Wall clock time and date at job start Tue Mar 31 2020 11:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45196 * 109.47361 * 2 1 4 4 C 1.34843 * 117.00527 * 179.97438 * 3 2 1 5 5 O 1.21575 * 119.99678 * 0.02562 * 4 3 2 6 6 C 1.46897 * 120.00250 * 179.97438 * 4 3 2 7 7 C 1.35907 * 125.42672 * 179.97438 * 6 4 3 8 8 C 1.41668 * 107.64148 * 180.02562 * 7 6 4 9 9 C 1.39762 * 133.28664 * 180.02562 * 8 7 6 10 10 C 1.39029 * 119.44855 * 179.78427 * 9 8 7 11 11 C 1.47563 * 119.93549 * 180.22777 * 10 9 8 12 12 O 1.21609 * 119.99921 * 215.67297 * 11 10 9 13 13 N 1.34778 * 119.99508 * 35.67360 * 11 10 9 14 14 C 1.46493 * 120.00477 * 5.82831 * 13 11 10 15 15 C 1.36907 * 119.99117 * 185.82663 * 13 11 10 16 16 H 1.07997 * 120.00556 * 334.88184 * 15 13 11 17 17 C 1.39030 * 119.99729 * 154.88282 * 15 13 11 18 18 N 1.31384 * 119.99836 * 349.52186 * 17 15 13 19 19 Si 1.86794 * 120.00018 * 169.51420 * 17 15 13 20 20 H 1.48507 * 109.46737 * 60.00741 * 19 17 15 21 21 H 1.48506 * 109.47189 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47724 * 300.00352 * 19 17 15 23 23 C 1.40352 * 120.12882 * 0.48331 * 10 9 8 24 24 C 1.36234 * 120.64972 * 359.46587 * 23 10 9 25 25 C 1.39488 * 120.28170 * 0.29752 * 24 23 10 26 26 N 1.37208 * 132.90371 * 179.97438 * 25 24 23 27 27 H 0.97001 * 125.55537 * 0.03621 * 26 25 24 28 28 H 1.09008 * 109.46775 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47141 * 299.99406 * 1 2 3 30 30 H 1.08996 * 109.47218 * 60.00365 * 1 2 3 31 31 H 1.09006 * 109.47137 * 240.00062 * 2 1 3 32 32 H 1.09000 * 109.47329 * 120.00377 * 2 1 3 33 33 H 1.08007 * 126.17665 * 0.02562 * 7 6 4 34 34 H 1.08003 * 120.27199 * 359.97438 * 9 8 7 35 35 H 1.08993 * 109.47376 * 24.91331 * 14 13 11 36 36 H 1.09003 * 109.47089 * 144.91841 * 14 13 11 37 37 H 1.09001 * 109.47322 * 264.91157 * 14 13 11 38 38 H 0.96996 * 119.99778 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.67578 * 179.73909 * 23 10 9 40 40 H 1.07993 * 119.86278 * 180.27213 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3508 1.5456 0.0005 5 8 4.0914 0.5815 0.0005 6 6 3.9122 2.9031 0.0000 7 6 5.2367 3.2078 0.0010 8 6 5.3524 4.6197 0.0006 9 6 6.4447 5.4917 0.0007 10 6 6.2235 6.8643 -0.0043 11 6 7.3689 7.7947 -0.0093 12 8 7.3022 8.8445 0.6009 13 7 8.4889 7.4809 -0.6902 14 6 8.5245 6.2798 -1.5282 15 6 9.5934 8.2847 -0.5986 16 1 9.4820 9.3287 -0.3456 17 6 10.8584 7.7570 -0.8313 18 7 11.0190 6.4572 -0.9350 19 14 12.3296 8.8961 -0.9968 20 1 12.4923 9.6793 0.2544 21 1 13.5539 8.0914 -1.2391 22 1 12.1124 9.8230 -2.1364 23 6 4.9131 7.3667 0.0008 24 6 3.8450 6.5210 -0.0003 25 6 4.0413 5.1401 -0.0002 26 7 3.1777 4.0738 -0.0006 27 1 2.2095 4.1322 -0.0016 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.0535 2.5011 0.0018 34 1 7.4521 5.1024 0.0016 35 1 7.5117 6.0227 -1.8380 36 1 9.1369 6.4698 -2.4097 37 1 8.9517 5.4532 -0.9605 38 1 11.9015 6.0891 -1.0978 39 1 4.7497 8.4343 0.0011 40 1 2.8421 6.9215 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:59 Heat of formation + Delta-G solvation = -66.989530 kcal Electronic energy + Delta-G solvation = -25246.493005 eV Core-core repulsion = 21412.720874 eV Total energy + Delta-G solvation = -3833.772131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.76688 -41.30399 -40.45561 -37.86155 -37.45891 -36.68639 -33.88317 -33.19950 -32.72811 -30.92975 -30.27703 -28.12642 -26.86805 -25.96157 -23.94407 -23.65295 -22.70020 -21.63040 -20.75907 -19.50316 -18.96749 -18.74293 -17.93304 -17.74296 -17.65249 -16.86308 -16.20500 -15.95747 -15.70343 -15.55541 -15.16252 -14.94349 -14.87650 -14.67432 -14.47832 -14.10682 -13.79170 -13.63651 -13.46882 -13.20137 -13.05389 -13.01310 -12.73254 -12.60744 -12.56015 -12.22216 -12.12360 -11.98228 -11.90189 -11.58952 -11.05763 -10.97857 -10.47822 -9.70206 -9.37127 -8.86927 -8.33865 -6.00580 -0.48209 0.18616 0.82682 1.32499 1.42088 1.42480 1.53132 1.88953 1.93242 2.07688 2.28391 2.81759 3.06838 3.15083 3.54958 3.61977 3.93909 3.99873 4.00915 4.04990 4.14536 4.28453 4.34441 4.40154 4.53083 4.61905 4.78460 4.80614 4.92682 4.98645 5.01705 5.07085 5.23011 5.31364 5.34355 5.35419 5.44104 5.45677 5.54682 5.91229 6.10755 6.38675 6.48056 6.51472 7.13873 7.41957 7.99949 8.67519 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.002719 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.890842 B =10295.572358 C =11231.525899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.543 3.457 5 O -0.517 6.517 6 C 0.022 3.978 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.031 4.031 10 C -0.151 4.151 11 C 0.476 3.524 12 O -0.634 6.634 13 N -0.451 5.451 14 C 0.121 3.879 15 C -0.347 4.347 16 H 0.074 0.926 17 C -0.001 4.001 18 N -0.892 5.892 19 Si 0.993 3.007 20 H -0.275 1.275 21 H -0.269 1.269 22 H -0.267 1.267 23 C -0.048 4.048 24 C -0.121 4.121 25 C 0.135 3.865 26 N -0.547 5.547 27 H 0.440 0.560 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.276 0.724 39 H 0.134 0.866 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -13.603 -1.252 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.272 6.272 4 C 0.388 3.612 5 O -0.406 6.406 6 C -0.086 4.086 7 C -0.117 4.117 8 C -0.147 4.147 9 C -0.051 4.051 10 C -0.155 4.155 11 C 0.267 3.733 12 O -0.523 6.523 13 N -0.167 5.167 14 C -0.022 4.022 15 C -0.475 4.475 16 H 0.092 0.908 17 C -0.204 4.204 18 N -0.530 5.530 19 Si 0.816 3.184 20 H -0.201 1.201 21 H -0.193 1.193 22 H -0.191 1.191 23 C -0.068 4.068 24 C -0.141 4.141 25 C 0.022 3.978 26 N -0.152 5.152 27 H 0.283 0.717 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.182 0.818 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.017 -13.674 -1.039 25.095 hybrid contribution 0.922 0.427 0.005 1.016 sum -20.095 -13.247 -1.033 24.091 Atomic orbital electron populations 1.21843 0.90121 1.04588 1.03825 1.23413 0.97125 0.78184 1.03146 1.86550 1.22063 1.34781 1.83855 1.19801 0.81288 0.87431 0.72704 1.90915 1.61161 1.41435 1.47114 1.18849 0.90938 0.83862 1.14944 1.21120 0.94963 0.93967 1.01699 1.18089 0.92854 0.93369 1.10426 1.21115 0.98700 0.91065 0.94181 1.19741 0.94122 0.93100 1.08534 1.18707 0.84719 0.87681 0.82172 1.90542 1.83886 1.28214 1.49676 1.43692 1.10742 1.23521 1.38789 1.21710 0.98881 0.87344 0.94265 1.19599 0.85008 0.93453 1.49448 0.90801 1.26181 1.00837 0.97764 0.95573 1.70014 1.25104 1.11442 1.46466 0.85004 0.76588 0.77853 0.78933 1.20087 1.19304 1.19150 1.20739 0.89983 1.00562 0.95558 1.19904 1.00490 0.87929 1.05761 1.18490 0.88903 0.89677 1.00691 1.41649 1.09266 1.02126 1.62177 0.71738 0.88023 0.91163 0.91132 0.90785 0.90834 0.81761 0.85300 0.91843 0.93454 0.92229 0.91460 0.84855 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 71.98 0.74 -0.22 16 2 C 0.05 0.68 6.20 71.98 0.45 1.12 16 3 O -0.36 -6.08 10.23 -57.56 -0.59 -6.66 16 4 C 0.54 12.10 7.94 70.09 0.56 12.66 16 5 O -0.52 -14.17 16.63 19.59 0.33 -13.84 16 6 C 0.02 0.50 6.99 39.86 0.28 0.78 16 7 C -0.09 -2.43 10.54 22.58 0.24 -2.19 16 8 C -0.14 -4.31 6.15 -21.37 -0.13 -4.44 16 9 C -0.03 -1.12 7.65 22.83 0.17 -0.95 16 10 C -0.15 -6.15 5.15 -20.11 -0.10 -6.26 16 11 C 0.48 25.04 7.29 86.70 0.63 25.67 16 12 O -0.63 -37.87 16.52 -4.06 -0.07 -37.94 16 13 N -0.45 -24.44 3.01 -662.51 -1.99 -26.43 16 14 C 0.12 5.60 7.09 127.77 0.91 6.50 16 15 C -0.35 -20.27 9.26 84.09 0.78 -19.49 16 16 H 0.07 4.57 7.40 -2.91 -0.02 4.55 16 17 C 0.00 -0.06 5.15 84.95 0.44 0.38 16 18 N -0.89 -47.70 10.70 21.68 0.23 -47.46 16 19 Si 0.99 42.94 29.57 68.60 2.03 44.97 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C -0.05 -1.57 9.52 22.32 0.21 -1.36 16 24 C -0.12 -2.91 10.00 22.10 0.22 -2.69 16 25 C 0.14 3.37 7.25 39.30 0.28 3.66 16 26 N -0.55 -10.47 6.17 -177.09 -1.09 -11.57 16 27 H 0.44 5.33 8.96 -92.71 -0.83 4.50 16 28 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.13 4.97 5.57 -2.91 -0.02 4.96 16 35 H 0.06 2.54 5.76 -2.39 -0.01 2.52 16 36 H 0.05 2.27 7.41 -2.39 -0.02 2.26 16 37 H 0.06 2.82 6.22 -2.39 -0.01 2.80 16 38 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.13 4.37 7.99 -2.91 -0.02 4.34 16 40 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -73.97 345.06 4.79 -69.18 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.27 Total: 16.58 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.67 Total: 13.17 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.85 Total: -85.46 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.33 Total: -58.44 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.97 4.79 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.195 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds