Wall clock time and date at job start Tue Mar 31 2020 11:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34508 * 124.44816 * 2 1 4 4 O 1.21425 * 125.72634 * 0.02562 * 3 2 1 5 5 C 1.48047 * 108.55263 * 180.02562 * 3 2 1 6 6 C 1.38586 * 134.10467 * 179.97438 * 5 3 2 7 7 C 1.38445 * 119.90085 * 180.02562 * 6 5 3 8 8 C 1.39470 * 120.30462 * 359.97438 * 7 6 5 9 9 C 1.48013 * 119.92125 * 180.02562 * 8 7 6 10 10 O 1.21538 * 119.99742 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00448 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00081 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46813 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46760 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46808 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99920 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99871 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47055 * 90.00504 * 19 17 15 21 21 H 1.48503 * 109.47278 * 210.00231 * 19 17 15 22 22 H 1.48494 * 109.47099 * 330.00305 * 19 17 15 23 23 C 1.39772 * 120.15384 * 0.02562 * 8 7 6 24 24 C 1.38428 * 119.62029 * 359.97438 * 23 8 7 25 25 C 1.34505 * 124.44271 * 180.02562 * 2 1 3 26 26 O 1.21442 * 125.69024 * 0.02562 * 25 2 1 27 27 H 1.09000 * 109.47064 * 269.97874 * 1 2 3 28 28 H 1.09001 * 109.46881 * 29.97428 * 1 2 3 29 29 H 1.08991 * 109.47279 * 149.97727 * 1 2 3 30 30 H 1.07998 * 120.05460 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.85297 * 179.72807 * 7 6 5 32 32 H 0.96996 * 119.99859 * 359.97438 * 11 9 8 33 33 H 1.08994 * 109.46944 * 299.99677 * 12 11 9 34 34 H 1.08999 * 109.46738 * 60.00406 * 12 11 9 35 35 H 1.09003 * 109.47254 * 300.00159 * 13 12 11 36 36 H 1.08994 * 109.47095 * 59.99882 * 13 12 11 37 37 H 1.08994 * 109.46764 * 299.99472 * 14 13 12 38 38 H 1.08991 * 109.47127 * 59.99959 * 14 13 12 39 39 H 0.97004 * 119.99926 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.19039 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1092 0.0000 4 8 1.8140 2.2515 0.0004 5 6 3.6497 0.7037 -0.0006 6 6 4.8499 1.3966 -0.0013 7 6 6.0477 0.7023 -0.0023 8 6 6.0527 -0.6923 -0.0021 9 6 7.3381 -1.4260 -0.0026 10 8 7.3441 -2.6414 -0.0029 11 7 8.5020 -0.7465 -0.0028 12 6 9.7743 -1.4728 -0.0038 13 6 10.9324 -0.4728 -0.0032 14 6 12.2611 -1.2313 -0.0049 15 6 13.4018 -0.2463 -0.0036 16 1 13.1992 0.8145 -0.0022 17 6 14.7039 -0.6995 -0.0043 18 7 14.9506 -1.9913 -0.0066 19 14 16.1177 0.5213 -0.0034 20 1 16.4927 0.8434 1.3969 21 1 17.2847 -0.0721 -0.7043 22 1 15.6998 1.7632 -0.7021 23 6 4.8466 -1.3988 -0.0014 24 6 3.6480 -0.7062 -0.0004 25 6 2.2257 -1.1093 -0.0005 26 8 1.8130 -2.2514 -0.0014 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5141 30 1 4.8509 2.4766 -0.0011 31 1 6.9825 1.2431 -0.0073 32 1 8.4973 0.2235 -0.0029 33 1 9.8356 -2.0996 0.8857 34 1 9.8347 -2.0985 -0.8943 35 1 10.8713 0.1545 -0.8925 36 1 10.8718 0.1527 0.8874 37 1 12.3224 -1.8587 0.8842 38 1 12.3214 -1.8565 -0.8957 39 1 15.8667 -2.3102 -0.0075 40 1 4.8498 -2.4787 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171508158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:14 Heat of formation + Delta-G solvation = -84.870814 kcal Electronic energy + Delta-G solvation = -24313.282759 eV Core-core repulsion = 20478.735237 eV Total energy + Delta-G solvation = -3834.547522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.49094 -41.20224 -39.91139 -39.14829 -37.08621 -37.00429 -35.26856 -33.78210 -32.73725 -32.38368 -29.37263 -28.23518 -26.58349 -25.42628 -24.05930 -23.84167 -22.32424 -21.68958 -21.08986 -19.23837 -18.63481 -18.54116 -17.99864 -17.92566 -17.23256 -16.75072 -16.65195 -16.47457 -16.26392 -15.62161 -15.48612 -15.28853 -15.18929 -15.05966 -14.45380 -14.26537 -14.23449 -13.74768 -13.73404 -13.58349 -13.40547 -12.99827 -12.73658 -12.51897 -12.35826 -11.81525 -11.69703 -11.63775 -11.58558 -11.24714 -11.06517 -11.03871 -10.52771 -10.51785 -10.42441 -10.11787 -8.17056 -6.28033 -1.33861 -0.33831 0.54829 1.15300 1.44295 1.45044 1.55846 1.64769 1.75440 1.92778 2.42250 2.45826 2.52561 3.03043 3.17226 3.38670 3.49106 3.79691 3.95171 3.98139 4.15723 4.24720 4.25730 4.30342 4.37722 4.58523 4.62646 4.67920 4.69673 4.79355 4.90933 4.98323 5.00740 5.21437 5.29103 5.37996 5.43151 5.55888 5.75055 5.87910 5.93436 6.24718 6.42155 6.44968 6.90321 7.08859 7.41689 8.94832 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.001983 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.284181 B =14118.199187 C =14919.433638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.578 5.578 3 C 0.581 3.419 4 O -0.476 6.476 5 C -0.121 4.121 6 C -0.032 4.032 7 C -0.038 4.038 8 C -0.111 4.111 9 C 0.551 3.449 10 O -0.576 6.576 11 N -0.701 5.701 12 C 0.128 3.872 13 C -0.102 4.102 14 C 0.021 3.979 15 C -0.538 4.538 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.259 1.259 23 C 0.004 3.996 24 C -0.159 4.159 25 C 0.579 3.421 26 O -0.488 6.488 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.418 0.582 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.072 0.928 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.837 10.876 -0.051 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.371 3.629 4 O -0.349 6.349 5 C -0.125 4.125 6 C -0.051 4.051 7 C -0.056 4.056 8 C -0.115 4.115 9 C 0.338 3.662 10 O -0.457 6.457 11 N -0.353 5.353 12 C 0.004 3.996 13 C -0.140 4.140 14 C -0.017 4.017 15 C -0.576 4.576 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.183 1.183 23 C -0.015 4.015 24 C -0.163 4.163 25 C 0.369 3.631 26 O -0.361 6.361 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.202 0.798 31 H 0.202 0.798 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.238 9.912 -0.056 29.928 hybrid contribution 0.881 -0.014 0.020 0.881 sum -27.357 9.898 -0.036 29.093 Atomic orbital electron populations 1.22195 0.73398 1.05908 1.05211 1.46485 1.10552 1.07656 1.67321 1.18424 0.86680 0.83795 0.74028 1.90818 1.79618 1.19755 1.44666 1.20818 0.94423 0.93763 1.03513 1.21098 0.87857 1.02700 0.93413 1.22035 1.00504 0.91411 0.91697 1.19998 0.91917 0.94944 1.04609 1.18510 0.84473 0.86860 0.76353 1.90807 1.88027 1.15394 1.51448 1.45827 1.04744 1.11390 1.73309 1.21328 0.81884 0.95195 1.01183 1.21612 0.92397 0.97446 1.02575 1.18964 0.92395 0.95221 0.95107 1.21702 0.91778 0.94012 1.50116 0.91271 1.26019 1.02299 0.96970 0.94971 1.70113 1.20674 1.14945 1.51853 0.85438 0.78100 0.79082 0.78360 1.19966 1.21364 1.18263 1.20689 0.88763 1.01282 0.90793 1.20261 0.93175 0.94949 1.07934 1.18420 0.86799 0.83934 0.73921 1.90819 1.79734 1.20425 1.45087 0.89297 0.87885 0.88525 0.79816 0.79839 0.74251 0.92788 0.92780 0.90903 0.90888 0.98983 0.98959 0.92937 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.77 127.77 1.38 2.05 16 2 N -0.58 -8.93 3.02 -786.19 -2.38 -11.30 16 3 C 0.58 9.29 8.03 86.89 0.70 9.99 16 4 O -0.48 -9.24 17.68 -3.48 -0.06 -9.30 16 5 C -0.12 -1.70 6.41 -19.92 -0.13 -1.82 16 6 C -0.03 -0.28 10.08 22.40 0.23 -0.05 16 7 C -0.04 -0.35 9.54 22.62 0.22 -0.13 16 8 C -0.11 -1.94 5.88 -20.02 -0.12 -2.06 16 9 C 0.55 13.78 7.78 86.84 0.68 14.46 16 10 O -0.58 -20.07 16.34 -3.84 -0.06 -20.13 16 11 N -0.70 -15.61 5.51 -465.80 -2.56 -18.18 16 12 C 0.13 3.98 5.67 86.38 0.49 4.47 16 13 C -0.10 -3.51 5.27 30.60 0.16 -3.35 16 14 C 0.02 1.03 4.97 29.85 0.15 1.17 16 15 C -0.54 -28.71 9.11 25.60 0.23 -28.47 16 16 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 17 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 18 N -0.94 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 C 0.00 0.09 9.63 22.69 0.22 0.31 16 24 C -0.16 -2.82 6.39 -20.02 -0.13 -2.95 16 25 C 0.58 11.28 8.02 86.82 0.70 11.97 16 26 O -0.49 -12.21 17.67 -3.53 -0.06 -12.28 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.73 7.96 -2.39 -0.02 0.71 16 29 H 0.10 0.82 7.96 -2.39 -0.02 0.80 16 30 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.18 0.41 6.36 -2.91 -0.02 0.39 16 32 H 0.42 5.76 6.48 -92.71 -0.60 5.16 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.14 3.14 7.65 -2.91 -0.02 3.12 16 Total: -1.00 -76.42 354.87 2.90 -73.52 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.49 Total: 3.02 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.23 Total: 5.77 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -4.66 Total: -85.16 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.19 Total: -41.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -76.42 2.90 -73.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -76.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds