31178 -38.68371 -35.50208 -34.49752 -32.80549
-32.06784 -30.94061 -29.10014 -27.48815 -25.29076 -23.96432 -22.98929 -22.06222
-20.89353 -19.89424 -18.69611 -18.66908 -18.24600 -17.69260 -17.48194 -16.04073
-15.56440 -15.37223 -15.04268 -14.67855 -14.60203 -14.40739 -14.22032 -14.16576
-13.92224 -13.90860 -13.75653 -13.46981 -13.23955 -13.02412 -12.67925 -12.43864
-12.23059 -11.79124 -11.70874 -11.20221 -11.13755 -11.01417 -10.79600 -10.38431
-10.26847 -10.07161 -9.46527 -9.10042 -8.89625 -8.60718 -8.18517 -7.80443
-6.16321 -4.25881 1.15612 1.42804 2.63635 3.09918 3.23100 3.28767
3.30573 3.47592 3.74652 3.80010 3.83673 4.02550 4.28944 4.60214
4.67227 4.85584 4.96787 5.02340 5.12940 5.16359 5.38179 5.59809
5.69493 6.00340 6.21290 6.39985 6.48753 6.63958 6.75879 6.93337
7.06929 7.12984 7.18618 7.39850 7.57674 7.77924 7.94112 8.10872
8.66866 8.78820 9.16223 9.42248 10.89697
Molecular weight = 316.11amu
Principal moments of inertia in cm(-1)
A = 0.037066 B = 0.002293 C = 0.002281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.237117 B =12205.602626 C =12272.433544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.281 3.719
3 H 0.050 0.950
4 C -0.536 4.536
5 H 0.061 0.939
6 C 0.067 3.933
7 N -0.883 5.883
8 Si 0.903 3.097
9 H -0.285 1.285
10 H -0.276 1.276
11 H -0.276 1.276
12 N -0.718 5.718
13 C 0.692 3.308
14 O -0.581 6.581
15 N -0.697 5.697
16 C 0.194 3.806
17 C -0.158 4.158
18 C -0.078 4.078
19 C -0.142 4.142
20 C -0.115 4.115
21 C 0.453 3.547
22 F -0.182 7.182
23 F -0.189 7.189
24 F -0.180 7.180
25 C -0.077 4.077
26 C -0.122 4.122
27 H 0.015 0.985
28 H 0.026 0.974
29 H 0.091 0.909
30 H 0.266 0.734
31 H 0.387 0.613
32 H 0.404 0.596
33 H 0.126 0.874
34 H 0.125 0.875
35 H 0.114 0.886
36 H 0.115 0.885
37 H 0.126 0.874
38 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.883 -1.453 -22.208 22.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.179 3.821
3 H 0.068 0.932
4 C -0.574 4.574
5 H 0.079 0.921
6 C -0.137 4.137
7 N -0.520 5.520
8 Si 0.731 3.269
9 H -0.211 1.211
10 H -0.202 1.202
11 H -0.202 1.202
12 N -0.368 5.368
13 C 0.393 3.607
14 O -0.458 6.458
15 N -0.345 5.345
16 C 0.097 3.903
17 C -0.179 4.179
18 C -0.096 4.096
19 C -0.143 4.143
20 C -0.153 4.153
21 C 0.399 3.601
22 F -0.164 7.164
23 F -0.170 7.170
24 F -0.162 7.162
25 C -0.095 4.095
26 C -0.143 4.143
27 H 0.034 0.966
28 H 0.045 0.955
29 H 0.110 0.890
30 H 0.076 0.924
31 H 0.219 0.781
32 H 0.239 0.761
33 H 0.144 0.856
34 H 0.143 0.857
35 H 0.133 0.867
36 H 0.134 0.866
37 H 0.144 0.856
38 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 3.514 -0.257 -21.943 22.224
hybrid contribution 0.717 -1.442 0.821 1.808
sum 4.231 -1.699 -21.122 21.608
Atomic orbital electron populations
1.22110 0.98494 0.99123 1.00974 1.18692 0.90881 0.93750 0.78783
0.93231 1.21162 1.32681 1.13343 0.90241 0.92113 1.24881 0.94780
0.94958 0.99048 1.69888 1.35641 1.22374 1.24094 0.86482 0.79160
0.79558 0.81733 1.21088 1.20160 1.20162 1.45890 1.68390 1.13356
1.09212 1.16169 0.78654 0.85514 0.80403 1.90874 1.56996 1.14031
1.83919 1.42909 1.68372 1.16425 1.06761 1.17671 0.95734 0.92419
0.84441 1.20837 1.05152 1.00521 0.91390 1.20705 0.98393 0.93168
0.97382 1.19172 1.07715 0.94466 0.92968 1.21703 0.91160 1.05314
0.97109 1.20641 0.90264 0.73570 0.75664 1.93183 1.93384 1.34591
1.95215 1.93181 1.97107 1.80757 1.45984 1.93202 1.71374 1.83542
1.68070 1.20940 0.97567 0.99785 0.91248 1.21439 0.99860 0.93913
0.99077 0.96584 0.95502 0.89045 0.92434 0.78111 0.76140 0.85578
0.85719 0.86738 0.86626 0.85632 0.83454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16
2 C 0.28 7.00 2.56 -69.09 -0.18 6.83 16
3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16
4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16
5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16
6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16
7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16
8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16
9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16
10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
12 N -0.72 -14.49 5.07 -59.82 -0.30 -14.79 16
13 C 0.69 13.60 8.37 -86.92 -0.73 12.87 16
14 O -0.58 -13.56 13.44 5.29 0.07 -13.49 16
15 N -0.70 -10.30 5.34 -14.22 -0.08 -10.38 16
16 C 0.19 2.79 6.30 -83.69 -0.53 2.26 16
17 C -0.16 -1.80 9.97 -39.39 -0.39 -2.20 16
18 C -0.08 -0.79 9.41 -39.61 -0.37 -1.17 16
19 C -0.14 -1.48 4.74 -104.59 -0.50 -1.97 16
20 C -0.11 -0.85 5.39 -27.88 -0.15 -1.00 16
21 C 0.45 4.13 3.15 37.16 0.12 4.25 16
22 F -0.18 -1.85 16.78 2.25 0.04 -1.81 16
23 F -0.19 -1.73 17.32 2.25 0.04 -1.69 16
24 F -0.18 -1.96 16.78 2.25 0.04 -1.92 16
25 C -0.08 -0.94 9.41 -39.61 -0.37 -1.32 16
26 C -0.12 -1.86 8.69 -39.40 -0.34 -2.20 16
27 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16
28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16
30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
31 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16
32 H 0.40 4.53 8.84 -40.82 -0.36 4.17 16
33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16
34 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16
35 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16
36 H 0.12 0.68 8.08 -51.93 -0.42 0.26 16
37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16
38 H 0.15 2.62 6.22 -52.49 -0.33 2.29 16
LS Contribution 338.14 15.07 5.10 5.10
Total: -1.00 -30.93 338.14 -7.22 -38.15
By element:
Atomic # 1 Polarization: 13.16 SS G_CDS: -4.24 Total: 8.92 kcal
Atomic # 6 Polarization: 4.01 SS G_CDS: -3.49 Total: 0.52 kcal
Atomic # 7 Polarization: -49.32 SS G_CDS: 0.25 Total: -49.07 kcal
Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.49 kcal
Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.42 kcal
Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -30.93 -7.22 -38.15 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000160975776.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -125.880 kcal
(2) G-P(sol) polarization free energy of solvation -30.927 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds